Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:06:33 (1155233): wrapper (7.7.26015): starting
20:06:33 (1155233): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 20:06:33] Arguments: --nthreads 8
[2025-11-25 20:06:33] Threads: 8
[2025-11-25 20:06:33] Checking for CVMFS
[2025-11-25 20:06:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:06:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:06:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:06:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:06:34] 2.13.3.0 13172 29369 408544 153303 3 697 31372926 32935936 39544 16776704 0 152122482 99.539 167371015 34991 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 20:06:34] CVMFS is ok
[2025-11-25 20:06:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:06:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:06:34] Further information can be found at the LHC@home message board.
[2025-11-25 20:06:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:06:34] Checking for apptainer binary...
[2025-11-25 20:06:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:06:34] Running /usr/bin/apptainer --version
[2025-11-25 20:06:34] apptainer version 1.4.4-1.el9
[2025-11-25 20:06:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:06:35] c6-6-8-3.aglt2.org
[2025-11-25 20:06:35] apptainer works
[2025-11-25 20:06:35] Set ATHENA_PROC_NUMBER=8
[2025-11-25 20:06:35] Set ATHENA_CORE_NUMBER=8
[2025-11-25 20:06:35] Starting ATLAS job with PandaID=6895881932
[2025-11-25 20:06:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 12:47:52]  *** The last 200 lines of the pilot log: ***
[2025-11-26 12:47:52] 2025-11-26 17:47:05,073 | INFO     | fitting pss+swap vs Time
[2025-11-26 12:47:52] 2025-11-26 17:47:05,075 | INFO     | sum of square deviations: 293642543036.61206
[2025-11-26 12:47:52] 2025-11-26 17:47:05,094 | INFO     | sum of deviations: 1613304618027.5513
[2025-11-26 12:47:52] 2025-11-26 17:47:05,095 | INFO     | mean x: 1764149206.8971486
[2025-11-26 12:47:52] 2025-11-26 17:47:05,095 | INFO     | mean y: 2891492.411405295
[2025-11-26 12:47:52] 2025-11-26 17:47:05,095 | INFO     | intersect: -9689539423.574606
[2025-11-26 12:47:52] 2025-11-26 17:47:05,096 | INFO     | chi2: 9.20892798220559
[2025-11-26 12:47:52] 2025-11-26 17:47:05,097 | INFO     | sum of square deviations: 289180449909.3021
[2025-11-26 12:47:52] 2025-11-26 17:47:05,116 | INFO     | sum of deviations: 1936224017932.6687
[2025-11-26 12:47:52] 2025-11-26 17:47:05,116 | INFO     | mean x: 1764149054.4042988
[2025-11-26 12:47:52] 2025-11-26 17:47:05,117 | INFO     | mean y: 2902531.2691914025
[2025-11-26 12:47:52] 2025-11-26 17:47:05,117 | INFO     | intersect: -11809056995.808554
[2025-11-26 12:47:52] 2025-11-26 17:47:05,118 | INFO     | chi2: 6.2047746258550305
[2025-11-26 12:47:52] 2025-11-26 17:47:05,118 | INFO     | current chi2=6.2047746258550305 (change=32.622183191740504 %)
[2025-11-26 12:47:52] 2025-11-26 17:47:05,119 | INFO     | sum of square deviations: 284763799494.39136
[2025-11-26 12:47:52] 2025-11-26 17:47:05,139 | INFO     | sum of deviations: 2171683826567.526
[2025-11-26 12:47:52] 2025-11-26 17:47:05,139 | INFO     | mean x: 1764148901.9115226
[2025-11-26 12:47:52] 2025-11-26 17:47:05,139 | INFO     | mean y: 2910649.8549382715
[2025-11-26 12:47:52] 2025-11-26 17:47:05,140 | INFO     | intersect: -13450954078.528742
[2025-11-26 12:47:52] 2025-11-26 17:47:05,141 | INFO     | chi2: 4.228987226832203
[2025-11-26 12:47:52] 2025-11-26 17:47:05,141 | INFO     | current chi2=4.228987226832203 (change=31.843016356948826 %)
[2025-11-26 12:47:52] 2025-11-26 17:47:05,142 | INFO     | sum of square deviations: 280392122312.7117
[2025-11-26 12:47:52] 2025-11-26 17:47:05,162 | INFO     | sum of deviations: 2212216641527.5513
[2025-11-26 12:47:52] 2025-11-26 17:47:05,162 | INFO     | mean x: 1764148749.4146845
[2025-11-26 12:47:52] 2025-11-26 17:47:05,162 | INFO     | mean y: 2912061.6794208894
[2025-11-26 12:47:52] 2025-11-26 17:47:05,162 | INFO     | intersect: -13915735828.266146
[2025-11-26 12:47:52] 2025-11-26 17:47:05,163 | INFO     | chi2: 4.0970229068538595
[2025-11-26 12:47:52] 2025-11-26 17:47:05,163 | INFO     | current chi2=4.0970229068538595 (change=3.1204709993223023 %)
[2025-11-26 12:47:52] 2025-11-26 17:47:05,163 | INFO     | right removable region: 966
[2025-11-26 12:47:52] 2025-11-26 17:47:05,165 | INFO     | sum of square deviations: 289179612989.30237
[2025-11-26 12:47:52] 2025-11-26 17:47:05,184 | INFO     | sum of deviations: 1252646759847.096
[2025-11-26 12:47:52] 2025-11-26 17:47:05,185 | INFO     | mean x: 1764149359.4042988
[2025-11-26 12:47:52] 2025-11-26 17:47:05,185 | INFO     | mean y: 2903812.214943705
[2025-11-26 12:47:52] 2025-11-26 17:47:05,185 | INFO     | intersect: -7638907296.460529
[2025-11-26 12:47:52] 2025-11-26 17:47:05,186 | INFO     | chi2: 5.7540709799471035
[2025-11-26 12:47:52] 2025-11-26 17:47:05,186 | INFO     | current chi2=5.7540709799471035 (change=37.516386369122515 %)
[2025-11-26 12:47:52] 2025-11-26 17:47:05,188 | INFO     | sum of square deviations: 284762720642.5192
[2025-11-26 12:47:52] 2025-11-26 17:47:05,206 | INFO     | sum of deviations: 1135666065971.0127
[2025-11-26 12:47:52] 2025-11-26 17:47:05,207 | INFO     | mean x: 1764149511.9012346
[2025-11-26 12:47:52] 2025-11-26 17:47:05,207 | INFO     | mean y: 2907846.3230452673
[2025-11-26 12:47:52] 2025-11-26 17:47:05,207 | INFO     | intersect: -7032720734.008785
[2025-11-26 12:47:52] 2025-11-26 17:47:05,208 | INFO     | chi2: 5.381449872362029
[2025-11-26 12:47:52] 2025-11-26 17:47:05,208 | INFO     | current chi2=5.381449872362029 (change=6.475782257182031 %)
[2025-11-26 12:47:52] 2025-11-26 17:47:05,208 | INFO     | left removable region: 20
[2025-11-26 12:47:52] 2025-11-26 17:47:05,209 | INFO     | sum of square deviations: 262518701164.4039
[2025-11-26 12:47:52] 2025-11-26 17:47:05,227 | INFO     | sum of deviations: 1602552942258.4937
[2025-11-26 12:47:52] 2025-11-26 17:47:05,227 | INFO     | mean x: 1764149328.9164906
[2025-11-26 12:47:52] 2025-11-26 17:47:05,227 | INFO     | mean y: 2933662.9682875266
[2025-11-26 12:47:52] 2025-11-26 17:47:05,228 | INFO     | intersect: -10766366524.403713
[2025-11-26 12:47:52] 2025-11-26 17:47:05,229 | INFO     | chi2: 0.10735666416853608
[2025-11-26 12:47:52] 2025-11-26 17:47:05,229 | INFO     | current memory leak: 6.10 B/s (using 946 data points, chi2=0.11)
[2025-11-26 12:47:52] 2025-11-26 17:47:05,230 | INFO     | could have reported an average CPU frequency of 2734 MHz (36 samples)
[2025-11-26 12:47:52] 2025-11-26 17:47:05,230 | INFO     | ..............................
[2025-11-26 12:47:52] 2025-11-26 17:47:05,230 | INFO     | . Timing measurements:
[2025-11-26 12:47:52] 2025-11-26 17:47:05,231 | INFO     | . get job = 0 s
[2025-11-26 12:47:52] 2025-11-26 17:47:05,231 | INFO     | . initial setup = 2 s
[2025-11-26 12:47:52] 2025-11-26 17:47:05,231 | INFO     | . payload setup = 14 s
[2025-11-26 12:47:52] 2025-11-26 17:47:05,231 | INFO     | . stage-in = 0 s
[2025-11-26 12:47:52] 2025-11-26 17:47:05,231 | INFO     | . payload execution = 59920 s
[2025-11-26 12:47:52] 2025-11-26 17:47:05,231 | INFO     | . stage-out = 6 s
[2025-11-26 12:47:52] 2025-11-26 17:47:05,231 | INFO     | . log creation = 1 s
[2025-11-26 12:47:52] 2025-11-26 17:47:05,231 | INFO     | ..............................
[2025-11-26 12:47:52] 2025-11-26 17:47:05,430 | INFO     | 
[2025-11-26 12:47:52] 2025-11-26 17:47:05,430 | INFO     | job summary report
[2025-11-26 12:47:52] 2025-11-26 17:47:05,430 | INFO     | --------------------------------------------------
[2025-11-26 12:47:52] 2025-11-26 17:47:05,430 | INFO     | PanDA job id: 6895881932
[2025-11-26 12:47:52] 2025-11-26 17:47:05,430 | INFO     | task id: 47556149
[2025-11-26 12:47:52] 2025-11-26 17:47:05,430 | INFO     | errors: (none)
[2025-11-26 12:47:52] 2025-11-26 17:47:05,430 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 12:47:52] 2025-11-26 17:47:05,430 | INFO     | pilot state: finished 
[2025-11-26 12:47:52] 2025-11-26 17:47:05,430 | INFO     | transexitcode: 0
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | exeerrorcode: 0
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | exeerrordiag: 
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | exitcode: 0
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | exitmsg: OK
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | cpuconsumptiontime: 248668 s
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | nevents: 1000
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | neventsw: 0
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | pid: 1167518
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | pgrp: 1167518
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | corecount: 8
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | event service: False
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | sizes: {0: 2284314, 11: 2284604, 22: 2284604, 59939: 2336462, 59946: 2345456, 59949: 2345512, 59974: 2345886}
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | --------------------------------------------------
[2025-11-26 12:47:52] 2025-11-26 17:47:05,431 | INFO     | 
[2025-11-26 12:47:52] 2025-11-26 17:47:05,432 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 12:47:52] 2025-11-26 17:47:05,494 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,495 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,495 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,495 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,495 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,495 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,495 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,495 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,495 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,496 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,496 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,496 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,496 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,496 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,496 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,496 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,496 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,496 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 12:47:52] 2025-11-26 17:47:05,496 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,496 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 12:47:52] 2025-11-26 17:47:05,497 | INFO     | job 6895881932 has completed (purged errors)
[2025-11-26 12:47:52] 2025-11-26 17:47:05,497 | INFO     | overall cleanup function is called
[2025-11-26 12:47:52] 2025-11-26 17:47:06,526 | INFO     | --- collectZombieJob: --- 10, [1167518]
[2025-11-26 12:47:52] 2025-11-26 17:47:06,526 | INFO     | zombie collector waiting for pid 1167518
[2025-11-26 12:47:52] 2025-11-26 17:47:06,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 12:47:52] 2025-11-26 17:47:06,527 | INFO     | collected zombie processes
[2025-11-26 12:47:52] 2025-11-26 17:47:06,527 | INFO     | will attempt to kill all subprocesses of pid=1167518
[2025-11-26 12:47:52] 2025-11-26 17:47:07,267 | INFO     | process IDs to be killed: [1167518] (in reverse order)
[2025-11-26 12:47:52] 2025-11-26 17:47:07,481 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 12:47:52] 2025-11-26 17:47:07,481 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 12:47:52] 2025-11-26 17:47:07,506 | INFO     | did not find any defunct processes belonging to 1167518
[2025-11-26 12:47:52] 2025-11-26 17:47:07,595 | INFO     | did not find any defunct processes belonging to 1167518
[2025-11-26 12:47:52] 2025-11-26 17:47:07,596 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 12:47:52] 2025-11-26 17:47:07,596 | INFO     | ready for new job
[2025-11-26 12:47:52] 2025-11-26 17:47:07,596 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 12:47:52] 2025-11-26 17:47:07,611 | INFO     | ***************************************
[2025-11-26 12:47:52] 2025-11-26 17:47:07,611 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 12:47:52] 2025-11-26 17:47:07,611 | INFO     | ***************************************
[2025-11-26 12:47:52] 2025-11-26 17:47:07,611 | INFO     | 
[2025-11-26 12:47:52] 2025-11-26 17:47:07,616 | INFO     | architecture information:
[2025-11-26 12:47:52] 2025-11-26 17:47:07,617 | INFO     | executing command: cat /etc/os-release
[2025-11-26 12:47:52] 2025-11-26 17:47:07,690 | INFO     | cat /etc/os-release:
[2025-11-26 12:47:52] NAME="CentOS Linux"
[2025-11-26 12:47:52] VERSION="7 (Core)"
[2025-11-26 12:47:52] ID="centos"
[2025-11-26 12:47:52] ID_LIKE="rhel fedora"
[2025-11-26 12:47:52] VERSION_ID="7"
[2025-11-26 12:47:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 12:47:52] ANSI_COLOR="0;31"
[2025-11-26 12:47:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 12:47:52] HOME_URL="https://www.centos.org/"
[2025-11-26 12:47:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 12:47:52] 
[2025-11-26 12:47:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 12:47:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 12:47:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 12:47:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 12:47:52] 
[2025-11-26 12:47:52] 2025-11-26 17:47:07,691 | INFO     | ***************************************
[2025-11-26 12:47:52] 2025-11-26 17:47:08,194 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 12:47:52] 2025-11-26 17:47:08,239 | INFO     | sufficient remaining disk space (88760909824 B)
[2025-11-26 12:47:52] 2025-11-26 17:47:08,239 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 12:47:52] 2025-11-26 17:47:08,239 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 12:47:52] 2025-11-26 17:47:08,240 | INFO     | update_server=False
[2025-11-26 12:47:52] 2025-11-26 17:47:08,240 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 12:47:52] 2025-11-26 17:47:08,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 12:47:52] 2025-11-26 17:47:08,395 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 12:47:52] 2025-11-26 17:47:08,396 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 12:47:52] 2025-11-26 17:47:08,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:47:52] 2025-11-26 17:47:08,406 | INFO     | will abort loop
[2025-11-26 12:47:52] 2025-11-26 17:47:08,494 | INFO     | all data control threads have been joined
[2025-11-26 12:47:52] 2025-11-26 17:47:08,601 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 12:47:52] 2025-11-26 17:47:08,979 | INFO     | all payload control threads have been joined
[2025-11-26 12:47:52] 2025-11-26 17:47:09,245 | INFO     | [job] retrieve thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:09,328 | INFO     | all job control threads have been joined
[2025-11-26 12:47:52] 2025-11-26 17:47:09,412 | INFO     | [job] job monitor thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:09,479 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:09,502 | INFO     | [data] control thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:09,847 | INFO     | [payload] failed_post thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:09,952 | INFO     | [job] validate thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:09,986 | INFO     | [payload] control thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:10,026 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:10,209 | INFO     | [payload] validate_post thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:10,251 | INFO     | [data] copytool_out thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:10,270 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:10,334 | INFO     | [job] control thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:10,427 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:10,451 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:47:52] 2025-11-26 17:47:10,723 | INFO     | [data] copytool_in thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:11,457 | INFO     | [job] queue monitor thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:12,617 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 12:47:52] 2025-11-26 17:47:38,331 | INFO     | PID=1159218 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 12:47:52] 2025-11-26 17:47:38,333 | INFO     | .. there are 50 such processes running
[2025-11-26 12:47:52] 2025-11-26 17:47:38,334 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 12:47:52] 2025-11-26 17:47:38,334 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 12:47:52] 2025-11-26 17:47:38,334 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 12:47:52] 2025-11-26 17:47:45,939 | INFO     | [monitor] cgroup control has ended
[2025-11-26 12:47:52] 2025-11-26 17:47:46,211 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139819763144512)>', '<ExcThread(monitor, started 139819397129984)>']
[2025-11-26 12:47:52] 2025-11-26 17:47:46,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 12:47:52] 2025-11-26 17:47:46,415 | INFO     | [monitor] control thread has ended
[2025-11-26 12:47:52] 2025-11-26 17:47:51,237 | INFO     | all workflow threads have been joined
[2025-11-26 12:47:52] 2025-11-26 17:47:51,237 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 12:47:52] 2025-11-26 17:47:51,238 | INFO     | traces error code: 0
[2025-11-26 12:47:52] 2025-11-26 17:47:51,238 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 12:47:52] 2025-11-26 17:47:51,700 [wrapper] ==== pilot stdout END ====
[2025-11-26 12:47:52] 2025-11-26 17:47:51,718 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 12:47:52] 2025-11-26 17:47:51,733 [wrapper] pilotpid: 1159218
[2025-11-26 12:47:52] 2025-11-26 17:47:51,745 [wrapper] Pilot exit status: 0
[2025-11-26 12:47:52] 2025-11-26 17:47:51,763 [wrapper] pandaids: 6895881932
[2025-11-26 12:47:52] 2025-11-26 17:47:51,910 [wrapper] cleanup supervisor_pilot 1371101 1159219
[2025-11-26 12:47:52] 2025-11-26 17:47:51,917 [wrapper] Test setup, not cleaning
[2025-11-26 12:47:52] 2025-11-26 17:47:51,938 [wrapper] apfmon messages muted
[2025-11-26 12:47:52] 2025-11-26 17:47:51,960 [wrapper] ==== wrapper stdout END ====
[2025-11-26 12:47:52] 2025-11-26 17:47:51,970 [wrapper] ==== wrapper stderr END ====
[2025-11-26 12:47:52]  *** Error codes and diagnostics ***
[2025-11-26 12:47:52]     "exeErrorCode": 0,
[2025-11-26 12:47:52]     "exeErrorDiag": "",
[2025-11-26 12:47:52]     "pilotErrorCode": 0,
[2025-11-26 12:47:52]     "pilotErrorDiag": "",
[2025-11-26 12:47:52]  *** Listing of results directory ***
[2025-11-26 12:47:52] total 1321904
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 11:11 queuedata.json
[2025-11-26 12:47:52] -rwx------. 1 boincer umatlas     36292 Nov 24 11:13 runpilot2-wrapper.sh
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas       100 Nov 25 20:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 12:47:52] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 20:06 run_atlas
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas       105 Nov 25 20:06 job.xml
[2025-11-26 12:47:52] -rw-r--r--. 2 boincer umatlas 410892199 Nov 25 20:06 EVNT.47483658._001378.pool.root.1
[2025-11-26 12:47:52] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 20:06 input.tar.gz
[2025-11-26 12:47:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 20:06 start_atlas.sh
[2025-11-26 12:47:52] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 20:06 shared
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas         0 Nov 25 20:06 boinc_lockfile
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 20:06 pandaJob.out
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas        57 Nov 25 20:06 setup.sh.local
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas    991877 Nov 25 20:06 agis_schedconf.cvmfs.json
[2025-11-26 12:47:52] drwx------. 5 boincer umatlas      4096 Nov 25 20:06 pilot3
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas       533 Nov 26 12:29 boinc_task_state.xml
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas      6880 Nov 26 12:38 init_data.xml
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas 919665493 Nov 26 12:45 HITS.47556149._003648.pool.root.1
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas      1059 Nov 26 12:46 memory_monitor_summary.json
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas   1516240 Nov 26 12:46 agis_ddmendpoints.agis.ALL.json
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas   2130824 Nov 26 12:46 log.47556149._003648.job.log.tgz.1
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas      8618 Nov 26 12:47 heartbeat.json
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas        95 Nov 26 12:47 pilot_heartbeat.json
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 12:47 boinc_mmap_file
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas      5010 Nov 26 12:47 pilotlog.txt
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas        29 Nov 26 12:47 wrapper_checkpoint.txt
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas   7440689 Nov 26 12:47 log.47556149._003648.job.log.1
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas       353 Nov 26 12:47 output.list
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas       620 Nov 26 12:47 runtime_log
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas   9594880 Nov 26 12:47 result.tar.gz
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 12:47 runtime_log.err
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas       660 Nov 26 12:47 fZHLDmgMoh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm36IKDmAKkp4m.diag
[2025-11-26 12:47:52] -rw-r--r--. 1 boincer umatlas     21155 Nov 26 12:47 stderr.txt
[2025-11-26 12:47:52] HITS file was successfully produced:
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas 919665493 Nov 26 12:45 shared/HITS.pool.root.1
[2025-11-26 12:47:52]  *** Contents of shared directory: ***
[2025-11-26 12:47:52] total 1309352
[2025-11-26 12:47:52] -rw-r--r--. 2 boincer umatlas 410892199 Nov 25 20:06 ATLAS.root_0
[2025-11-26 12:47:52] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 20:06 input.tar.gz
[2025-11-26 12:47:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 20:06 start_atlas.sh
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas 919665493 Nov 26 12:45 HITS.pool.root.1
[2025-11-26 12:47:52] -rw-------. 1 boincer umatlas   9594880 Nov 26 12:47 result.tar.gz
12:47:53 (1155233): run_atlas exited; CPU time 251320.184712
12:47:53 (1155233): called boinc_finish(0)

</stderr_txt>
]]>

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