Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:24 (3495241): wrapper (7.7.26015): starting
00:04:24 (3495241): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 00:04:24] Arguments: --nthreads 12
[2025-11-26 00:04:24] Threads: 12
[2025-11-26 00:04:24] Checking for CVMFS
[2025-11-26 00:04:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:26] 2.13.2.0 12166 35398 280784 153309 1 100 33865185 40960000 21764 16776704 0 65216773 99.727 39435348 33641 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:04:26] CVMFS is ok
[2025-11-26 00:04:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:26] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:26] Checking for apptainer binary...
[2025-11-26 00:04:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:26] Running /usr/bin/apptainer --version
[2025-11-26 00:04:26] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:27] c-211-33-1.aglt2.org
[2025-11-26 00:04:27] apptainer works
[2025-11-26 00:04:27] Set ATHENA_PROC_NUMBER=12
[2025-11-26 00:04:27] Set ATHENA_CORE_NUMBER=12
[2025-11-26 00:04:27] Starting ATLAS job with PandaID=6895883689
[2025-11-26 00:04:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:52:21]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:52:21] 2025-11-26 20:51:20,369 | INFO     | monitor loop #3021: job 0:6895883689 is in state 'finished'
[2025-11-26 15:52:21] 2025-11-26 20:51:20,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:52:21] 2025-11-26 20:51:21,945 | INFO     | time since job start (56754s) is within the limit (172800.0s)
[2025-11-26 15:52:21] 2025-11-26 20:51:22,877 | INFO     | monitor loop #3022: job 0:6895883689 is in state 'finished'
[2025-11-26 15:52:21] 2025-11-26 20:51:22,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:52:21] 2025-11-26 20:51:23,957 | INFO     | time since job start (56756s) is within the limit (172800.0s)
[2025-11-26 15:52:21] 2025-11-26 20:51:25,390 | INFO     | monitor loop #3023: job 0:6895883689 is in state 'finished'
[2025-11-26 15:52:21] 2025-11-26 20:51:25,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:52:21] 2025-11-26 20:51:25,974 | INFO     | PID=3501065 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:52:21] 2025-11-26 20:51:25,975 | INFO     | .. there are 17 such processes running
[2025-11-26 15:52:21] 2025-11-26 20:51:26,979 | INFO     | time since job start (56759s) is within the limit (172800.0s)
[2025-11-26 15:52:21] 2025-11-26 20:51:27,916 | INFO     | monitor loop #3024: job 0:6895883689 is in state 'finished'
[2025-11-26 15:52:21] 2025-11-26 20:51:27,916 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:52:21] 2025-11-26 20:51:28,986 | INFO     | time since job start (56761s) is within the limit (172800.0s)
[2025-11-26 15:52:21] 2025-11-26 20:51:30,421 | INFO     | monitor loop #3025: job 0:6895883689 is in state 'finished'
[2025-11-26 15:52:21] 2025-11-26 20:51:30,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:52:21] 2025-11-26 20:51:30,451 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 15:52:21] 2025-11-26 20:51:30,468 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2561.3819583333334
[2025-11-26 15:52:21] 2025-11-26 20:51:30,530 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895883689/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:52:21] 2025-11-26 20:51:30,531 | INFO     | extracted standard info from prmon json
[2025-11-26 15:52:21] 2025-11-26 20:51:30,531 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:52:21] 2025-11-26 20:51:30,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:52:21] 2025-11-26 20:51:30,635 | INFO     | fitting pss+swap vs Time
[2025-11-26 15:52:21] 2025-11-26 20:51:30,636 | INFO     | sum of square deviations: 247259845110.4031
[2025-11-26 15:52:21] 2025-11-26 20:51:30,672 | INFO     | sum of deviations: 2258302130351.0244
[2025-11-26 15:52:21] 2025-11-26 20:51:30,677 | INFO     | mean x: 1764161958.8371089
[2025-11-26 15:52:21] 2025-11-26 20:51:30,677 | INFO     | mean y: 3502433.0399137
[2025-11-26 15:52:21] 2025-11-26 20:51:30,677 | INFO     | intersect: -16109145005.314636
[2025-11-26 15:52:21] 2025-11-26 20:51:30,678 | INFO     | chi2: 16.272577698143138
[2025-11-26 15:52:21] 2025-11-26 20:51:30,680 | INFO     | sum of square deviations: 243284931830.9379
[2025-11-26 15:52:21] 2025-11-26 20:51:30,717 | INFO     | sum of deviations: 2626736330985.6807
[2025-11-26 15:52:21] 2025-11-26 20:51:30,717 | INFO     | mean x: 1764161806.3470716
[2025-11-26 15:52:21] 2025-11-26 20:51:30,717 | INFO     | mean y: 3516567.4728850327
[2025-11-26 15:52:21] 2025-11-26 20:51:30,717 | INFO     | intersect: -19044058124.450085
[2025-11-26 15:52:21] 2025-11-26 20:51:30,718 | INFO     | chi2: 13.104222324910609
[2025-11-26 15:52:21] 2025-11-26 20:51:30,718 | INFO     | current chi2=13.104222324910609 (change=19.470519250272623 %)
[2025-11-26 15:52:21] 2025-11-26 20:51:30,723 | INFO     | right removable region: 921
[2025-11-26 15:52:21] 2025-11-26 20:51:30,724 | INFO     | sum of square deviations: 243269459498.4047
[2025-11-26 15:52:21] 2025-11-26 20:51:30,761 | INFO     | sum of deviations: 1808065392531.028
[2025-11-26 15:52:21] 2025-11-26 20:51:30,761 | INFO     | mean x: 1764162111.6236444
[2025-11-26 15:52:21] 2025-11-26 20:51:30,761 | INFO     | mean y: 3519668.824295011
[2025-11-26 15:52:21] 2025-11-26 20:51:30,762 | INFO     | intersect: -13108362387.46847
[2025-11-26 15:52:21] 2025-11-26 20:51:30,763 | INFO     | chi2: 12.272858385140488
[2025-11-26 15:52:21] 2025-11-26 20:51:30,763 | INFO     | current chi2=12.272858385140488 (change=24.579506622721844 %)
[2025-11-26 15:52:21] 2025-11-26 20:51:30,763 | INFO     | left removable region: 10
[2025-11-26 15:52:21] 2025-11-26 20:51:30,764 | INFO     | sum of square deviations: 234660437345.6573
[2025-11-26 15:52:21] 2025-11-26 20:51:30,871 | INFO     | sum of deviations: 2024284659168.3213
[2025-11-26 15:52:21] 2025-11-26 20:51:30,871 | INFO     | mean x: 1764162081.4182217
[2025-11-26 15:52:21] 2025-11-26 20:51:30,871 | INFO     | mean y: 3546251.185510428
[2025-11-26 15:52:21] 2025-11-26 20:51:30,872 | INFO     | intersect: -15214895673.22374
[2025-11-26 15:52:21] 2025-11-26 20:51:30,873 | INFO     | chi2: 7.252568737726063
[2025-11-26 15:52:21] 2025-11-26 20:51:30,873 | INFO     | current memory leak: 8.63 B/s (using 911 data points, chi2=7.25)
[2025-11-26 15:52:21] 2025-11-26 20:51:30,878 | INFO     | could have reported an average CPU frequency of 2576 MHz (34 samples)
[2025-11-26 15:52:21] 2025-11-26 20:51:30,879 | INFO     | ..............................
[2025-11-26 15:52:21] 2025-11-26 20:51:30,879 | INFO     | . Timing measurements:
[2025-11-26 15:52:21] 2025-11-26 20:51:30,879 | INFO     | . get job = 0 s
[2025-11-26 15:52:21] 2025-11-26 20:51:30,879 | INFO     | . initial setup = 5 s
[2025-11-26 15:52:21] 2025-11-26 20:51:30,879 | INFO     | . payload setup = 44 s
[2025-11-26 15:52:21] 2025-11-26 20:51:30,879 | INFO     | . stage-in = 0 s
[2025-11-26 15:52:21] 2025-11-26 20:51:30,879 | INFO     | . payload execution = 56614 s
[2025-11-26 15:52:21] 2025-11-26 20:51:30,879 | INFO     | . stage-out = 8 s
[2025-11-26 15:52:21] 2025-11-26 20:51:30,880 | INFO     | . log creation = 2 s
[2025-11-26 15:52:21] 2025-11-26 20:51:30,880 | INFO     | ..............................
[2025-11-26 15:52:21] 2025-11-26 20:51:31,040 | INFO     | time since job start (56764s) is within the limit (172800.0s)
[2025-11-26 15:52:21] 2025-11-26 20:51:31,571 | INFO     | 
[2025-11-26 15:52:21] 2025-11-26 20:51:31,571 | INFO     | job summary report
[2025-11-26 15:52:21] 2025-11-26 20:51:31,571 | INFO     | --------------------------------------------------
[2025-11-26 15:52:21] 2025-11-26 20:51:31,571 | INFO     | PanDA job id: 6895883689
[2025-11-26 15:52:21] 2025-11-26 20:51:31,571 | INFO     | task id: 47556161
[2025-11-26 15:52:21] 2025-11-26 20:51:31,571 | INFO     | errors: (none)
[2025-11-26 15:52:21] 2025-11-26 20:51:31,571 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:52:21] 2025-11-26 20:51:31,571 | INFO     | pilot state: finished 
[2025-11-26 15:52:21] 2025-11-26 20:51:31,571 | INFO     | transexitcode: 0
[2025-11-26 15:52:21] 2025-11-26 20:51:31,571 | INFO     | exeerrorcode: 0
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | exeerrordiag: 
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | exitcode: 0
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | exitmsg: OK
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | cpuconsumptiontime: 277835 s
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | nevents: 1000
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | neventsw: 0
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | pid: 3515806
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | pgrp: 3515806
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | corecount: 12
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | event service: False
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | sizes: {0: 2284035, 1: 2284119, 2: 2284318, 15: 2284318, 26: 2284346, 32: 2284636, 37: 2284792, 56663: 2334557, 56671: 2343551, 56673: 2343607, 56698: 2343853}
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | --------------------------------------------------
[2025-11-26 15:52:21] 2025-11-26 20:51:31,572 | INFO     | 
[2025-11-26 15:52:21] 2025-11-26 20:51:31,573 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 15:52:21] 2025-11-26 20:51:31,628 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,628 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,628 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,629 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,630 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,630 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:52:21] 2025-11-26 20:51:31,630 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,630 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:52:21] 2025-11-26 20:51:31,630 | INFO     | job 6895883689 has completed (purged errors)
[2025-11-26 15:52:21] 2025-11-26 20:51:31,630 | INFO     | overall cleanup function is called
[2025-11-26 15:52:21] 2025-11-26 20:51:32,669 | INFO     | --- collectZombieJob: --- 10, [3515806]
[2025-11-26 15:52:21] 2025-11-26 20:51:32,669 | INFO     | zombie collector waiting for pid 3515806
[2025-11-26 15:52:21] 2025-11-26 20:51:32,669 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:52:21] 2025-11-26 20:51:32,669 | INFO     | collected zombie processes
[2025-11-26 15:52:21] 2025-11-26 20:51:32,669 | INFO     | will attempt to kill all subprocesses of pid=3515806
[2025-11-26 15:52:21] 2025-11-26 20:51:33,491 | INFO     | process IDs to be killed: [3515806] (in reverse order)
[2025-11-26 15:52:21] 2025-11-26 20:51:33,665 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:52:21] 2025-11-26 20:51:33,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:52:21] 2025-11-26 20:51:33,691 | INFO     | did not find any defunct processes belonging to 3515806
[2025-11-26 15:52:21] 2025-11-26 20:51:33,715 | INFO     | did not find any defunct processes belonging to 3515806
[2025-11-26 15:52:21] 2025-11-26 20:51:33,720 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:52:21] 2025-11-26 20:51:33,721 | INFO     | ready for new job
[2025-11-26 15:52:21] 2025-11-26 20:51:33,721 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:52:21] 2025-11-26 20:51:33,730 | INFO     | ***************************************
[2025-11-26 15:52:21] 2025-11-26 20:51:33,730 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:52:21] 2025-11-26 20:51:33,730 | INFO     | ***************************************
[2025-11-26 15:52:21] 2025-11-26 20:51:33,730 | INFO     | 
[2025-11-26 15:52:21] 2025-11-26 20:51:33,740 | INFO     | architecture information:
[2025-11-26 15:52:21] 2025-11-26 20:51:33,753 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:52:21] 2025-11-26 20:51:33,803 | INFO     | cat /etc/os-release:
[2025-11-26 15:52:21] NAME="CentOS Linux"
[2025-11-26 15:52:21] VERSION="7 (Core)"
[2025-11-26 15:52:21] ID="centos"
[2025-11-26 15:52:21] ID_LIKE="rhel fedora"
[2025-11-26 15:52:21] VERSION_ID="7"
[2025-11-26 15:52:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:52:21] ANSI_COLOR="0;31"
[2025-11-26 15:52:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:52:21] HOME_URL="https://www.centos.org/"
[2025-11-26 15:52:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:52:21] 
[2025-11-26 15:52:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:52:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:52:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:52:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:52:21] 
[2025-11-26 15:52:21] 2025-11-26 20:51:33,803 | INFO     | ***************************************
[2025-11-26 15:52:21] 2025-11-26 20:51:34,307 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 15:52:21] 2025-11-26 20:51:34,365 | INFO     | sufficient remaining disk space (123503378432 B)
[2025-11-26 15:52:21] 2025-11-26 20:51:34,366 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:52:21] 2025-11-26 20:51:34,366 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:52:21] 2025-11-26 20:51:34,366 | INFO     | update_server=False
[2025-11-26 15:52:21] 2025-11-26 20:51:34,366 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:52:21] 2025-11-26 20:51:34,367 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:52:21] 2025-11-26 20:51:34,367 | INFO     | aborting loop
[2025-11-26 15:52:21] 2025-11-26 20:51:34,367 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:52:21] 2025-11-26 20:51:34,658 | INFO     | all job control threads have been joined
[2025-11-26 15:52:21] 2025-11-26 20:51:35,050 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:52:21] 2025-11-26 20:51:35,300 | INFO     | all payload control threads have been joined
[2025-11-26 15:52:21] 2025-11-26 20:51:35,372 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:35,406 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:35,420 | INFO     | all data control threads have been joined
[2025-11-26 15:52:21] 2025-11-26 20:51:35,614 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:35,614 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:35,617 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:35,664 | INFO     | [job] control thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:35,896 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:36,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:52:21] 2025-11-26 20:51:36,306 | INFO     | [payload] control thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:36,434 | INFO     | [data] control thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:36,442 | INFO     | [job] validate thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:36,515 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:36,537 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:36,584 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:37,057 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:37,147 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:51:38,376 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:52:21] 2025-11-26 20:52:04,647 | INFO     | PID=3501065 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:52:21] 2025-11-26 20:52:04,647 | INFO     | .. there are 17 such processes running
[2025-11-26 15:52:21] 2025-11-26 20:52:04,647 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:52:21] 2025-11-26 20:52:04,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:52:21] 2025-11-26 20:52:04,648 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:52:21] 2025-11-26 20:52:14,929 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:52:21] 2025-11-26 20:52:15,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955494946624)>', '<ExcThread(monitor, started 139954856388352)>']
[2025-11-26 15:52:21] 2025-11-26 20:52:15,732 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:52:21] 2025-11-26 20:52:15,732 | INFO     | [monitor] control thread has ended
[2025-11-26 15:52:21] 2025-11-26 20:52:20,431 | INFO     | all workflow threads have been joined
[2025-11-26 15:52:21] 2025-11-26 20:52:20,431 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:52:21] 2025-11-26 20:52:20,431 | INFO     | traces error code: 0
[2025-11-26 15:52:21] 2025-11-26 20:52:20,431 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:52:21] 2025-11-26 20:52:21,002 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:52:21] 2025-11-26 20:52:21,018 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:52:21] 2025-11-26 20:52:21,032 [wrapper] pilotpid: 3501065
[2025-11-26 15:52:21] 2025-11-26 20:52:21,048 [wrapper] Pilot exit status: 0
[2025-11-26 15:52:21] 2025-11-26 20:52:21,139 [wrapper] pandaids: 6895883689
[2025-11-26 15:52:21] 2025-11-26 20:52:21,283 [wrapper] cleanup supervisor_pilot 1158691 3501066
[2025-11-26 15:52:21] 2025-11-26 20:52:21,287 [wrapper] Test setup, not cleaning
[2025-11-26 15:52:21] 2025-11-26 20:52:21,291 [wrapper] apfmon messages muted
[2025-11-26 15:52:21] 2025-11-26 20:52:21,295 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:52:21] 2025-11-26 20:52:21,299 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:52:21]  *** Error codes and diagnostics ***
[2025-11-26 15:52:21]     "exeErrorCode": 0,
[2025-11-26 15:52:21]     "exeErrorDiag": "",
[2025-11-26 15:52:21]     "pilotErrorCode": 0,
[2025-11-26 15:52:21]     "pilotErrorDiag": "",
[2025-11-26 15:52:21]  *** Listing of results directory ***
[2025-11-26 15:52:21] total 1329780
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 12:01 queuedata.json
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-26 15:52:21] -rwx------. 1 boincer umatlas     36292 Nov 24 12:05 runpilot2-wrapper.sh
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:52:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-26 15:52:21] -rw-r--r--. 2 boincer umatlas 407789505 Nov 26 00:04 EVNT.47483658._002056.pool.root.1
[2025-11-26 15:52:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 15:52:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-26 15:52:21] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:04 input.tar.gz
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:04 pandaJob.out
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas    991877 Nov 26 00:05 agis_schedconf.cvmfs.json
[2025-11-26 15:52:21] drwx------. 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas       533 Nov 26 15:19 boinc_task_state.xml
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas      6881 Nov 26 15:45 init_data.xml
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas 931695473 Nov 26 15:50 HITS.47556161._000400.pool.root.1
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas      1061 Nov 26 15:50 memory_monitor_summary.json
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas   1516240 Nov 26 15:51 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas   2489969 Nov 26 15:51 log.47556161._000400.job.log.tgz.1
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas        95 Nov 26 15:51 pilot_heartbeat.json
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas      8626 Nov 26 15:51 heartbeat.json
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas        29 Nov 26 15:52 wrapper_checkpoint.txt
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 15:52 boinc_mmap_file
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas      4825 Nov 26 15:52 pilotlog.txt
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas   6658459 Nov 26 15:52 log.47556161._000400.job.log.1
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas       353 Nov 26 15:52 output.list
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas       620 Nov 26 15:52 runtime_log
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas   9164800 Nov 26 15:52 result.tar.gz
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas      9355 Nov 26 15:52 runtime_log.err
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas       662 Nov 26 15:52 qY0MDmABph8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmf8IKDmOmO2En.diag
[2025-11-26 15:52:21] -rw-r--r--. 1 boincer umatlas     21900 Nov 26 15:52 stderr.txt
[2025-11-26 15:52:21] HITS file was successfully produced:
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas 931695473 Nov 26 15:50 shared/HITS.pool.root.1
[2025-11-26 15:52:21]  *** Contents of shared directory: ***
[2025-11-26 15:52:21] total 1317644
[2025-11-26 15:52:21] -rw-r--r--. 2 boincer umatlas 407789505 Nov 26 00:04 ATLAS.root_0
[2025-11-26 15:52:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 15:52:21] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:04 input.tar.gz
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas 931695473 Nov 26 15:50 HITS.pool.root.1
[2025-11-26 15:52:21] -rw-------. 1 boincer umatlas   9164800 Nov 26 15:52 result.tar.gz
15:52:23 (3495241): run_atlas exited; CPU time 279036.554330
15:52:23 (3495241): called boinc_finish(0)

</stderr_txt>
]]>

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