Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:23:41 (2706296): wrapper (7.7.26015): starting
02:23:41 (2706296): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 02:23:41] Arguments: --nthreads 3
[2025-11-26 02:23:41] Threads: 3
[2025-11-26 02:23:41] Checking for CVMFS
[2025-11-26 02:23:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 02:23:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 02:23:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 02:23:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 02:23:41] 2.9.2.0 2184780 113 61864 153304 2 88 35507387 36864000 0 130560 0 1565099 100.000 2602 15216 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 02:23:41] CVMFS is ok
[2025-11-26 02:23:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 02:23:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 02:23:41] Further information can be found at the LHC@home message board.
[2025-11-26 02:23:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 02:23:41] Checking for apptainer binary...
[2025-11-26 02:23:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 02:23:41] Running /usr/bin/apptainer --version
[2025-11-26 02:23:41] apptainer version 1.4.1-1.1
[2025-11-26 02:23:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 02:23:42] thA335
[2025-11-26 02:23:42] apptainer works
[2025-11-26 02:23:42] Set ATHENA_PROC_NUMBER=3
[2025-11-26 02:23:42] Set ATHENA_CORE_NUMBER=3
[2025-11-26 02:23:42] Starting ATLAS job with PandaID=6896713661
[2025-11-26 02:23:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:28:00]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:28:00] 2025-11-26 01:27:08,297 | INFO     | ***************************************
[2025-11-26 02:28:00] 2025-11-26 01:27:08,800 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 02:28:00] 2025-11-26 01:27:08,814 | INFO     | sufficient remaining disk space (827329609728 B)
[2025-11-26 02:28:00] 2025-11-26 01:27:08,814 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:28:00] 2025-11-26 01:27:08,815 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:28:00] 2025-11-26 01:27:08,815 | INFO     | update_server=False
[2025-11-26 02:28:00] 2025-11-26 01:27:08,815 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:28:00] 2025-11-26 01:27:08,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:28:00] 2025-11-26 01:27:08,815 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:28:00] 2025-11-26 01:27:08,815 | INFO     | aborting loop
[2025-11-26 02:28:00] 2025-11-26 01:27:09,539 | INFO     | all data control threads have been joined
[2025-11-26 02:28:00] 2025-11-26 01:27:09,637 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:28:00] 2025-11-26 01:27:09,820 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:09,821 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:09,821 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:09,861 | INFO     | all payload control threads have been joined
[2025-11-26 02:28:00] 2025-11-26 01:27:09,927 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:10,443 | INFO     | all job control threads have been joined
[2025-11-26 02:28:00] 2025-11-26 01:27:10,477 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:10,545 | INFO     | [data] control thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:10,723 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:10,846 | INFO     | [job] validate thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:10,867 | INFO     | [payload] control thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:10,931 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:11,005 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:11,007 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:11,057 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:11,449 | INFO     | [job] control thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:11,604 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:28:00] 2025-11-26 01:27:11,643 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:15,611 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:28:00] 2025-11-26 01:27:39,003 | INFO     | PID=2710044 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 02:28:00] 2025-11-26 01:27:39,003 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:28:00] 2025-11-26 01:27:39,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:28:00] 2025-11-26 01:27:39,003 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:28:00] 2025-11-26 01:27:54,221 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:28:00] 2025-11-26 01:27:55,401 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139892243945280)>', '<ExcThread(monitor, started 139891740485376)>']
[2025-11-26 02:28:00] 2025-11-26 01:27:56,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:28:00] 2025-11-26 01:27:56,093 | INFO     | [monitor] control thread has ended
[2025-11-26 02:28:00] 2025-11-26 01:28:00,427 | INFO     | all workflow threads have been joined
[2025-11-26 02:28:00] 2025-11-26 01:28:00,427 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:28:00] 2025-11-26 01:28:00,428 | INFO     | traces error code: 0
[2025-11-26 02:28:00] 2025-11-26 01:28:00,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:28:00] 2025-11-26 01:28:00,507 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:28:00] 2025-11-26 01:28:00,510 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:28:00] 2025-11-26 01:28:00,513 [wrapper] pilotpid: 2710044
[2025-11-26 02:28:00] 2025-11-26 01:28:00,516 [wrapper] Pilot exit status: 0
[2025-11-26 02:28:00] 2025-11-26 01:28:00,523 [wrapper] pandaids: 6896713661
[2025-11-26 02:28:00] 2025-11-26 01:28:00,539 [wrapper] cleanup supervisor_pilot 2710050 2710045
[2025-11-26 02:28:00] 2025-11-26 01:28:00,542 [wrapper] Test setup, not cleaning
[2025-11-26 02:28:00] 2025-11-26 01:28:00,545 [wrapper] apfmon messages muted
[2025-11-26 02:28:00] 2025-11-26 01:28:00,547 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:28:00] 2025-11-26 01:28:00,550 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:28:00]  *** Error codes and diagnostics ***
[2025-11-26 02:28:00]     "exeErrorCode": 65,
[2025-11-26 02:28:00]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 02:28:00]     "pilotErrorCode": 1305,
[2025-11-26 02:28:00]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 02:28:00]  *** Listing of results directory ***
[2025-11-26 02:28:00] total 405676
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc    576529 Nov 25 06:12 pilot3.tar.gz
[2025-11-26 02:28:00] -rwx------ 1 boinc boinc     36292 Nov 25 06:30 runpilot2-wrapper.sh
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc      5112 Nov 25 06:30 queuedata.json
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc       100 Nov 26 02:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:28:00] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 02:23 run_atlas
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc       105 Nov 26 02:23 job.xml
[2025-11-26 02:28:00] -rw-r--r-- 2 boinc boinc 411208748 Nov 26 02:23 EVNT.47483658._002105.pool.root.1
[2025-11-26 02:28:00] -rw-r--r-- 2 boinc boinc    590103 Nov 26 02:23 input.tar.gz
[2025-11-26 02:28:00] -rw-r--r-- 2 boinc boinc     15847 Nov 26 02:23 start_atlas.sh
[2025-11-26 02:28:00] drwxrwx--x 2 boinc boinc      4096 Nov 26 02:23 shared
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc         0 Nov 26 02:23 boinc_setup_complete
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc      6196 Nov 26 02:23 init_data.xml
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc         0 Nov 26 02:23 boinc_lockfile
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc      2783 Nov 26 02:23 pandaJob.out
[2025-11-26 02:28:00] -rw------- 1 boinc boinc    991877 Nov 26 02:23 agis_schedconf.cvmfs.json
[2025-11-26 02:28:00] -rw------- 1 boinc boinc   1516240 Nov 26 02:23 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:28:00] drwx------ 5 boinc boinc      4096 Nov 26 02:23 pilot3
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc       523 Nov 26 02:24 boinc_task_state.xml
[2025-11-26 02:28:00] -rw------- 1 boinc boinc       964 Nov 26 02:25 memory_monitor_summary.json
[2025-11-26 02:28:00] -rw------- 1 boinc boinc     55870 Nov 26 02:25 log.47556161._000887.job.log.tgz.1
[2025-11-26 02:28:00] -rw------- 1 boinc boinc        95 Nov 26 02:26 pilot_heartbeat.json
[2025-11-26 02:28:00] -rw------- 1 boinc boinc      8402 Nov 26 02:27 heartbeat.json
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc        23 Nov 26 02:27 wrapper_checkpoint.txt
[2025-11-26 02:28:00] -rw------- 1 boinc boinc      4752 Nov 26 02:28 pilotlog.txt
[2025-11-26 02:28:00] -rw------- 1 boinc boinc     93434 Nov 26 02:28 log.47556161._000887.job.log.1
[2025-11-26 02:28:00] -rw------- 1 boinc boinc       186 Nov 26 02:28 output.list
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc       620 Nov 26 02:28 runtime_log
[2025-11-26 02:28:00] -rw------- 1 boinc boinc    174080 Nov 26 02:28 result.tar.gz
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc      8192 Nov 26 02:28 boinc_mmap_file
[2025-11-26 02:28:00] -rw------- 1 boinc boinc       649 Nov 26 02:28 zqHMDmfo0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtAMKDmFcfoMm.diag
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc      8744 Nov 26 02:28 runtime_log.err
[2025-11-26 02:28:00] -rw-r--r-- 1 boinc boinc      8337 Nov 26 02:28 stderr.txt
[2025-11-26 02:28:00] No HITS result produced
[2025-11-26 02:28:00]  *** Contents of shared directory: ***
[2025-11-26 02:28:00] total 402344
[2025-11-26 02:28:00] -rw-r--r-- 2 boinc boinc 411208748 Nov 26 02:23 ATLAS.root_0
[2025-11-26 02:28:00] -rw-r--r-- 2 boinc boinc    590103 Nov 26 02:23 input.tar.gz
[2025-11-26 02:28:00] -rw-r--r-- 2 boinc boinc     15847 Nov 26 02:23 start_atlas.sh
[2025-11-26 02:28:00] -rw------- 1 boinc boinc    174080 Nov 26 02:28 result.tar.gz
02:28:02 (2706296): run_atlas exited; CPU time 32.181548
02:28:02 (2706296): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN