Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:45:58 (2842512): wrapper (7.7.26015): starting
20:45:58 (2842512): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 20:45:58] Arguments: --nthreads 8
[2025-11-25 20:45:58] Threads: 8
[2025-11-25 20:45:58] Checking for CVMFS
[2025-11-25 20:45:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:45:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:45:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:45:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:45:59] 2.13.3.0 11460 29408 258504 153304 0 569 21990613 32935936 53218 16776704 0 377233153 99.723 256467261 35503 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 20:45:59] CVMFS is ok
[2025-11-25 20:45:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:45:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:45:59] Further information can be found at the LHC@home message board.
[2025-11-25 20:45:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:45:59] Checking for apptainer binary...
[2025-11-25 20:45:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:45:59] Running /usr/bin/apptainer --version
[2025-11-25 20:45:59] apptainer version 1.4.4-1.el9
[2025-11-25 20:45:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:45:59] c7-3-34.aglt2.org
[2025-11-25 20:45:59] apptainer works
[2025-11-25 20:45:59] Set ATHENA_PROC_NUMBER=8
[2025-11-25 20:45:59] Set ATHENA_CORE_NUMBER=8
[2025-11-25 20:45:59] Starting ATLAS job with PandaID=6896713644
[2025-11-25 20:45:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:20:12 (2842512): BOINC client no longer exists - exiting
08:20:12 (2842512): timer handler: client dead, exiting
08:30:12 (3841819): wrapper (7.7.26015): starting
08:30:12 (3841819): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 08:30:12] Arguments: --nthreads 8
[2025-11-26 08:30:12] Threads: 8
[2025-11-26 08:30:12] This job has been restarted, cleaning up previous attempt
[2025-11-26 08:30:13] Checking for CVMFS
[2025-11-26 08:30:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:30:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:30:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:30:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:30:13] 2.13.3.0 11460 30113 256096 153323 1 739 18791332 32935936 44775 16776704 0 385232253 99.725 260340754 35396 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 08:30:13] CVMFS is ok
[2025-11-26 08:30:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:30:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:30:13] Further information can be found at the LHC@home message board.
[2025-11-26 08:30:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:30:13] Checking for apptainer binary...
[2025-11-26 08:30:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:30:13] Running /usr/bin/apptainer --version
[2025-11-26 08:30:13] apptainer version 1.4.4-1.el9
[2025-11-26 08:30:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:30:13] c7-3-34.aglt2.org
[2025-11-26 08:30:13] apptainer works
[2025-11-26 08:30:13] Set ATHENA_PROC_NUMBER=8
[2025-11-26 08:30:13] Set ATHENA_CORE_NUMBER=8
[2025-11-26 08:30:13] Starting ATLAS job with PandaID=6896713644
[2025-11-26 08:30:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:14:39]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:14:39] 2025-11-27 00:13:50,202 | INFO     | time since job start (38606s) is within the limit (172800.0s)
[2025-11-26 19:14:39] 2025-11-27 00:13:52,541 | INFO     | monitor loop #2296: job 0:6896713644 is in state 'finished'
[2025-11-26 19:14:39] 2025-11-27 00:13:52,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:14:39] 2025-11-27 00:13:52,750 | INFO     | PID=3872491 has CPU usage=19.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 19:14:39] 2025-11-27 00:13:52,750 | INFO     | .. there are 80 such processes running
[2025-11-26 19:14:39] 2025-11-27 00:13:53,750 | INFO     | time since job start (38609s) is within the limit (172800.0s)
[2025-11-26 19:14:39] 2025-11-27 00:13:55,046 | INFO     | monitor loop #2297: job 0:6896713644 is in state 'finished'
[2025-11-26 19:14:39] 2025-11-27 00:13:55,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:14:39] 2025-11-27 00:13:55,757 | INFO     | time since job start (38611s) is within the limit (172800.0s)
[2025-11-26 19:14:39] 2025-11-27 00:13:57,555 | INFO     | monitor loop #2298: job 0:6896713644 is in state 'finished'
[2025-11-26 19:14:39] 2025-11-27 00:13:57,556 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:14:39] 2025-11-27 00:13:57,772 | INFO     | time since job start (38613s) is within the limit (172800.0s)
[2025-11-26 19:14:39] 2025-11-27 00:13:59,779 | INFO     | time since job start (38615s) is within the limit (172800.0s)
[2025-11-26 19:14:39] 2025-11-27 00:14:00,060 | INFO     | monitor loop #2299: job 0:6896713644 is in state 'finished'
[2025-11-26 19:14:39] 2025-11-27 00:14:00,061 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:14:39] 2025-11-27 00:14:00,552 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 19:14:39] 2025-11-27 00:14:00,557 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3187.874229166666
[2025-11-26 19:14:39] 2025-11-27 00:14:00,573 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6896713644/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:14:39] 2025-11-27 00:14:00,574 | INFO     | extracted standard info from prmon json
[2025-11-26 19:14:39] 2025-11-27 00:14:00,575 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:14:39] 2025-11-27 00:14:00,575 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:14:39] 2025-11-27 00:14:00,585 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:14:39] 2025-11-27 00:14:00,587 | INFO     | sum of square deviations: 78648396627.25111
[2025-11-26 19:14:39] 2025-11-27 00:14:00,599 | INFO     | sum of deviations: 2916301246812.9463
[2025-11-26 19:14:39] 2025-11-27 00:14:00,600 | INFO     | mean x: 1764183127.8104265
[2025-11-26 19:14:39] 2025-11-27 00:14:00,600 | INFO     | mean y: 5159237.582938389
[2025-11-26 19:14:39] 2025-11-27 00:14:00,600 | INFO     | intersect: -65411170603.49156
[2025-11-26 19:14:39] 2025-11-27 00:14:00,600 | INFO     | chi2: 21.983308166153016
[2025-11-26 19:14:39] 2025-11-27 00:14:00,601 | INFO     | sum of square deviations: 76799494005.57318
[2025-11-26 19:14:39] 2025-11-27 00:14:00,608 | INFO     | sum of deviations: 3361346086208.2573
[2025-11-26 19:14:39] 2025-11-27 00:14:00,609 | INFO     | mean x: 1764182975.3152866
[2025-11-26 19:14:39] 2025-11-27 00:14:00,609 | INFO     | mean y: 5195938.640127389
[2025-11-26 19:14:39] 2025-11-27 00:14:00,609 | INFO     | intersect: -77209239080.9571
[2025-11-26 19:14:39] 2025-11-27 00:14:00,609 | INFO     | chi2: 17.596960162439448
[2025-11-26 19:14:39] 2025-11-27 00:14:00,609 | INFO     | current chi2=17.596960162439448 (change=19.95308426994207 %)
[2025-11-26 19:14:39] 2025-11-27 00:14:00,610 | INFO     | right removable region: 627
[2025-11-26 19:14:39] 2025-11-27 00:14:00,610 | INFO     | sum of square deviations: 76799258057.57327
[2025-11-26 19:14:39] 2025-11-27 00:14:00,617 | INFO     | sum of deviations: 2567611776496.9907
[2025-11-26 19:14:39] 2025-11-27 00:14:00,618 | INFO     | mean x: 1764183280.3152866
[2025-11-26 19:14:39] 2025-11-27 00:14:00,618 | INFO     | mean y: 5187965.79299363
[2025-11-26 19:14:39] 2025-11-27 00:14:00,618 | INFO     | intersect: -58976342338.065704
[2025-11-26 19:14:39] 2025-11-27 00:14:00,618 | INFO     | chi2: 19.46020470122196
[2025-11-26 19:14:39] 2025-11-27 00:14:00,618 | INFO     | current chi2=19.46020470122196 (change=11.477360212853654 %)
[2025-11-26 19:14:39] 2025-11-27 00:14:00,619 | INFO     | left removable region: 10
[2025-11-26 19:14:39] 2025-11-27 00:14:00,619 | INFO     | sum of square deviations: 72834048640.38885
[2025-11-26 19:14:39] 2025-11-27 00:14:00,626 | INFO     | sum of deviations: 2824881054590.2295
[2025-11-26 19:14:39] 2025-11-27 00:14:00,627 | INFO     | mean x: 1764183249.821718
[2025-11-26 19:14:39] 2025-11-27 00:14:00,627 | INFO     | mean y: 5255410.93841167
[2025-11-26 19:14:39] 2025-11-27 00:14:00,627 | INFO     | intersect: -68418894176.74797
[2025-11-26 19:14:39] 2025-11-27 00:14:00,627 | INFO     | chi2: 13.060000843214933
[2025-11-26 19:14:39] 2025-11-27 00:14:00,627 | INFO     | current memory leak: 38.79 B/s (using 617 data points, chi2=13.06)
[2025-11-26 19:14:39] 2025-11-27 00:14:00,629 | INFO     | could have reported an average CPU frequency of 3189 MHz (25 samples)
[2025-11-26 19:14:39] 2025-11-27 00:14:00,629 | INFO     | ..............................
[2025-11-26 19:14:39] 2025-11-27 00:14:00,629 | INFO     | . Timing measurements:
[2025-11-26 19:14:39] 2025-11-27 00:14:00,629 | INFO     | . get job = 0 s
[2025-11-26 19:14:39] 2025-11-27 00:14:00,629 | INFO     | . initial setup = 2 s
[2025-11-26 19:14:39] 2025-11-27 00:14:00,629 | INFO     | . payload setup = 5 s
[2025-11-26 19:14:39] 2025-11-27 00:14:00,629 | INFO     | . stage-in = 0 s
[2025-11-26 19:14:39] 2025-11-27 00:14:00,630 | INFO     | . payload execution = 38572 s
[2025-11-26 19:14:39] 2025-11-27 00:14:00,630 | INFO     | . stage-out = 5 s
[2025-11-26 19:14:39] 2025-11-27 00:14:00,630 | INFO     | . log creation = 1 s
[2025-11-26 19:14:39] 2025-11-27 00:14:00,630 | INFO     | ..............................
[2025-11-26 19:14:39] 2025-11-27 00:14:01,181 | INFO     | 
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | job summary report
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | --------------------------------------------------
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | PanDA job id: 6896713644
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | task id: 47556161
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | errors: (none)
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | pilot state: finished 
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | transexitcode: 0
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | exeerrorcode: 0
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | exeerrordiag: 
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | exitcode: 0
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | exitmsg: OK
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | cpuconsumptiontime: 201614 s
[2025-11-26 19:14:39] 2025-11-27 00:14:01,182 | INFO     | nevents: 1000
[2025-11-26 19:14:39] 2025-11-27 00:14:01,183 | INFO     | neventsw: 0
[2025-11-26 19:14:39] 2025-11-27 00:14:01,183 | INFO     | pid: 3920932
[2025-11-26 19:14:39] 2025-11-27 00:14:01,183 | INFO     | pgrp: 3920932
[2025-11-26 19:14:39] 2025-11-27 00:14:01,183 | INFO     | corecount: 8
[2025-11-26 19:14:39] 2025-11-27 00:14:01,183 | INFO     | event service: False
[2025-11-26 19:14:39] 2025-11-27 00:14:01,183 | INFO     | sizes: {0: 2284262, 4: 2284524, 11: 2284552, 38578: 2327702, 38585: 2336696, 38586: 2336752, 38601: 2337190}
[2025-11-26 19:14:39] 2025-11-27 00:14:01,183 | INFO     | --------------------------------------------------
[2025-11-26 19:14:39] 2025-11-27 00:14:01,183 | INFO     | 
[2025-11-26 19:14:39] 2025-11-27 00:14:01,183 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-26 19:14:39] 2025-11-27 00:14:01,318 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,318 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,318 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,319 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,320 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:14:39] 2025-11-27 00:14:01,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,320 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:14:39] 2025-11-27 00:14:01,320 | INFO     | job 6896713644 has completed (purged errors)
[2025-11-26 19:14:39] 2025-11-27 00:14:01,320 | INFO     | overall cleanup function is called
[2025-11-26 19:14:39] 2025-11-27 00:14:02,366 | INFO     | --- collectZombieJob: --- 10, [3920932]
[2025-11-26 19:14:39] 2025-11-27 00:14:02,366 | INFO     | zombie collector waiting for pid 3920932
[2025-11-26 19:14:39] 2025-11-27 00:14:02,367 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:14:39] 2025-11-27 00:14:02,367 | INFO     | collected zombie processes
[2025-11-26 19:14:39] 2025-11-27 00:14:02,394 | INFO     | will attempt to kill all subprocesses of pid=3920932
[2025-11-26 19:14:39] 2025-11-27 00:14:03,594 | INFO     | process IDs to be killed: [3920932] (in reverse order)
[2025-11-26 19:14:39] 2025-11-27 00:14:03,836 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:14:39] 2025-11-27 00:14:03,836 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:14:39] 2025-11-27 00:14:03,869 | INFO     | did not find any defunct processes belonging to 3920932
[2025-11-26 19:14:39] 2025-11-27 00:14:03,901 | INFO     | did not find any defunct processes belonging to 3920932
[2025-11-26 19:14:39] 2025-11-27 00:14:03,902 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:14:39] 2025-11-27 00:14:03,903 | INFO     | ready for new job
[2025-11-26 19:14:39] 2025-11-27 00:14:03,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:14:39] 2025-11-27 00:14:03,906 | INFO     | ***************************************
[2025-11-26 19:14:39] 2025-11-27 00:14:03,906 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:14:39] 2025-11-27 00:14:03,907 | INFO     | ***************************************
[2025-11-26 19:14:39] 2025-11-27 00:14:03,907 | INFO     | 
[2025-11-26 19:14:39] 2025-11-27 00:14:03,947 | INFO     | architecture information:
[2025-11-26 19:14:39] 2025-11-27 00:14:03,955 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:14:39] 2025-11-27 00:14:04,094 | INFO     | cat /etc/os-release:
[2025-11-26 19:14:39] NAME="CentOS Linux"
[2025-11-26 19:14:39] VERSION="7 (Core)"
[2025-11-26 19:14:39] ID="centos"
[2025-11-26 19:14:39] ID_LIKE="rhel fedora"
[2025-11-26 19:14:39] VERSION_ID="7"
[2025-11-26 19:14:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:14:39] ANSI_COLOR="0;31"
[2025-11-26 19:14:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:14:39] HOME_URL="https://www.centos.org/"
[2025-11-26 19:14:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:14:39] 
[2025-11-26 19:14:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:14:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:14:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:14:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:14:39] 
[2025-11-26 19:14:39] 2025-11-27 00:14:04,095 | INFO     | ***************************************
[2025-11-26 19:14:39] 2025-11-27 00:14:04,599 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-26 19:14:39] 2025-11-27 00:14:04,622 | INFO     | sufficient remaining disk space (65791852544 B)
[2025-11-26 19:14:39] 2025-11-27 00:14:04,623 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:14:39] 2025-11-27 00:14:04,623 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:14:39] 2025-11-27 00:14:04,623 | INFO     | update_server=False
[2025-11-26 19:14:39] 2025-11-27 00:14:04,623 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:14:39] 2025-11-27 00:14:04,699 | INFO     | all data control threads have been joined
[2025-11-26 19:14:39] 2025-11-27 00:14:05,108 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 19:14:39] 2025-11-27 00:14:05,109 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 19:14:39] 2025-11-27 00:14:05,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:14:39] 2025-11-27 00:14:05,109 | INFO     | will abort loop
[2025-11-26 19:14:39] 2025-11-27 00:14:05,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:14:39] 2025-11-27 00:14:05,514 | INFO     | all payload control threads have been joined
[2025-11-26 19:14:39] 2025-11-27 00:14:05,628 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:05,705 | INFO     | [data] control thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:05,798 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:05,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:14:39] 2025-11-27 00:14:05,947 | INFO     | all job control threads have been joined
[2025-11-26 19:14:39] 2025-11-27 00:14:05,948 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:05,953 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:14:39] 2025-11-27 00:14:06,114 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:06,160 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:06,519 | INFO     | [payload] control thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:06,577 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:06,653 | INFO     | [job] validate thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:06,654 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:06,919 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:06,948 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:06,962 | INFO     | [job] control thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:07,059 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:07,959 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:09,383 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:14:39] 2025-11-27 00:14:31,960 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:14:39] 2025-11-27 00:14:33,715 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140450430277440)>', '<ExcThread(monitor, started 140449708758784)>']
[2025-11-26 19:14:39] 2025-11-27 00:14:34,974 | INFO     | PID=3872491 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:14:39] 2025-11-27 00:14:34,975 | INFO     | .. there are 80 such processes running
[2025-11-26 19:14:39] 2025-11-27 00:14:34,975 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:14:39] 2025-11-27 00:14:34,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:14:39] 2025-11-27 00:14:34,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:14:39] 2025-11-27 00:14:34,975 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:14:39] 2025-11-27 00:14:34,976 | INFO     | [monitor] control thread has ended
[2025-11-26 19:14:39] 2025-11-27 00:14:38,741 | INFO     | all workflow threads have been joined
[2025-11-26 19:14:39] 2025-11-27 00:14:38,742 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:14:39] 2025-11-27 00:14:38,742 | INFO     | traces error code: 0
[2025-11-26 19:14:39] 2025-11-27 00:14:38,742 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:14:39] 2025-11-27 00:14:39,331 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:14:39] 2025-11-27 00:14:39,338 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:14:39] 2025-11-27 00:14:39,344 [wrapper] pilotpid: 3872491
[2025-11-26 19:14:39] 2025-11-27 00:14:39,362 [wrapper] Pilot exit status: 0
[2025-11-26 19:14:39] 2025-11-27 00:14:39,452 [wrapper] pandaids: 6896713644 6896713644
[2025-11-26 19:14:39] 2025-11-27 00:14:39,623 [wrapper] cleanup supervisor_pilot 1090889 3872492
[2025-11-26 19:14:39] 2025-11-27 00:14:39,631 [wrapper] Test setup, not cleaning
[2025-11-26 19:14:39] 2025-11-27 00:14:39,634 [wrapper] apfmon messages muted
[2025-11-26 19:14:39] 2025-11-27 00:14:39,637 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:14:39] 2025-11-27 00:14:39,639 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:14:39]  *** Error codes and diagnostics ***
[2025-11-26 19:14:40]     "exeErrorCode": 0,
[2025-11-26 19:14:40]     "exeErrorDiag": "",
[2025-11-26 19:14:40]     "pilotErrorCode": 0,
[2025-11-26 19:14:40]     "pilotErrorDiag": "",
[2025-11-26 19:14:40]  *** Listing of results directory ***
[2025-11-26 19:14:40] total 1740692
[2025-11-26 19:14:40] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:25 queuedata.json
[2025-11-26 19:14:40] -rwx------. 1 boincer umatlas     36292 Nov 25 00:27 runpilot2-wrapper.sh
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas       100 Nov 25 20:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:14:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 20:45 run_atlas
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas       105 Nov 25 20:45 job.xml
[2025-11-26 19:14:40] -rw-r--r--. 3 boincer umatlas 410490042 Nov 25 20:45 EVNT.47483658._002103.pool.root.1
[2025-11-26 19:14:40] -rw-r--r--. 3 boincer umatlas 410490042 Nov 25 20:45 ATLAS.root_0
[2025-11-26 19:14:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 20:45 start_atlas.sh
[2025-11-26 19:14:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 20:45 shared
[2025-11-26 19:14:40] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 20:45 input.tar.gz
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas         0 Nov 25 20:45 boinc_lockfile
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 08:30 pandaJob.out
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas        57 Nov 26 08:30 setup.sh.local
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas    991830 Nov 26 08:30 agis_schedconf.cvmfs.json
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas       533 Nov 26 18:58 boinc_task_state.xml
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas      6948 Nov 26 19:10 init_data.xml
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas 944122290 Nov 26 19:12 HITS.47556161._000870.pool.root.1
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas      1076 Nov 26 19:13 memory_monitor_summary.json
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:13 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas   1866109 Nov 26 19:13 log.47556161._000870.job.log.tgz.1
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas        96 Nov 26 19:13 pilot_heartbeat.json
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas      8635 Nov 26 19:14 heartbeat.json
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:14 boinc_mmap_file
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas        29 Nov 26 19:14 wrapper_checkpoint.txt
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas      5010 Nov 26 19:14 pilotlog.txt
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas   4852086 Nov 26 19:14 log.47556161._000870.job.log.1
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas       353 Nov 26 19:14 output.list
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:14 runtime_log
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas   6737920 Nov 26 19:14 result.tar.gz
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas      9423 Nov 26 19:14 runtime_log.err
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas       789 Nov 26 19:14 KwBNDmfl0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpAMKDmZOdKWn.diag
[2025-11-26 19:14:40] -rw-r--r--. 1 boincer umatlas     24090 Nov 26 19:14 stderr.txt
[2025-11-26 19:14:40] HITS file was successfully produced:
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas 944122290 Nov 26 19:12 shared/HITS.pool.root.1
[2025-11-26 19:14:40]  *** Contents of shared directory: ***
[2025-11-26 19:14:40] total 1330052
[2025-11-26 19:14:40] -rw-r--r--. 3 boincer umatlas 410490042 Nov 25 20:45 ATLAS.root_0
[2025-11-26 19:14:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 20:45 start_atlas.sh
[2025-11-26 19:14:40] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 20:45 input.tar.gz
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas 944122290 Nov 26 19:12 HITS.pool.root.1
[2025-11-26 19:14:40] -rw-------. 1 boincer umatlas   6737920 Nov 26 19:14 result.tar.gz
19:14:41 (3841819): run_atlas exited; CPU time 202979.927901
19:14:41 (3841819): called boinc_finish(0)

</stderr_txt>
]]>

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