Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:23:58 (5472): wrapper (7.7.26015): starting
21:23:58 (5472): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 21:23:58] Arguments: --nthreads 8
[2025-11-27 21:23:58] Threads: 8
[2025-11-27 21:23:58] Checking for CVMFS
[2025-11-27 21:23:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 21:24:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 21:24:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 21:24:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 21:24:01] 2.11.2.0 20636 287305 136476 153384 3 84 18347697 25165825 1027 130560 11 125359861 99.885 73953738 2625 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 21:24:01] CVMFS is ok
[2025-11-27 21:24:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 21:24:01] Checking for apptainer binary...
[2025-11-27 21:24:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 21:24:01] Running /usr/bin/apptainer --version
[2025-11-27 21:24:02] apptainer version 1.3.2-1.el7
[2025-11-27 21:24:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 21:24:12] cg-vwn312.simple-grid.lan
[2025-11-27 21:24:12] apptainer works
[2025-11-27 21:24:12] Set ATHENA_PROC_NUMBER=8
[2025-11-27 21:24:12] Set ATHENA_CORE_NUMBER=8
[2025-11-27 21:24:12] Starting ATLAS job with PandaID=6896713756
[2025-11-27 21:24:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 19:25:55]  *** The last 200 lines of the pilot log: ***
[2025-11-28 19:25:55] 2025-11-28 18:24:32,228 | INFO     | time since job start (78967s) is within the limit (172800.0s)
[2025-11-28 19:25:55] 2025-11-28 18:24:32,995 | INFO     | monitor loop #5352: job 0:6896713756 is in state 'finished'
[2025-11-28 19:25:55] 2025-11-28 18:24:32,995 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 19:25:55] 2025-11-28 18:24:34,236 | INFO     | time since job start (78969s) is within the limit (172800.0s)
[2025-11-28 19:25:55] 2025-11-28 18:24:35,503 | INFO     | monitor loop #5353: job 0:6896713756 is in state 'finished'
[2025-11-28 19:25:55] 2025-11-28 18:24:35,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 19:25:55] 2025-11-28 18:24:36,243 | INFO     | time since job start (78971s) is within the limit (172800.0s)
[2025-11-28 19:25:55] 2025-11-28 18:24:38,013 | INFO     | monitor loop #5354: job 0:6896713756 is in state 'finished'
[2025-11-28 19:25:55] 2025-11-28 18:24:38,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 19:25:55] 2025-11-28 18:24:38,250 | INFO     | time since job start (78973s) is within the limit (172800.0s)
[2025-11-28 19:25:55] 2025-11-28 18:24:40,257 | INFO     | time since job start (78975s) is within the limit (172800.0s)
[2025-11-28 19:25:55] 2025-11-28 18:24:40,517 | INFO     | monitor loop #5355: job 0:6896713756 is in state 'finished'
[2025-11-28 19:25:55] 2025-11-28 18:24:40,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 19:25:55] 2025-11-28 18:24:41,368 | INFO     | PID=9199 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 19:25:55] 2025-11-28 18:24:41,368 | INFO     | .. there are 2 such processes running
[2025-11-28 19:25:55] 2025-11-28 18:24:42,369 | INFO     | time since job start (78977s) is within the limit (172800.0s)
[2025-11-28 19:25:55] 2025-11-28 18:24:42,376 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 19:25:55] 2025-11-28 18:24:42,377 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 19:25:55] 2025-11-28 18:24:42,379 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6896713756/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 19:25:55] 2025-11-28 18:24:42,380 | INFO     | extracted standard info from prmon json
[2025-11-28 19:25:55] 2025-11-28 18:24:42,380 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 19:25:55] 2025-11-28 18:24:42,380 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 19:25:55] 2025-11-28 18:24:42,416 | INFO     | fitting pss+swap vs Time
[2025-11-28 19:25:55] 2025-11-28 18:24:42,418 | INFO     | sum of square deviations: 656406643860.1006
[2025-11-28 19:25:55] 2025-11-28 18:24:42,501 | INFO     | sum of deviations: 2725333054729.1313
[2025-11-28 19:25:55] 2025-11-28 18:24:42,501 | INFO     | mean x: 1764314973.4735203
[2025-11-28 19:25:55] 2025-11-28 18:24:42,501 | INFO     | mean y: 2811096.9010903426
[2025-11-28 19:25:55] 2025-11-28 18:24:42,501 | INFO     | intersect: -7322443699.248922
[2025-11-28 19:25:55] 2025-11-28 18:24:42,503 | INFO     | chi2: 36.777146596111535
[2025-11-28 19:25:55] 2025-11-28 18:24:42,505 | INFO     | sum of square deviations: 648768537700.3433
[2025-11-28 19:25:55] 2025-11-28 18:24:42,553 | INFO     | sum of deviations: 3154262480568.609
[2025-11-28 19:25:55] 2025-11-28 18:24:42,554 | INFO     | mean x: 1764314820.9773262
[2025-11-28 19:25:55] 2025-11-28 18:24:42,554 | INFO     | mean y: 2819659.676309617
[2025-11-28 19:25:55] 2025-11-28 18:24:42,554 | INFO     | intersect: -8575142618.59056
[2025-11-28 19:25:55] 2025-11-28 18:24:42,556 | INFO     | chi2: 33.3837705619768
[2025-11-28 19:25:55] 2025-11-28 18:24:42,556 | INFO     | current chi2=33.3837705619768 (change=9.226860559360295 %)
[2025-11-28 19:25:55] 2025-11-28 18:24:42,556 | INFO     | right removable region: 1278
[2025-11-28 19:25:55] 2025-11-28 18:24:42,558 | INFO     | sum of square deviations: 648767775200.3428
[2025-11-28 19:25:55] 2025-11-28 18:24:42,614 | INFO     | sum of deviations: 2177117387060.7188
[2025-11-28 19:25:55] 2025-11-28 18:24:42,614 | INFO     | mean x: 1764315125.9773262
[2025-11-28 19:25:55] 2025-11-28 18:24:42,614 | INFO     | mean y: 2822041.5418295544
[2025-11-28 19:25:55] 2025-11-28 18:24:42,614 | INFO     | intersect: -5917819031.966024
[2025-11-28 19:25:55] 2025-11-28 18:24:42,616 | INFO     | chi2: 31.649103975424065
[2025-11-28 19:25:55] 2025-11-28 18:24:42,616 | INFO     | current chi2=31.649103975424065 (change=13.943557603867127 %)
[2025-11-28 19:25:55] 2025-11-28 18:24:42,616 | INFO     | left removable region: 10
[2025-11-28 19:25:55] 2025-11-28 18:24:42,618 | INFO     | sum of square deviations: 632172254696.7457
[2025-11-28 19:25:55] 2025-11-28 18:24:42,672 | INFO     | sum of deviations: 2196407959598.2803
[2025-11-28 19:25:55] 2025-11-28 18:24:42,672 | INFO     | mean x: 1764315095.4858043
[2025-11-28 19:25:55] 2025-11-28 18:24:42,673 | INFO     | mean y: 2842685.7933753943
[2025-11-28 19:25:55] 2025-11-28 18:24:42,673 | INFO     | intersect: -6127062083.316336
[2025-11-28 19:25:55] 2025-11-28 18:24:42,674 | INFO     | chi2: 23.278506571834672
[2025-11-28 19:25:55] 2025-11-28 18:24:42,675 | INFO     | current memory leak: 3.47 B/s (using 1268 data points, chi2=23.28)
[2025-11-28 19:25:55] 2025-11-28 18:24:42,676 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-28 19:25:55] 2025-11-28 18:24:42,676 | INFO     | ..............................
[2025-11-28 19:25:55] 2025-11-28 18:24:42,676 | INFO     | . Timing measurements:
[2025-11-28 19:25:55] 2025-11-28 18:24:42,676 | INFO     | . get job = 0 s
[2025-11-28 19:25:55] 2025-11-28 18:24:42,676 | INFO     | . initial setup = 5 s
[2025-11-28 19:25:55] 2025-11-28 18:24:42,676 | INFO     | . payload setup = 152 s
[2025-11-28 19:25:55] 2025-11-28 18:24:42,677 | INFO     | . stage-in = 0 s
[2025-11-28 19:25:55] 2025-11-28 18:24:42,677 | INFO     | . payload execution = 78485 s
[2025-11-28 19:25:55] 2025-11-28 18:24:42,677 | INFO     | . stage-out = 9 s
[2025-11-28 19:25:55] 2025-11-28 18:24:42,677 | INFO     | . log creation = 2 s
[2025-11-28 19:25:55] 2025-11-28 18:24:42,677 | INFO     | ..............................
[2025-11-28 19:25:55] 2025-11-28 18:24:42,798 | INFO     | 
[2025-11-28 19:25:55] 2025-11-28 18:24:42,798 | INFO     | job summary report
[2025-11-28 19:25:55] 2025-11-28 18:24:42,798 | INFO     | --------------------------------------------------
[2025-11-28 19:25:55] 2025-11-28 18:24:42,798 | INFO     | PanDA job id: 6896713756
[2025-11-28 19:25:55] 2025-11-28 18:24:42,798 | INFO     | task id: 47556161
[2025-11-28 19:25:55] 2025-11-28 18:24:42,799 | INFO     | errors: (none)
[2025-11-28 19:25:55] 2025-11-28 18:24:42,799 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 19:25:55] 2025-11-28 18:24:42,799 | INFO     | pilot state: finished 
[2025-11-28 19:25:55] 2025-11-28 18:24:42,799 | INFO     | transexitcode: 0
[2025-11-28 19:25:55] 2025-11-28 18:24:42,799 | INFO     | exeerrorcode: 0
[2025-11-28 19:25:55] 2025-11-28 18:24:42,799 | INFO     | exeerrordiag: 
[2025-11-28 19:25:55] 2025-11-28 18:24:42,799 | INFO     | exitcode: 0
[2025-11-28 19:25:55] 2025-11-28 18:24:42,799 | INFO     | exitmsg: OK
[2025-11-28 19:25:55] 2025-11-28 18:24:42,799 | INFO     | cpuconsumptiontime: 317622 s
[2025-11-28 19:25:55] 2025-11-28 18:24:42,799 | INFO     | nevents: 1000
[2025-11-28 19:25:55] 2025-11-28 18:24:42,800 | INFO     | neventsw: 0
[2025-11-28 19:25:55] 2025-11-28 18:24:42,800 | INFO     | pid: 15668
[2025-11-28 19:25:55] 2025-11-28 18:24:42,800 | INFO     | pgrp: 15668
[2025-11-28 19:25:55] 2025-11-28 18:24:42,800 | INFO     | corecount: 8
[2025-11-28 19:25:55] 2025-11-28 18:24:42,800 | INFO     | event service: False
[2025-11-28 19:25:55] 2025-11-28 18:24:42,800 | INFO     | sizes: {0: 2283434, 1: 2284119, 2: 2284318, 3: 2284318, 13: 2284346, 24: 2284402, 35: 2284558, 45: 2284586, 56: 2284614, 67: 2284642, 78: 2284670, 88: 2285006, 99:
[2025-11-28 19:25:55] 2025-11-28 18:24:42,800 | INFO     | --------------------------------------------------
[2025-11-28 19:25:55] 2025-11-28 18:24:42,800 | INFO     | 
[2025-11-28 19:25:55] 2025-11-28 18:24:42,800 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-28 19:25:55] 2025-11-28 18:24:43,378 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,379 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,379 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,379 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,379 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,379 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,379 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,379 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,380 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,380 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,380 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,380 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,380 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,380 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,380 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,380 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,380 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,380 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 19:25:55] 2025-11-28 18:24:43,381 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,381 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 19:25:55] 2025-11-28 18:24:43,381 | INFO     | job 6896713756 has completed (purged errors)
[2025-11-28 19:25:55] 2025-11-28 18:24:43,381 | INFO     | overall cleanup function is called
[2025-11-28 19:25:55] 2025-11-28 18:24:44,397 | INFO     | --- collectZombieJob: --- 10, [15668]
[2025-11-28 19:25:55] 2025-11-28 18:24:44,397 | INFO     | zombie collector waiting for pid 15668
[2025-11-28 19:25:55] 2025-11-28 18:24:44,397 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 19:25:55] 2025-11-28 18:24:44,398 | INFO     | collected zombie processes
[2025-11-28 19:25:55] 2025-11-28 18:24:44,398 | INFO     | will attempt to kill all subprocesses of pid=15668
[2025-11-28 19:25:55] 2025-11-28 18:24:44,488 | INFO     | process IDs to be killed: [15668] (in reverse order)
[2025-11-28 19:25:55] 2025-11-28 18:24:45,520 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 19:25:55] 2025-11-28 18:24:45,520 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 19:25:55] 2025-11-28 18:24:45,529 | INFO     | did not find any defunct processes belonging to 15668
[2025-11-28 19:25:55] 2025-11-28 18:24:45,531 | INFO     | did not find any defunct processes belonging to 15668
[2025-11-28 19:25:55] 2025-11-28 18:24:45,598 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 19:25:55] 2025-11-28 18:24:45,599 | INFO     | ready for new job
[2025-11-28 19:25:55] 2025-11-28 18:24:45,599 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 19:25:55] 2025-11-28 18:24:45,603 | INFO     | ***************************************
[2025-11-28 19:25:55] 2025-11-28 18:24:45,604 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 19:25:55] 2025-11-28 18:24:45,604 | INFO     | ***************************************
[2025-11-28 19:25:55] 2025-11-28 18:24:45,604 | INFO     | 
[2025-11-28 19:25:55] 2025-11-28 18:24:45,604 | INFO     | pilot is running in a VM
[2025-11-28 19:25:55] 2025-11-28 18:24:45,605 | INFO     | architecture information:
[2025-11-28 19:25:55] 2025-11-28 18:24:45,618 | INFO     | executing command: cat /etc/os-release
[2025-11-28 19:25:55] 2025-11-28 18:24:45,963 | INFO     | cat /etc/os-release:
[2025-11-28 19:25:55] NAME="CentOS Linux"
[2025-11-28 19:25:55] VERSION="7 (Core)"
[2025-11-28 19:25:55] ID="centos"
[2025-11-28 19:25:55] ID_LIKE="rhel fedora"
[2025-11-28 19:25:55] VERSION_ID="7"
[2025-11-28 19:25:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 19:25:55] ANSI_COLOR="0;31"
[2025-11-28 19:25:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 19:25:55] HOME_URL="https://www.centos.org/"
[2025-11-28 19:25:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 19:25:55] 
[2025-11-28 19:25:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 19:25:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 19:25:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 19:25:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 19:25:55] 
[2025-11-28 19:25:55] 2025-11-28 18:24:45,964 | INFO     | ***************************************
[2025-11-28 19:25:55] 2025-11-28 18:24:46,467 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-28 19:25:55] 2025-11-28 18:24:46,703 | INFO     | sufficient remaining disk space (495782461440 B)
[2025-11-28 19:25:55] 2025-11-28 18:24:46,704 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 19:25:55] 2025-11-28 18:24:46,704 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 19:25:55] 2025-11-28 18:24:46,704 | INFO     | update_server=False
[2025-11-28 19:25:55] 2025-11-28 18:24:46,704 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 19:25:55] 2025-11-28 18:24:46,705 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 19:25:55] 2025-11-28 18:24:46,705 | INFO     | aborting loop
[2025-11-28 19:25:55] 2025-11-28 18:24:46,998 | INFO     | all data control threads have been joined
[2025-11-28 19:25:55] 2025-11-28 18:24:47,639 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 19:25:55] 2025-11-28 18:24:47,700 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 19:25:55] 2025-11-28 18:24:47,710 | INFO     | [job] retrieve thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:47,711 | INFO     | [job] job monitor thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:47,755 | INFO     | [data] copytool_in thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:47,819 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 19:25:55] 2025-11-28 18:24:47,944 | INFO     | all job control threads have been joined
[2025-11-28 19:25:55] 2025-11-28 18:24:48,004 | INFO     | [data] control thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:48,016 | INFO     | all payload control threads have been joined
[2025-11-28 19:25:55] 2025-11-28 18:24:48,252 | INFO     | [payload] failed_post thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:48,479 | INFO     | [job] validate thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:48,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:48,596 | INFO     | [payload] validate_post thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:48,606 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:48,825 | INFO     | [job] queue monitor thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:48,950 | INFO     | [job] control thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:49,018 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:49,021 | INFO     | [payload] control thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:49,122 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:49,707 | INFO     | [data] copytool_out thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:24:51,648 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 19:25:55] 2025-11-28 18:25:15,498 | INFO     | PID=9199 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 19:25:55] 2025-11-28 18:25:15,498 | INFO     | .. there are 2 such processes running
[2025-11-28 19:25:55] 2025-11-28 18:25:15,498 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 19:25:55] 2025-11-28 18:25:15,498 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 19:25:55] 2025-11-28 18:25:15,498 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 19:25:55] 2025-11-28 18:25:42,573 | INFO     | [monitor] cgroup control has ended
[2025-11-28 19:25:55] 2025-11-28 18:25:43,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140064430958400)>', '<ExcThread(monitor, started 140063782467328)>']
[2025-11-28 19:25:55] 2025-11-28 18:25:44,672 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 19:25:55] 2025-11-28 18:25:44,672 | INFO     | [monitor] control thread has ended
[2025-11-28 19:25:55] 2025-11-28 18:25:48,900 | INFO     | all workflow threads have been joined
[2025-11-28 19:25:55] 2025-11-28 18:25:48,900 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 19:25:55] 2025-11-28 18:25:48,900 | INFO     | traces error code: 0
[2025-11-28 19:25:55] 2025-11-28 18:25:48,901 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 19:25:55] 2025-11-28 18:25:49,286 [wrapper] ==== pilot stdout END ====
[2025-11-28 19:25:55] 2025-11-28 18:25:49,408 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 19:25:55] 2025-11-28 18:25:49,532 [wrapper] pilotpid: 9199
[2025-11-28 19:25:55] 2025-11-28 18:25:49,681 [wrapper] Pilot exit status: 0
[2025-11-28 19:25:55] 2025-11-28 18:25:50,075 [wrapper] pandaids: 6896713756
[2025-11-28 19:25:55] 2025-11-28 18:25:51,335 [wrapper] cleanup supervisor_pilot   791 9200
[2025-11-28 19:25:55] 2025-11-28 18:25:51,465 [wrapper] Test setup, not cleaning
[2025-11-28 19:25:55] 2025-11-28 18:25:51,569 [wrapper] apfmon messages muted
[2025-11-28 19:25:55] 2025-11-28 18:25:51,663 [wrapper] ==== wrapper stdout END ====
[2025-11-28 19:25:55] 2025-11-28 18:25:51,772 [wrapper] ==== wrapper stderr END ====
[2025-11-28 19:25:55]  *** Error codes and diagnostics ***
[2025-11-28 19:25:55]     "exeErrorCode": 0,
[2025-11-28 19:25:55]     "exeErrorDiag": "",
[2025-11-28 19:25:55]     "pilotErrorCode": 0,
[2025-11-28 19:25:55]     "pilotErrorDiag": "",
[2025-11-28 19:25:55]  *** Listing of results directory ***
[2025-11-28 19:25:55] total 1339536
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc    576529 Nov 25 06:12 pilot3.tar.gz
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc      5112 Nov 25 06:41 queuedata.json
[2025-11-28 19:25:55] -rwx------. 1 boinc boinc     36292 Nov 25 06:45 runpilot2-wrapper.sh
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc       100 Nov 27 21:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 19:25:55] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 21:23 run_atlas
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc       105 Nov 27 21:23 job.xml
[2025-11-28 19:25:55] -rw-r--r--. 2 boinc boinc 411729445 Nov 27 21:23 EVNT.47483658._002111.pool.root.1
[2025-11-28 19:25:55] -rw-r--r--. 2 boinc boinc     15847 Nov 27 21:23 start_atlas.sh
[2025-11-28 19:25:55] drwxrwx--x. 2 boinc boinc        68 Nov 27 21:23 shared
[2025-11-28 19:25:55] -rw-r--r--. 2 boinc boinc    590108 Nov 27 21:23 input.tar.gz
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc      6390 Nov 27 21:23 init_data.xml
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc         0 Nov 27 21:23 boinc_lockfile
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc      2784 Nov 27 21:24 pandaJob.out
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc    991500 Nov 27 21:28 agis_schedconf.cvmfs.json
[2025-11-28 19:25:55] drwx------. 5 boinc boinc      4096 Nov 27 21:28 pilot3
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc       533 Nov 28 18:53 boinc_task_state.xml
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc 930098535 Nov 28 19:21 HITS.47556161._000946.pool.root.1
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc      1033 Nov 28 19:22 memory_monitor_summary.json
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc   1516240 Nov 28 19:22 agis_ddmendpoints.agis.ALL.json
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc   2394629 Nov 28 19:22 log.47556161._000946.job.log.tgz.1
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc        95 Nov 28 19:24 pilot_heartbeat.json
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc      8630 Nov 28 19:24 heartbeat.json
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc        29 Nov 28 19:25 wrapper_checkpoint.txt
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc      8192 Nov 28 19:25 boinc_mmap_file
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc      4883 Nov 28 19:25 pilotlog.txt
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc  10580378 Nov 28 19:25 log.47556161._000946.job.log.1
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc       353 Nov 28 19:25 output.list
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc       620 Nov 28 19:25 runtime_log
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc  12994560 Nov 28 19:25 result.tar.gz
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc      8817 Nov 28 19:25 runtime_log.err
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc       662 Nov 28 19:25 hFLMDmm20h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYBMKDmzb19Zn.diag
[2025-11-28 19:25:55] -rw-r--r--. 1 boinc boinc     21500 Nov 28 19:25 stderr.txt
[2025-11-28 19:25:55] HITS file was successfully produced:
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc 930098535 Nov 28 19:21 shared/HITS.pool.root.1
[2025-11-28 19:25:55]  *** Contents of shared directory: ***
[2025-11-28 19:25:55] total 1323668
[2025-11-28 19:25:55] -rw-r--r--. 2 boinc boinc 411729445 Nov 27 21:23 ATLAS.root_0
[2025-11-28 19:25:55] -rw-r--r--. 2 boinc boinc     15847 Nov 27 21:23 start_atlas.sh
[2025-11-28 19:25:55] -rw-r--r--. 2 boinc boinc    590108 Nov 27 21:23 input.tar.gz
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc 930098535 Nov 28 19:21 HITS.pool.root.1
[2025-11-28 19:25:55] -rw-------. 1 boinc boinc  12994560 Nov 28 19:25 result.tar.gz
19:25:56 (5472): run_atlas exited; CPU time 317879.250340
19:25:56 (5472): called boinc_finish(0)

</stderr_txt>
]]>

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