Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:20:18 (1695928): wrapper (7.7.26015): starting
21:20:18 (1695928): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:20:18] Arguments: --nthreads 8
[2025-11-25 21:20:18] Threads: 8
[2025-11-25 21:20:18] Checking for CVMFS
[2025-11-25 21:20:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:20:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:20:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:20:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:20:20] 2.13.3.0 10299 29441 391076 153305 2 110 27438484 32935936 53670 16776704 0 290240566 99.814 133986640 28780 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 21:20:20] CVMFS is ok
[2025-11-25 21:20:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:20:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:20:20] Further information can be found at the LHC@home message board.
[2025-11-25 21:20:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:20:20] Checking for apptainer binary...
[2025-11-25 21:20:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:20:20] Running /usr/bin/apptainer --version
[2025-11-25 21:20:20] apptainer version 1.4.4-1.el9
[2025-11-25 21:20:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:20:21] c-3-40.aglt2.org
[2025-11-25 21:20:21] apptainer works
[2025-11-25 21:20:21] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:20:21] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:20:21] Starting ATLAS job with PandaID=6895882711
[2025-11-25 21:20:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 12:21:02]  *** The last 200 lines of the pilot log: ***
[2025-11-26 12:21:02] 2025-11-26 17:20:25,606 | INFO     | sum of deviations: 1397501902299.8662
[2025-11-26 12:21:02] 2025-11-26 17:20:25,606 | INFO     | mean x: 1764150682.7304642
[2025-11-26 12:21:02] 2025-11-26 17:20:25,606 | INFO     | mean y: 2863628.0792751983
[2025-11-26 12:21:02] 2025-11-26 17:20:25,607 | INFO     | intersect: -11546098610.121952
[2025-11-26 12:21:02] 2025-11-26 17:20:25,612 | INFO     | chi2: 10.153628093011672
[2025-11-26 12:21:02] 2025-11-26 17:20:25,613 | INFO     | sum of square deviations: 209868502314.29254
[2025-11-26 12:21:02] 2025-11-26 17:20:25,651 | INFO     | sum of deviations: 1707565792870.9304
[2025-11-26 12:21:02] 2025-11-26 17:20:25,652 | INFO     | mean x: 1764150530.240319
[2025-11-26 12:21:02] 2025-11-26 17:20:25,652 | INFO     | mean y: 2876740.9624145785
[2025-11-26 12:21:02] 2025-11-26 17:20:25,652 | INFO     | intersect: -14350887953.094444
[2025-11-26 12:21:02] 2025-11-26 17:20:25,653 | INFO     | chi2: 6.7574550742967805
[2025-11-26 12:21:02] 2025-11-26 17:20:25,653 | INFO     | current chi2=6.7574550742967805 (change=33.44787683382198 %)
[2025-11-26 12:21:02] 2025-11-26 17:20:25,658 | INFO     | sum of square deviations: 206303669166.55826
[2025-11-26 12:21:02] 2025-11-26 17:20:25,689 | INFO     | sum of deviations: 1841666117589.4263
[2025-11-26 12:21:02] 2025-11-26 17:20:25,690 | INFO     | mean x: 1764150377.7479954
[2025-11-26 12:21:02] 2025-11-26 17:20:25,690 | INFO     | mean y: 2882463.815578465
[2025-11-26 12:21:02] 2025-11-26 17:20:25,690 | INFO     | intersect: -15745630348.179178
[2025-11-26 12:21:02] 2025-11-26 17:20:25,691 | INFO     | chi2: 5.597565138416669
[2025-11-26 12:21:02] 2025-11-26 17:20:25,691 | INFO     | current chi2=5.597565138416669 (change=17.164597072823554 %)
[2025-11-26 12:21:02] 2025-11-26 17:20:25,691 | INFO     | right removable region: 872
[2025-11-26 12:21:02] 2025-11-26 17:20:25,692 | INFO     | sum of square deviations: 209867570234.2929
[2025-11-26 12:21:02] 2025-11-26 17:20:25,721 | INFO     | sum of deviations: 1063872091269.9729
[2025-11-26 12:21:02] 2025-11-26 17:20:25,721 | INFO     | mean x: 1764150835.240319
[2025-11-26 12:21:02] 2025-11-26 17:20:25,721 | INFO     | mean y: 2877731.2323462414
[2025-11-26 12:21:02] 2025-11-26 17:20:25,721 | INFO     | intersect: -8940051547.014517
[2025-11-26 12:21:02] 2025-11-26 17:20:25,722 | INFO     | chi2: 6.384026666603969
[2025-11-26 12:21:02] 2025-11-26 17:20:25,723 | INFO     | current chi2=6.384026666603969 (change=37.12565983189956 %)
[2025-11-26 12:21:02] 2025-11-26 17:20:25,724 | INFO     | sum of square deviations: 206301965068.06183
[2025-11-26 12:21:02] 2025-11-26 17:20:25,770 | INFO     | sum of deviations: 853359200744.6602
[2025-11-26 12:21:02] 2025-11-26 17:20:25,770 | INFO     | mean x: 1764150987.749141
[2025-11-26 12:21:02] 2025-11-26 17:20:25,770 | INFO     | mean y: 2886723.5463917525
[2025-11-26 12:21:02] 2025-11-26 17:20:25,770 | INFO     | intersect: -7294447920.851395
[2025-11-26 12:21:02] 2025-11-26 17:20:25,771 | INFO     | chi2: 4.7531067806584355
[2025-11-26 12:21:02] 2025-11-26 17:20:25,771 | INFO     | current chi2=4.7531067806584355 (change=25.546883982756192 %)
[2025-11-26 12:21:02] 2025-11-26 17:20:25,776 | INFO     | sum of square deviations: 202777338700.75
[2025-11-26 12:21:02] 2025-11-26 17:20:25,802 | INFO     | sum of deviations: 804012257192.9998
[2025-11-26 12:21:02] 2025-11-26 17:20:25,802 | INFO     | mean x: 1764151140.25
[2025-11-26 12:21:02] 2025-11-26 17:20:25,802 | INFO     | mean y: 2888857.732718894
[2025-11-26 12:21:02] 2025-11-26 17:20:25,802 | INFO     | intersect: -6991971363.779601
[2025-11-26 12:21:02] 2025-11-26 17:20:25,803 | INFO     | chi2: 4.716226729534347
[2025-11-26 12:21:02] 2025-11-26 17:20:25,805 | INFO     | current chi2=4.716226729534347 (change=0.7759146349112569 %)
[2025-11-26 12:21:02] 2025-11-26 17:20:25,808 | INFO     | left removable region: 30
[2025-11-26 12:21:02] 2025-11-26 17:20:25,810 | INFO     | sum of square deviations: 185095933527.33978
[2025-11-26 12:21:02] 2025-11-26 17:20:25,866 | INFO     | sum of deviations: 1170991216311.181
[2025-11-26 12:21:02] 2025-11-26 17:20:25,866 | INFO     | mean x: 1764151262.2684085
[2025-11-26 12:21:02] 2025-11-26 17:20:25,866 | INFO     | mean y: 2911345.6496437057
[2025-11-26 12:21:02] 2025-11-26 17:20:25,866 | INFO     | intersect: -11157818082.560389
[2025-11-26 12:21:02] 2025-11-26 17:20:25,867 | INFO     | chi2: 0.06780293053088901
[2025-11-26 12:21:02] 2025-11-26 17:20:25,868 | INFO     | current memory leak: 6.33 B/s (using 842 data points, chi2=0.07)
[2025-11-26 12:21:02] 2025-11-26 17:20:25,869 | INFO     | could have reported an average CPU frequency of 2944 MHz (33 samples)
[2025-11-26 12:21:02] 2025-11-26 17:20:25,869 | INFO     | ..............................
[2025-11-26 12:21:02] 2025-11-26 17:20:25,869 | INFO     | . Timing measurements:
[2025-11-26 12:21:02] 2025-11-26 17:20:25,869 | INFO     | . get job = 0 s
[2025-11-26 12:21:02] 2025-11-26 17:20:25,869 | INFO     | . initial setup = 5 s
[2025-11-26 12:21:02] 2025-11-26 17:20:25,869 | INFO     | . payload setup = 33 s
[2025-11-26 12:21:02] 2025-11-26 17:20:25,869 | INFO     | . stage-in = 0 s
[2025-11-26 12:21:02] 2025-11-26 17:20:25,869 | INFO     | . payload execution = 53842 s
[2025-11-26 12:21:02] 2025-11-26 17:20:25,869 | INFO     | . stage-out = 7 s
[2025-11-26 12:21:02] 2025-11-26 17:20:25,869 | INFO     | . log creation = 1 s
[2025-11-26 12:21:02] 2025-11-26 17:20:25,870 | INFO     | ..............................
[2025-11-26 12:21:02] 2025-11-26 17:20:26,841 | INFO     | 
[2025-11-26 12:21:02] 2025-11-26 17:20:26,841 | INFO     | job summary report
[2025-11-26 12:21:02] 2025-11-26 17:20:26,841 | INFO     | --------------------------------------------------
[2025-11-26 12:21:02] 2025-11-26 17:20:26,841 | INFO     | PanDA job id: 6895882711
[2025-11-26 12:21:02] 2025-11-26 17:20:26,841 | INFO     | task id: 47556149
[2025-11-26 12:21:02] 2025-11-26 17:20:26,841 | INFO     | errors: (none)
[2025-11-26 12:21:02] 2025-11-26 17:20:26,841 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 12:21:02] 2025-11-26 17:20:26,841 | INFO     | pilot state: finished 
[2025-11-26 12:21:02] 2025-11-26 17:20:26,841 | INFO     | transexitcode: 0
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | exeerrorcode: 0
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | exeerrordiag: 
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | exitcode: 0
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | exitmsg: OK
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | cpuconsumptiontime: 257193 s
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | nevents: 1000
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | neventsw: 0
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | pid: 1709266
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | pgrp: 1709266
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | corecount: 8
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | event service: False
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | sizes: {0: 2284144, 1: 2284343, 2: 2284343, 12: 2284371, 23: 2284399, 24: 2284689, 34: 2284845, 53880: 2334068, 53889: 2343090, 53892: 2343146, 53903: 2343456}
[2025-11-26 12:21:02] 2025-11-26 17:20:26,842 | INFO     | --------------------------------------------------
[2025-11-26 12:21:02] 2025-11-26 17:20:26,843 | INFO     | 
[2025-11-26 12:21:02] 2025-11-26 17:20:26,843 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 12:21:02] 2025-11-26 17:20:26,939 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,940 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,940 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,940 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,940 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,940 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,940 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,940 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,940 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,940 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,940 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,940 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,941 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,945 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,945 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,945 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,945 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,945 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 12:21:02] 2025-11-26 17:20:26,945 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,945 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 12:21:02] 2025-11-26 17:20:26,946 | INFO     | job 6895882711 has completed (purged errors)
[2025-11-26 12:21:02] 2025-11-26 17:20:26,946 | INFO     | overall cleanup function is called
[2025-11-26 12:21:02] 2025-11-26 17:20:27,910 | INFO     | PID=1701663 has CPU usage=20.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 12:21:02] 2025-11-26 17:20:27,910 | INFO     | .. there are 82 such processes running
[2025-11-26 12:21:02] 2025-11-26 17:20:28,010 | INFO     | --- collectZombieJob: --- 10, [1709266]
[2025-11-26 12:21:02] 2025-11-26 17:20:28,010 | INFO     | zombie collector waiting for pid 1709266
[2025-11-26 12:21:02] 2025-11-26 17:20:28,010 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 12:21:02] 2025-11-26 17:20:28,010 | INFO     | collected zombie processes
[2025-11-26 12:21:02] 2025-11-26 17:20:28,010 | INFO     | will attempt to kill all subprocesses of pid=1709266
[2025-11-26 12:21:02] 2025-11-26 17:20:30,008 | INFO     | process IDs to be killed: [1709266] (in reverse order)
[2025-11-26 12:21:02] 2025-11-26 17:20:30,312 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 12:21:02] 2025-11-26 17:20:30,330 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 12:21:02] 2025-11-26 17:20:30,405 | INFO     | did not find any defunct processes belonging to 1709266
[2025-11-26 12:21:02] 2025-11-26 17:20:30,482 | INFO     | did not find any defunct processes belonging to 1709266
[2025-11-26 12:21:02] 2025-11-26 17:20:30,496 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 12:21:02] 2025-11-26 17:20:30,496 | INFO     | ready for new job
[2025-11-26 12:21:02] 2025-11-26 17:20:30,496 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 12:21:02] 2025-11-26 17:20:30,507 | INFO     | ***************************************
[2025-11-26 12:21:02] 2025-11-26 17:20:30,507 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 12:21:02] 2025-11-26 17:20:30,507 | INFO     | ***************************************
[2025-11-26 12:21:02] 2025-11-26 17:20:30,507 | INFO     | 
[2025-11-26 12:21:02] 2025-11-26 17:20:30,519 | INFO     | architecture information:
[2025-11-26 12:21:02] 2025-11-26 17:20:30,520 | INFO     | executing command: cat /etc/os-release
[2025-11-26 12:21:02] 2025-11-26 17:20:30,572 | INFO     | cat /etc/os-release:
[2025-11-26 12:21:02] NAME="CentOS Linux"
[2025-11-26 12:21:02] VERSION="7 (Core)"
[2025-11-26 12:21:02] ID="centos"
[2025-11-26 12:21:02] ID_LIKE="rhel fedora"
[2025-11-26 12:21:02] VERSION_ID="7"
[2025-11-26 12:21:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 12:21:02] ANSI_COLOR="0;31"
[2025-11-26 12:21:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 12:21:02] HOME_URL="https://www.centos.org/"
[2025-11-26 12:21:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 12:21:02] 
[2025-11-26 12:21:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 12:21:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 12:21:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 12:21:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 12:21:02] 
[2025-11-26 12:21:02] 2025-11-26 17:20:30,573 | INFO     | ***************************************
[2025-11-26 12:21:02] 2025-11-26 17:20:31,076 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 12:21:02] 2025-11-26 17:20:31,132 | INFO     | sufficient remaining disk space (66253225984 B)
[2025-11-26 12:21:02] 2025-11-26 17:20:31,132 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 12:21:02] 2025-11-26 17:20:31,133 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 12:21:02] 2025-11-26 17:20:31,133 | INFO     | update_server=False
[2025-11-26 12:21:02] 2025-11-26 17:20:31,133 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 12:21:02] 2025-11-26 17:20:31,133 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 12:21:02] 2025-11-26 17:20:31,361 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 12:21:02] 2025-11-26 17:20:31,361 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 12:21:02] 2025-11-26 17:20:31,361 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:21:02] 2025-11-26 17:20:31,361 | INFO     | will abort loop
[2025-11-26 12:21:02] 2025-11-26 17:20:31,424 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:21:02] 2025-11-26 17:20:31,825 | INFO     | all data control threads have been joined
[2025-11-26 12:21:02] 2025-11-26 17:20:32,082 | INFO     | all payload control threads have been joined
[2025-11-26 12:21:02] 2025-11-26 17:20:32,140 | INFO     | [job] retrieve thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:32,367 | INFO     | [job] job monitor thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:32,431 | INFO     | [job] queue monitor thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:32,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 12:21:02] 2025-11-26 17:20:32,591 | INFO     | all job control threads have been joined
[2025-11-26 12:21:02] 2025-11-26 17:20:32,831 | INFO     | [data] control thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:32,870 | INFO     | [job] validate thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:33,012 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:33,012 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:33,096 | INFO     | [payload] control thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:33,395 | INFO     | [data] copytool_in thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:33,403 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:33,440 | INFO     | [payload] validate_post thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:33,597 | INFO     | [job] control thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:33,629 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:33,671 | INFO     | [payload] failed_post thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:34,506 | INFO     | [data] copytool_out thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:35,155 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 12:21:02] 2025-11-26 17:20:46,229 | INFO     | [monitor] cgroup control has ended
[2025-11-26 12:21:02] 2025-11-26 17:20:47,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140395177285440)>', '<ExcThread(monitor, started 140394662704896)>']
[2025-11-26 12:21:02] 2025-11-26 17:20:52,351 | INFO     | all workflow threads have been joined
[2025-11-26 12:21:02] 2025-11-26 17:20:52,351 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 12:21:02] 2025-11-26 17:20:52,351 | INFO     | traces error code: 0
[2025-11-26 12:21:02] 2025-11-26 17:20:52,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 12:21:02] 2025-11-26 17:21:00,901 | INFO     | PID=1701663 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 12:21:02] 2025-11-26 17:21:00,901 | INFO     | .. there are 82 such processes running
[2025-11-26 12:21:02] 2025-11-26 17:21:00,902 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 12:21:02] 2025-11-26 17:21:00,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 12:21:02] 2025-11-26 17:21:00,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 12:21:02] 2025-11-26 17:21:00,902 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 12:21:02] 2025-11-26 17:21:00,902 | INFO     | [monitor] control thread has ended
[2025-11-26 12:21:02] 2025-11-26 17:21:01,279 [wrapper] ==== pilot stdout END ====
[2025-11-26 12:21:02] 2025-11-26 17:21:01,286 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 12:21:02] 2025-11-26 17:21:01,310 [wrapper] pilotpid: 1701663
[2025-11-26 12:21:02] 2025-11-26 17:21:01,331 [wrapper] Pilot exit status: 0
[2025-11-26 12:21:02] 2025-11-26 17:21:01,494 [wrapper] pandaids: 6895882711
[2025-11-26 12:21:02] 2025-11-26 17:21:01,697 [wrapper] cleanup supervisor_pilot 2478538 1701664
[2025-11-26 12:21:02] 2025-11-26 17:21:01,721 [wrapper] Test setup, not cleaning
[2025-11-26 12:21:02] 2025-11-26 17:21:01,740 [wrapper] apfmon messages muted
[2025-11-26 12:21:02] 2025-11-26 17:21:01,772 [wrapper] ==== wrapper stdout END ====
[2025-11-26 12:21:02] 2025-11-26 17:21:01,787 [wrapper] ==== wrapper stderr END ====
[2025-11-26 12:21:02]  *** Error codes and diagnostics ***
[2025-11-26 12:21:02]     "exeErrorCode": 0,
[2025-11-26 12:21:02]     "exeErrorDiag": "",
[2025-11-26 12:21:02]     "pilotErrorCode": 0,
[2025-11-26 12:21:02]     "pilotErrorDiag": "",
[2025-11-26 12:21:02]  *** Listing of results directory ***
[2025-11-26 12:21:02] total 1316796
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 11:37 queuedata.json
[2025-11-26 12:21:02] -rwx------. 1 boincer umatlas     36292 Nov 24 11:40 runpilot2-wrapper.sh
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas       100 Nov 25 21:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 12:21:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 21:20 run_atlas
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas       105 Nov 25 21:20 job.xml
[2025-11-26 12:21:02] -rw-r--r--. 2 boincer umatlas 409917102 Nov 25 21:20 EVNT.47483658._001389.pool.root.1
[2025-11-26 12:21:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:20 start_atlas.sh
[2025-11-26 12:21:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 21:20 shared
[2025-11-26 12:21:02] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 21:20 input.tar.gz
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas         0 Nov 25 21:20 boinc_lockfile
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 21:20 pandaJob.out
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas        57 Nov 25 21:20 setup.sh.local
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas    991877 Nov 25 21:21 agis_schedconf.cvmfs.json
[2025-11-26 12:21:02] drwx------. 5 boincer umatlas      4096 Nov 25 21:21 pilot3
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas       532 Nov 26 12:09 boinc_task_state.xml
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas 917911067 Nov 26 12:19 HITS.47556149._003757.pool.root.1
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas      1059 Nov 26 12:19 memory_monitor_summary.json
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas   1516240 Nov 26 12:20 agis_ddmendpoints.agis.ALL.json
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas   2010145 Nov 26 12:20 log.47556149._003757.job.log.tgz.1
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas      8611 Nov 26 12:20 heartbeat.json
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas      6843 Nov 26 12:20 init_data.xml
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 12:21 boinc_mmap_file
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas       823 Nov 26 12:21 pilotlog.txt
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas        95 Nov 26 12:21 pilot_heartbeat.json
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas        29 Nov 26 12:21 wrapper_checkpoint.txt
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas   6313371 Nov 26 12:21 log.47556149._003757.job.log.1
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas       353 Nov 26 12:21 output.list
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas       620 Nov 26 12:21 runtime_log
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas   8345600 Nov 26 12:21 result.tar.gz
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas      9333 Nov 26 12:21 runtime_log.err
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas       658 Nov 26 12:21 bNUKDm6moh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLmLKDmCxFiMo.diag
[2025-11-26 12:21:02] -rw-r--r--. 1 boincer umatlas     21326 Nov 26 12:21 stderr.txt
[2025-11-26 12:21:02] HITS file was successfully produced:
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas 917911067 Nov 26 12:19 shared/HITS.pool.root.1
[2025-11-26 12:21:02]  *** Contents of shared directory: ***
[2025-11-26 12:21:02] total 1305468
[2025-11-26 12:21:02] -rw-r--r--. 2 boincer umatlas 409917102 Nov 25 21:20 ATLAS.root_0
[2025-11-26 12:21:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:20 start_atlas.sh
[2025-11-26 12:21:02] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 21:20 input.tar.gz
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas 917911067 Nov 26 12:19 HITS.pool.root.1
[2025-11-26 12:21:02] -rw-------. 1 boincer umatlas   8345600 Nov 26 12:21 result.tar.gz
12:21:04 (1695928): run_atlas exited; CPU time 259911.402377
12:21:04 (1695928): called boinc_finish(0)

</stderr_txt>
]]>

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