Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:19:38 (2842862): wrapper (7.7.26015): starting
20:19:38 (2842862): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 20:19:38] Arguments: --nthreads 8
[2025-11-25 20:19:38] Threads: 8
[2025-11-25 20:19:38] Checking for CVMFS
[2025-11-25 20:19:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:19:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:19:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:19:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:19:40] 2.13.3.0 11830 29247 355840 153304 1 69 23223696 32935937 40934 16776704 0 159475908 99.555 174648036 33008 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 20:19:40] CVMFS is ok
[2025-11-25 20:19:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:19:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:19:40] Further information can be found at the LHC@home message board.
[2025-11-25 20:19:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:19:40] Checking for apptainer binary...
[2025-11-25 20:19:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:19:40] Running /usr/bin/apptainer --version
[2025-11-25 20:19:40] apptainer version 1.4.4-1.el9
[2025-11-25 20:19:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:19:41] c6-8-25-1.aglt2.org
[2025-11-25 20:19:41] apptainer works
[2025-11-25 20:19:41] Set ATHENA_PROC_NUMBER=8
[2025-11-25 20:19:41] Set ATHENA_CORE_NUMBER=8
[2025-11-25 20:19:41] Starting ATLAS job with PandaID=6891559102
[2025-11-25 20:19:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:42:00]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:42:00] 2025-11-27 04:40:54,340 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:42:00] 2025-11-27 04:40:55,487 | INFO     | time since job start (98405s) is within the limit (172800.0s)
[2025-11-26 23:42:00] 2025-11-27 04:40:56,870 | INFO     | monitor loop #5174: job 0:6891559102 is in state 'finished'
[2025-11-26 23:42:00] 2025-11-27 04:40:56,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:42:00] 2025-11-27 04:40:58,232 | INFO     | PID=2849617 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:42:00] 2025-11-27 04:40:58,233 | INFO     | .. there are 52 such processes running
[2025-11-26 23:42:00] 2025-11-27 04:40:59,233 | INFO     | time since job start (98409s) is within the limit (172800.0s)
[2025-11-26 23:42:00] 2025-11-27 04:40:59,400 | INFO     | monitor loop #5175: job 0:6891559102 is in state 'finished'
[2025-11-26 23:42:00] 2025-11-27 04:40:59,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:42:00] 2025-11-27 04:41:01,243 | INFO     | time since job start (98411s) is within the limit (172800.0s)
[2025-11-26 23:42:00] 2025-11-27 04:41:01,912 | INFO     | monitor loop #5176: job 0:6891559102 is in state 'finished'
[2025-11-26 23:42:00] 2025-11-27 04:41:01,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:42:00] 2025-11-27 04:41:03,251 | INFO     | time since job start (98413s) is within the limit (172800.0s)
[2025-11-26 23:42:00] 2025-11-27 04:41:04,388 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 23:42:00] 2025-11-27 04:41:04,395 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2589.729635416668
[2025-11-26 23:42:00] 2025-11-27 04:41:04,413 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6891559102/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:42:00] 2025-11-27 04:41:04,414 | INFO     | extracted standard info from prmon json
[2025-11-26 23:42:00] 2025-11-27 04:41:04,415 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:42:00] 2025-11-27 04:41:04,415 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:42:00] 2025-11-27 04:41:04,457 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:42:00] 2025-11-27 04:41:04,459 | INFO     | sum of square deviations: 1294038229274.494
[2025-11-26 23:42:00] 2025-11-27 04:41:04,467 | INFO     | monitor loop #5177: job 0:6891559102 is in state 'finished'
[2025-11-26 23:42:00] 2025-11-27 04:41:04,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:42:00] 2025-11-27 04:41:04,589 | INFO     | sum of deviations: 5691954055270.358
[2025-11-26 23:42:00] 2025-11-27 04:41:04,590 | INFO     | mean x: 1764169279.2409937
[2025-11-26 23:42:00] 2025-11-27 04:41:04,590 | INFO     | mean y: 2889998.8521739133
[2025-11-26 23:42:00] 2025-11-27 04:41:04,590 | INFO     | intersect: -7756981584.531413
[2025-11-26 23:42:00] 2025-11-27 04:41:04,596 | INFO     | chi2: 18.80464812285433
[2025-11-26 23:42:00] 2025-11-27 04:41:04,599 | INFO     | sum of square deviations: 1282020966446.8018
[2025-11-26 23:42:00] 2025-11-27 04:41:04,762 | INFO     | sum of deviations: 6249639993081.678
[2025-11-26 23:42:00] 2025-11-27 04:41:04,762 | INFO     | mean x: 1764169126.7526479
[2025-11-26 23:42:00] 2025-11-27 04:41:04,762 | INFO     | mean y: 2897073.8380062305
[2025-11-26 23:42:00] 2025-11-27 04:41:04,762 | INFO     | intersect: -8597135388.712858
[2025-11-26 23:42:00] 2025-11-27 04:41:04,774 | INFO     | chi2: 15.418123082023843
[2025-11-26 23:42:00] 2025-11-27 04:41:04,774 | INFO     | current chi2=15.418123082023843 (change=18.008978518000855 %)
[2025-11-26 23:42:00] 2025-11-27 04:41:04,774 | INFO     | right removable region: 1604
[2025-11-26 23:42:00] 2025-11-27 04:41:04,776 | INFO     | sum of square deviations: 1282017292416.7986
[2025-11-26 23:42:00] 2025-11-27 04:41:04,945 | INFO     | sum of deviations: 5035232341271.725
[2025-11-26 23:42:00] 2025-11-27 04:41:04,945 | INFO     | mean x: 1764169431.7526479
[2025-11-26 23:42:00] 2025-11-27 04:41:04,945 | INFO     | mean y: 2898329.830529595
[2025-11-26 23:42:00] 2025-11-27 04:41:04,945 | INFO     | intersect: -6926027692.296734
[2025-11-26 23:42:00] 2025-11-27 04:41:04,955 | INFO     | chi2: 14.546732495795567
[2025-11-26 23:42:00] 2025-11-27 04:41:04,956 | INFO     | current chi2=14.546732495795567 (change=22.64288913698887 %)
[2025-11-26 23:42:00] 2025-11-27 04:41:04,956 | INFO     | left removable region: 10
[2025-11-26 23:42:00] 2025-11-27 04:41:04,958 | INFO     | sum of square deviations: 1255838089736.3228
[2025-11-26 23:42:00] 2025-11-27 04:41:05,119 | INFO     | sum of deviations: 5140753011757.028
[2025-11-26 23:42:00] 2025-11-27 04:41:05,120 | INFO     | mean x: 1764169401.2785444
[2025-11-26 23:42:00] 2025-11-27 04:41:05,120 | INFO     | mean y: 2913797.0156838144
[2025-11-26 23:42:00] 2025-11-27 04:41:05,120 | INFO     | intersect: -7218685258.620893
[2025-11-26 23:42:00] 2025-11-27 04:41:05,130 | INFO     | chi2: 7.692543649205909
[2025-11-26 23:42:00] 2025-11-27 04:41:05,130 | INFO     | current memory leak: 4.09 B/s (using 1594 data points, chi2=7.69)
[2025-11-26 23:42:00] 2025-11-27 04:41:05,132 | INFO     | could have reported an average CPU frequency of 2637 MHz (57 samples)
[2025-11-26 23:42:00] 2025-11-27 04:41:05,132 | INFO     | ..............................
[2025-11-26 23:42:00] 2025-11-27 04:41:05,133 | INFO     | . Timing measurements:
[2025-11-26 23:42:00] 2025-11-27 04:41:05,133 | INFO     | . get job = 0 s
[2025-11-26 23:42:00] 2025-11-27 04:41:05,133 | INFO     | . initial setup = 5 s
[2025-11-26 23:42:00] 2025-11-27 04:41:05,133 | INFO     | . payload setup = 46 s
[2025-11-26 23:42:00] 2025-11-27 04:41:05,133 | INFO     | . stage-in = 0 s
[2025-11-26 23:42:00] 2025-11-27 04:41:05,133 | INFO     | . payload execution = 98242 s
[2025-11-26 23:42:00] 2025-11-27 04:41:05,133 | INFO     | . stage-out = 11 s
[2025-11-26 23:42:00] 2025-11-27 04:41:05,133 | INFO     | . log creation = 3 s
[2025-11-26 23:42:00] 2025-11-27 04:41:05,141 | INFO     | ..............................
[2025-11-26 23:42:00] 2025-11-27 04:41:05,370 | INFO     | time since job start (98415s) is within the limit (172800.0s)
[2025-11-26 23:42:00] 2025-11-27 04:41:05,572 | INFO     | 
[2025-11-26 23:42:00] 2025-11-27 04:41:05,572 | INFO     | job summary report
[2025-11-26 23:42:00] 2025-11-27 04:41:05,572 | INFO     | --------------------------------------------------
[2025-11-26 23:42:00] 2025-11-27 04:41:05,572 | INFO     | PanDA job id: 6891559102
[2025-11-26 23:42:00] 2025-11-27 04:41:05,572 | INFO     | task id: 47493068
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | errors: (none)
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | pilot state: finished 
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | transexitcode: 0
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | exeerrorcode: 0
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | exeerrordiag: 
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | exitcode: 0
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | exitmsg: OK
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | cpuconsumptiontime: 256749 s
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | nevents: 1000
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | neventsw: 0
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | pid: 2860541
[2025-11-26 23:42:00] 2025-11-27 04:41:05,573 | INFO     | pgrp: 2860541
[2025-11-26 23:42:00] 2025-11-27 04:41:05,574 | INFO     | corecount: 8
[2025-11-26 23:42:00] 2025-11-27 04:41:05,574 | INFO     | event service: False
[2025-11-26 23:42:00] 2025-11-27 04:41:05,574 | INFO     | sizes: {0: 2284073, 1: 2284157, 2: 2284328, 3: 2284356, 4: 2284384, 15: 2284412, 26: 2284568, 31: 2284858, 37: 2284886, 98293: 2353873, 98294: 2353872, 98306: 2363
[2025-11-26 23:42:00] 2025-11-27 04:41:05,574 | INFO     | --------------------------------------------------
[2025-11-26 23:42:00] 2025-11-27 04:41:05,574 | INFO     | 
[2025-11-26 23:42:00] 2025-11-27 04:41:05,574 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 23:42:00] 2025-11-27 04:41:05,843 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,843 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,843 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,843 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,843 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,844 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,845 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:42:00] 2025-11-27 04:41:05,845 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,845 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:42:00] 2025-11-27 04:41:05,845 | INFO     | job 6891559102 has completed (purged errors)
[2025-11-26 23:42:00] 2025-11-27 04:41:05,845 | INFO     | overall cleanup function is called
[2025-11-26 23:42:00] 2025-11-27 04:41:06,881 | INFO     | --- collectZombieJob: --- 10, [2860541]
[2025-11-26 23:42:00] 2025-11-27 04:41:06,882 | INFO     | zombie collector waiting for pid 2860541
[2025-11-26 23:42:00] 2025-11-27 04:41:06,882 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:42:00] 2025-11-27 04:41:06,882 | INFO     | collected zombie processes
[2025-11-26 23:42:00] 2025-11-27 04:41:06,882 | INFO     | will attempt to kill all subprocesses of pid=2860541
[2025-11-26 23:42:00] 2025-11-27 04:41:08,491 | INFO     | process IDs to be killed: [2860541] (in reverse order)
[2025-11-26 23:42:00] 2025-11-27 04:41:08,966 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:42:00] 2025-11-27 04:41:08,966 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:42:00] 2025-11-27 04:41:09,019 | INFO     | did not find any defunct processes belonging to 2860541
[2025-11-26 23:42:00] 2025-11-27 04:41:09,070 | INFO     | did not find any defunct processes belonging to 2860541
[2025-11-26 23:42:00] 2025-11-27 04:41:09,076 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:42:00] 2025-11-27 04:41:09,076 | INFO     | ready for new job
[2025-11-26 23:42:00] 2025-11-27 04:41:09,076 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:42:00] 2025-11-27 04:41:09,087 | INFO     | ***************************************
[2025-11-26 23:42:00] 2025-11-27 04:41:09,091 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:42:00] 2025-11-27 04:41:09,091 | INFO     | ***************************************
[2025-11-26 23:42:00] 2025-11-27 04:41:09,091 | INFO     | 
[2025-11-26 23:42:00] 2025-11-27 04:41:09,101 | INFO     | architecture information:
[2025-11-26 23:42:00] 2025-11-27 04:41:09,105 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:42:00] 2025-11-27 04:41:09,152 | INFO     | cat /etc/os-release:
[2025-11-26 23:42:00] NAME="CentOS Linux"
[2025-11-26 23:42:00] VERSION="7 (Core)"
[2025-11-26 23:42:00] ID="centos"
[2025-11-26 23:42:00] ID_LIKE="rhel fedora"
[2025-11-26 23:42:00] VERSION_ID="7"
[2025-11-26 23:42:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:42:00] ANSI_COLOR="0;31"
[2025-11-26 23:42:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:42:00] HOME_URL="https://www.centos.org/"
[2025-11-26 23:42:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:42:00] 
[2025-11-26 23:42:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:42:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:42:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:42:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:42:00] 
[2025-11-26 23:42:00] 2025-11-27 04:41:09,152 | INFO     | ***************************************
[2025-11-26 23:42:00] 2025-11-27 04:41:09,655 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 23:42:00] 2025-11-27 04:41:09,710 | INFO     | sufficient remaining disk space (67498934272 B)
[2025-11-26 23:42:00] 2025-11-27 04:41:09,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:42:00] 2025-11-27 04:41:09,710 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:42:00] 2025-11-27 04:41:09,710 | INFO     | update_server=False
[2025-11-26 23:42:00] 2025-11-27 04:41:09,710 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:42:00] 2025-11-27 04:41:09,711 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:42:00] 2025-11-27 04:41:09,855 | INFO     | all job control threads have been joined
[2025-11-26 23:42:00] 2025-11-27 04:41:10,143 | INFO     | all payload control threads have been joined
[2025-11-26 23:42:00] 2025-11-27 04:41:10,552 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:42:00] 2025-11-27 04:41:10,554 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:42:00] 2025-11-27 04:41:10,554 | INFO     | aborting loop
[2025-11-26 23:42:00] 2025-11-27 04:41:10,587 | INFO     | all data control threads have been joined
[2025-11-26 23:42:00] 2025-11-27 04:41:10,600 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:42:00] 2025-11-27 04:41:10,737 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:10,865 | INFO     | [job] control thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:10,961 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:10,977 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:11,055 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:11,155 | INFO     | [payload] control thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:11,156 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:11,284 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:11,310 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:11,565 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:11,593 | INFO     | [data] control thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:11,618 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:12,049 | INFO     | [job] validate thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:12,050 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:12,562 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:13,744 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:42:00] 2025-11-27 04:41:37,496 | INFO     | 98423s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 23:42:00] 2025-11-27 04:41:39,992 | INFO     | PID=2849617 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:42:00] 2025-11-27 04:41:39,993 | INFO     | .. there are 52 such processes running
[2025-11-26 23:42:00] 2025-11-27 04:41:39,993 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:42:00] 2025-11-27 04:41:39,994 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:42:00] 2025-11-27 04:41:39,994 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:42:00] 2025-11-27 04:41:52,916 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:42:00] 2025-11-27 04:41:53,932 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139699624429376)>', '<ExcThread(monitor, started 139699263870720)>']
[2025-11-26 23:42:00] 2025-11-27 04:41:54,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:42:00] 2025-11-27 04:41:54,159 | INFO     | [monitor] control thread has ended
[2025-11-26 23:42:00] 2025-11-27 04:41:58,967 | INFO     | all workflow threads have been joined
[2025-11-26 23:42:00] 2025-11-27 04:41:58,968 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:42:00] 2025-11-27 04:41:58,968 | INFO     | traces error code: 0
[2025-11-26 23:42:00] 2025-11-27 04:41:58,968 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:42:00] 2025-11-27 04:41:59,275 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:42:00] 2025-11-27 04:41:59,304 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:42:00] 2025-11-27 04:41:59,323 [wrapper] pilotpid: 2849617
[2025-11-26 23:42:00] 2025-11-27 04:41:59,360 [wrapper] Pilot exit status: 0
[2025-11-26 23:42:00] 2025-11-27 04:41:59,454 [wrapper] pandaids: 6891559102
[2025-11-26 23:42:00] 2025-11-27 04:41:59,747 [wrapper] cleanup supervisor_pilot 3265269 2849618
[2025-11-26 23:42:00] 2025-11-27 04:41:59,810 [wrapper] Test setup, not cleaning
[2025-11-26 23:42:00] 2025-11-27 04:41:59,856 [wrapper] apfmon messages muted
[2025-11-26 23:42:00] 2025-11-27 04:41:59,908 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:42:00] 2025-11-27 04:41:59,954 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:42:00]  *** Error codes and diagnostics ***
[2025-11-26 23:42:00]     "exeErrorCode": 0,
[2025-11-26 23:42:00]     "exeErrorDiag": "",
[2025-11-26 23:42:00]     "pilotErrorCode": 0,
[2025-11-26 23:42:00]     "pilotErrorDiag": "",
[2025-11-26 23:42:00]  *** Listing of results directory ***
[2025-11-26 23:42:00] total 1326628
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-26 23:42:00] -rwx------. 1 boincer umatlas     36292 Nov 18 10:24 runpilot2-wrapper.sh
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:24 queuedata.json
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas       100 Nov 25 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:42:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 20:19 run_atlas
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas       105 Nov 25 20:19 job.xml
[2025-11-26 23:42:00] -rw-r--r--. 2 boincer umatlas 410332526 Nov 25 20:19 EVNT.47493065._000078.pool.root.1
[2025-11-26 23:42:00] -rw-r--r--. 2 boincer umatlas     15120 Nov 25 20:19 start_atlas.sh
[2025-11-26 23:42:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 20:19 shared
[2025-11-26 23:42:00] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 20:19 input.tar.gz
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas         0 Nov 25 20:19 boinc_lockfile
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas      2771 Nov 25 20:19 pandaJob.out
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas    991877 Nov 25 20:20 agis_schedconf.cvmfs.json
[2025-11-26 23:42:00] drwx------. 5 boincer umatlas      4096 Nov 25 20:20 pilot3
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas       533 Nov 26 23:17 boinc_task_state.xml
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas      6878 Nov 26 23:36 init_data.xml
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas 916276025 Nov 26 23:38 HITS.47493068._000773.pool.root.1
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas      1059 Nov 26 23:40 memory_monitor_summary.json
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:40 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas   2519233 Nov 26 23:40 log.47493068._000773.job.log.tgz.1
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas      8633 Nov 26 23:41 heartbeat.json
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas        95 Nov 26 23:41 pilot_heartbeat.json
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:41 wrapper_checkpoint.txt
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:41 boinc_mmap_file
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas      4940 Nov 26 23:41 pilotlog.txt
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas  11451580 Nov 26 23:41 log.47493068._000773.job.log.1
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas       353 Nov 26 23:42 output.list
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:42 runtime_log
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas  13987840 Nov 26 23:42 result.tar.gz
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas      8709 Nov 26 23:42 runtime_log.err
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas       662 Nov 26 23:42 B5kMDmUkcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlLFKDmZz23Mm.diag
[2025-11-26 23:42:00] -rw-r--r--. 1 boincer umatlas     21918 Nov 26 23:42 stderr.txt
[2025-11-26 23:42:00] HITS file was successfully produced:
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas 916276025 Nov 26 23:38 shared/HITS.pool.root.1
[2025-11-26 23:42:00]  *** Contents of shared directory: ***
[2025-11-26 23:42:00] total 1309784
[2025-11-26 23:42:00] -rw-r--r--. 2 boincer umatlas 410332526 Nov 25 20:19 ATLAS.root_0
[2025-11-26 23:42:00] -rw-r--r--. 2 boincer umatlas     15120 Nov 25 20:19 start_atlas.sh
[2025-11-26 23:42:00] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 20:19 input.tar.gz
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas 916276025 Nov 26 23:38 HITS.pool.root.1
[2025-11-26 23:42:00] -rw-------. 1 boincer umatlas  13987840 Nov 26 23:42 result.tar.gz
23:42:02 (2842862): run_atlas exited; CPU time 260793.568532
23:42:02 (2842862): called boinc_finish(0)

</stderr_txt>
]]>

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