Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:18:50 (4001395): wrapper (7.7.26015): starting
17:18:50 (4001395): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 17:18:50] Arguments: --nthreads 12
[2025-11-25 17:18:50] Threads: 12
[2025-11-25 17:18:50] Checking for CVMFS
[2025-11-25 17:18:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:18:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:18:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:18:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:18:51] 2.11.5.0 3742376 27416 217448 153303 2 342 29875697 45568000 16299 130560 0 260043836 99.779 155312122 22085 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 17:18:51] CVMFS is ok
[2025-11-25 17:18:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:18:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:18:51] Further information can be found at the LHC@home message board.
[2025-11-25 17:18:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:18:51] Checking for apptainer binary...
[2025-11-25 17:18:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:18:51] Running /usr/bin/apptainer --version
[2025-11-25 17:18:51] apptainer version 1.4.1-1.el9
[2025-11-25 17:18:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:18:51] wns0066.triumf.lcg
[2025-11-25 17:18:51] apptainer works
[2025-11-25 17:18:51] Set ATHENA_PROC_NUMBER=12
[2025-11-25 17:18:51] Set ATHENA_CORE_NUMBER=12
[2025-11-25 17:18:51] Starting ATLAS job with PandaID=6897139777
[2025-11-25 17:18:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 17:24:14]  *** The last 200 lines of the pilot log: ***
[2025-11-25 17:24:14] 2025-11-26 01:23:13,887 | WARNING  | wrong length of table data, x=[1764119988.0, 1764120049.0], y=[26314.0, 419659.0] (must be same and length>=4)
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | could have reported an average CPU frequency of 2633 MHz (4 samples)
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | ..............................
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . Timing measurements:
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . get job = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . initial setup = 3 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . payload setup = 10 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . stage-in = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . payload execution = 88 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . stage-out = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . log creation = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | ..............................
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 17:24:14] 2025-11-26 01:23:13,889 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897139777/pilotlog.txt
[2025-11-25 17:24:14] 2025-11-26 01:23:13,932 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 17:24:14] - Log from pilotlog.txt -
[2025-11-25 17:24:14] 2025-11-26 01:23:13,885 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897139777/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 17:24:14] 2025-11-26 01:23:13,885 | INFO     | extracted standard info from prmon json
[2025-11-25 17:24:14] 2025-11-26 01:23:13,885 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 17:24:14] 2025-11-26 01:23:13,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 17:24:14] 2025-11-26 01:23:13,886 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 17:24:14] 2025-11-26 01:23:13,886 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 17:24:14] 2025-11-26 01:23:13,887 | WARNING  | wrong length of table data, x=[1764119988.0, 1764120049.0], y=[26314.0, 419659.0] (must be same and length>=4)
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | could have reported an average CPU frequency of 2633 MHz (4 samples)
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | ..............................
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . Timing measurements:
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . get job = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . initial setup = 3 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . payload setup = 10 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . stage-in = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . payload execution = 88 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . stage-out = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . log creation = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | ..............................
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 17:24:14] 2025-11-26 01:23:13,889 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897139777/pilotlog.txt
[2025-11-25 17:24:14] 2025-11-26 01:23:13,932 | WARNING  | 
[2025-11-25 17:24:14] [begin log extracts]
[2025-11-25 17:24:14] - Log from pilotlog.txt -
[2025-11-25 17:24:14] 2025-11-26 01:23:13,885 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897139777/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 17:24:14] 2025-11-26 01:23:13,885 | INFO     | extracted standard info from prmon json
[2025-11-25 17:24:14] 2025-11-26 01:23:13,885 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 17:24:14] 2025-11-26 01:23:13,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 17:24:14] 2025-11-26 01:23:13,886 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 17:24:14] 2025-11-26 01:23:13,886 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 17:24:14] 2025-11-26 01:23:13,887 | WARNING  | wrong length of table data, x=[1764119988.0, 1764120049.0], y=[26314.0, 419659.0] (must be same and length>=4)
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | could have reported an average CPU frequency of 2633 MHz (4 samples)
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | ..............................
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . Timing measurements:
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . get job = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . initial setup = 3 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . payload setup = 10 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . stage-in = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . payload execution = 88 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . stage-out = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | . log creation = 0 s
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | ..............................
[2025-11-25 17:24:14] 2025-11-26 01:23:13,888 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 17:24:14] 2025-11-26 01:23:13,889 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897139777/pilotlog.txt
[2025-11-25 17:24:14] [end log extracts]
[2025-11-25 17:24:14] 2025-11-26 01:23:13,932 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 17:24:14] 2025-11-26 01:23:13,933 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 17:24:14] 2025-11-26 01:23:14,013 | INFO     | 
[2025-11-25 17:24:14] 2025-11-26 01:23:14,013 | INFO     | job summary report
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | --------------------------------------------------
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | PanDA job id: 6897139777
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | task id: 47556173
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 17:21:01,533 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | pilot state: failed 
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | transexitcode: 65
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | exeerrorcode: 65
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | exitcode: 65
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | cpuconsumptiontime: 38 s
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | nevents: 0
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | neventsw: 0
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | pid: 4011652
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | pgrp: 4011652
[2025-11-25 17:24:14] 2025-11-26 01:23:14,014 | INFO     | corecount: 12
[2025-11-25 17:24:14] 2025-11-26 01:23:14,015 | INFO     | event service: False
[2025-11-25 17:24:14] 2025-11-26 01:23:14,015 | INFO     | sizes: {0: 2284254, 9: 2284516, 11: 2284544, 103: 2310045, 104: 2314363, 227: 2314501}
[2025-11-25 17:24:14] 2025-11-26 01:23:14,015 | INFO     | --------------------------------------------------
[2025-11-25 17:24:14] 2025-11-26 01:23:14,015 | INFO     | 
[2025-11-25 17:24:14] 2025-11-26 01:23:14,015 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 17:24:14] 2025-11-26 01:23:14,031 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,031 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,031 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,031 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,031 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,031 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,032 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,032 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,032 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,032 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,032 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,032 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,032 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,032 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,033 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,033 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,033 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,033 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 17:24:14] 2025-11-26 01:23:14,033 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,033 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 17:24:14] 2025-11-26 01:23:14,033 | INFO     | job 6897139777 has completed (purged errors)
[2025-11-25 17:24:14] 2025-11-26 01:23:14,033 | INFO     | overall cleanup function is called
[2025-11-25 17:24:14] 2025-11-26 01:23:15,047 | INFO     | --- collectZombieJob: --- 10, [4011652]
[2025-11-25 17:24:14] 2025-11-26 01:23:15,048 | INFO     | zombie collector waiting for pid 4011652
[2025-11-25 17:24:14] 2025-11-26 01:23:15,048 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 17:24:14] 2025-11-26 01:23:15,048 | INFO     | collected zombie processes
[2025-11-25 17:24:14] 2025-11-26 01:23:15,048 | INFO     | will attempt to kill all subprocesses of pid=4011652
[2025-11-25 17:24:14] 2025-11-26 01:23:15,263 | INFO     | process IDs to be killed: [4011652] (in reverse order)
[2025-11-25 17:24:14] 2025-11-26 01:23:15,329 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 17:24:14] 2025-11-26 01:23:15,329 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 17:24:14] 2025-11-26 01:23:15,344 | INFO     | did not find any defunct processes belonging to 4011652
[2025-11-25 17:24:14] 2025-11-26 01:23:15,350 | INFO     | did not find any defunct processes belonging to 4011652
[2025-11-25 17:24:14] 2025-11-26 01:23:15,351 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 17:24:14] 2025-11-26 01:23:15,351 | INFO     | ready for new job
[2025-11-25 17:24:14] 2025-11-26 01:23:15,351 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 17:24:14] 2025-11-26 01:23:15,353 | INFO     | ***************************************
[2025-11-25 17:24:14] 2025-11-26 01:23:15,353 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 17:24:14] 2025-11-26 01:23:15,353 | INFO     | ***************************************
[2025-11-25 17:24:14] 2025-11-26 01:23:15,353 | INFO     | 
[2025-11-25 17:24:14] 2025-11-26 01:23:15,355 | INFO     | architecture information:
[2025-11-25 17:24:14] 2025-11-26 01:23:15,355 | INFO     | executing command: cat /etc/os-release
[2025-11-25 17:24:14] 2025-11-26 01:23:15,406 | INFO     | cat /etc/os-release:
[2025-11-25 17:24:14] NAME="CentOS Linux"
[2025-11-25 17:24:14] VERSION="7 (Core)"
[2025-11-25 17:24:14] ID="centos"
[2025-11-25 17:24:14] ID_LIKE="rhel fedora"
[2025-11-25 17:24:14] VERSION_ID="7"
[2025-11-25 17:24:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 17:24:14] ANSI_COLOR="0;31"
[2025-11-25 17:24:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 17:24:14] HOME_URL="https://www.centos.org/"
[2025-11-25 17:24:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 17:24:14] 
[2025-11-25 17:24:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 17:24:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 17:24:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 17:24:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 17:24:14] 
[2025-11-25 17:24:14] 2025-11-26 01:23:15,406 | INFO     | ***************************************
[2025-11-25 17:24:14] 2025-11-26 01:23:15,909 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 17:24:14] 2025-11-26 01:23:16,000 | INFO     | sufficient remaining disk space (1775791767552 B)
[2025-11-25 17:24:14] 2025-11-26 01:23:16,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 17:24:14] 2025-11-26 01:23:16,001 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 17:24:14] 2025-11-26 01:23:16,001 | INFO     | update_server=False
[2025-11-25 17:24:14] 2025-11-26 01:23:16,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 17:24:14] 2025-11-26 01:23:16,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:24:14] 2025-11-26 01:23:16,284 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:24:14] 2025-11-26 01:23:16,284 | INFO     | aborting loop
[2025-11-25 17:24:14] 2025-11-26 01:23:16,395 | INFO     | all payload control threads have been joined
[2025-11-25 17:24:14] 2025-11-26 01:23:16,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 17:24:14] 2025-11-26 01:23:16,785 | INFO     | all job control threads have been joined
[2025-11-25 17:24:14] 2025-11-26 01:23:17,007 | INFO     | [job] retrieve thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:17,008 | INFO     | [job] queue monitor thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:17,053 | INFO     | all data control threads have been joined
[2025-11-25 17:24:14] 2025-11-26 01:23:17,291 | INFO     | [job] job monitor thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:17,401 | INFO     | [payload] control thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:17,419 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:17,639 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:17,653 | INFO     | [payload] validate_post thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:17,738 | INFO     | [job] validate thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:17,791 | INFO     | [job] control thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:17,816 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:18,056 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:18,059 | INFO     | [data] control thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:18,098 | INFO     | [data] copytool_in thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:18,247 | INFO     | [payload] failed_post thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:18,734 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 17:24:14] 2025-11-26 01:23:18,793 | INFO     | [data] copytool_out thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:22,743 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 17:24:14] 2025-11-26 01:23:44,746 | INFO     | 251s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 17:24:14] 2025-11-26 01:23:45,990 | INFO     | PID=4005059 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 17:24:14] 2025-11-26 01:23:45,990 | INFO     | .. there are 21 such processes running
[2025-11-25 17:24:14] 2025-11-26 01:23:45,990 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 17:24:14] 2025-11-26 01:23:45,991 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 17:24:14] 2025-11-26 01:23:45,991 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 17:24:14] 2025-11-26 01:24:06,407 | INFO     | [monitor] cgroup control has ended
[2025-11-25 17:24:14] 2025-11-26 01:24:08,387 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140383335524160)>', '<ExcThread(monitor, started 140382801221376)>']
[2025-11-25 17:24:14] 2025-11-26 01:24:09,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 17:24:14] 2025-11-26 01:24:09,149 | INFO     | [monitor] control thread has ended
[2025-11-25 17:24:14] 2025-11-26 01:24:13,413 | INFO     | all workflow threads have been joined
[2025-11-25 17:24:14] 2025-11-26 01:24:13,413 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 17:24:14] 2025-11-26 01:24:13,413 | INFO     | traces error code: 0
[2025-11-25 17:24:14] 2025-11-26 01:24:13,414 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 17:24:14] 2025-11-26 01:24:13,882 [wrapper] ==== pilot stdout END ====
[2025-11-25 17:24:14] 2025-11-26 01:24:13,909 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 17:24:14] 2025-11-26 01:24:13,927 [wrapper] pilotpid: 4005059
[2025-11-25 17:24:14] 2025-11-26 01:24:13,934 [wrapper] Pilot exit status: 0
[2025-11-25 17:24:14] 2025-11-26 01:24:14,049 [wrapper] pandaids: 6897139777
[2025-11-25 17:24:14] 2025-11-26 01:24:14,341 [wrapper] cleanup supervisor_pilot 4005065 4005060
[2025-11-25 17:24:14] 2025-11-26 01:24:14,354 [wrapper] Test setup, not cleaning
[2025-11-25 17:24:14] 2025-11-26 01:24:14,382 [wrapper] apfmon messages muted
[2025-11-25 17:24:14] 2025-11-26 01:24:14,387 [wrapper] ==== wrapper stdout END ====
[2025-11-25 17:24:14] 2025-11-26 01:24:14,393 [wrapper] ==== wrapper stderr END ====
[2025-11-25 17:24:14]  *** Error codes and diagnostics ***
[2025-11-25 17:24:14]     "exeErrorCode": 65,
[2025-11-25 17:24:14]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 17:24:14]     "pilotErrorCode": 1305,
[2025-11-25 17:24:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 17:24:14]  *** Listing of results directory ***
[2025-11-25 17:24:14] total 404552
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc      5112 Nov 25 08:48 queuedata.json
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc    576529 Nov 25 08:48 pilot3.tar.gz
[2025-11-25 17:24:14] -rwx------. 1 boinc boinc     36292 Nov 25 08:48 runpilot2-wrapper.sh
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc       100 Nov 25 17:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 17:24:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 17:18 run_atlas
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc       105 Nov 25 17:18 job.xml
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc      6595 Nov 25 17:18 init_data.xml
[2025-11-25 17:24:14] -rw-r--r--. 2 boinc boinc 410045817 Nov 25 17:18 EVNT.47483658._003089.pool.root.1
[2025-11-25 17:24:14] -rw-r--r--. 2 boinc boinc     15847 Nov 25 17:18 start_atlas.sh
[2025-11-25 17:24:14] drwxrwx--x. 2 boinc boinc      4096 Nov 25 17:18 shared
[2025-11-25 17:24:14] -rw-r--r--. 2 boinc boinc    590097 Nov 25 17:18 input.tar.gz
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc         0 Nov 25 17:18 boinc_lockfile
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc      2782 Nov 25 17:18 pandaJob.out
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc    991877 Nov 25 17:19 agis_schedconf.cvmfs.json
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc   1516240 Nov 25 17:19 agis_ddmendpoints.agis.ALL.json
[2025-11-25 17:24:14] drwx------. 5 boinc boinc      4096 Nov 25 17:19 pilot3
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc       524 Nov 25 17:20 boinc_task_state.xml
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc       992 Nov 25 17:21 memory_monitor_summary.json
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc     49327 Nov 25 17:21 log.47556173._000711.job.log.tgz.1
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc        95 Nov 25 17:23 pilot_heartbeat.json
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc     10333 Nov 25 17:23 heartbeat.json
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc      4937 Nov 25 17:24 pilotlog.txt
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc     97829 Nov 25 17:24 log.47556173._000711.job.log.1
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc      8192 Nov 25 17:24 boinc_mmap_file
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc       186 Nov 25 17:24 output.list
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc       620 Nov 25 17:24 runtime_log
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc    174080 Nov 25 17:24 result.tar.gz
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc      8636 Nov 25 17:24 runtime_log.err
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc       646 Nov 25 17:24 1YDLDmSOBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnPMKDm58UGMn.diag
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc        23 Nov 25 17:24 wrapper_checkpoint.txt
[2025-11-25 17:24:14] -rw-r--r--. 1 boinc boinc     22496 Nov 25 17:24 stderr.txt
[2025-11-25 17:24:14] No HITS result produced
[2025-11-25 17:24:14]  *** Contents of shared directory: ***
[2025-11-25 17:24:14] total 401208
[2025-11-25 17:24:14] -rw-r--r--. 2 boinc boinc 410045817 Nov 25 17:18 ATLAS.root_0
[2025-11-25 17:24:14] -rw-r--r--. 2 boinc boinc     15847 Nov 25 17:18 start_atlas.sh
[2025-11-25 17:24:14] -rw-r--r--. 2 boinc boinc    590097 Nov 25 17:18 input.tar.gz
[2025-11-25 17:24:14] -rw-------. 1 boinc boinc    174080 Nov 25 17:24 result.tar.gz
17:24:16 (4001395): run_atlas exited; CPU time 41.261409
17:24:16 (4001395): called boinc_finish(0)

</stderr_txt>
]]>

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