Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:29:22 (10480): wrapper (7.7.26015): starting
20:29:22 (10480): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 20:29:22] Arguments: --nthreads 8
[2025-11-25 20:29:22] Threads: 8
[2025-11-25 20:29:22] Checking for CVMFS
[2025-11-25 20:29:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:29:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:29:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:29:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:29:23] 2.11.2.0 5524 117026 139808 153304 3 82 15455710 18432001 1885 130560 0 85377557 99.974 4965126 32719 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 20:29:23] CVMFS is ok
[2025-11-25 20:29:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:29:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:29:23] Further information can be found at the LHC@home message board.
[2025-11-25 20:29:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:29:23] Checking for apptainer binary...
[2025-11-25 20:29:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:29:23] Running /usr/bin/apptainer --version
[2025-11-25 20:29:23] apptainer version 1.3.2-1.el7
[2025-11-25 20:29:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:29:23] c-206-5.aglt2.org
[2025-11-25 20:29:23] apptainer works
[2025-11-25 20:29:23] Set ATHENA_PROC_NUMBER=8
[2025-11-25 20:29:23] Set ATHENA_CORE_NUMBER=8
[2025-11-25 20:29:23] Starting ATLAS job with PandaID=6896577792
[2025-11-25 20:29:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:15:45]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:15:45] 2025-11-26 21:15:10,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,531 | INFO     | time since job start (71136s) is within the limit (172800.0s)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,533 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 16:15:45] 2025-11-26 21:15:11,537 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2433.5416666666665
[2025-11-26 16:15:45] 2025-11-26 21:15:11,540 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896577792/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,540 | INFO     | extracted standard info from prmon json
[2025-11-26 16:15:45] 2025-11-26 21:15:11,540 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:15:45] 2025-11-26 21:15:11,540 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:15:45] 2025-11-26 21:15:11,556 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:15:45] 2025-11-26 21:15:11,557 | INFO     | sum of square deviations: 491558069247.8292
[2025-11-26 16:15:45] 2025-11-26 21:15:11,580 | INFO     | sum of deviations: 2212328258474.3027
[2025-11-26 16:15:45] 2025-11-26 21:15:11,581 | INFO     | mean x: 1764156135.1140652
[2025-11-26 16:15:45] 2025-11-26 21:15:11,581 | INFO     | mean y: 2879244.396226415
[2025-11-26 16:15:45] 2025-11-26 21:15:11,581 | INFO     | intersect: -7936960856.379195
[2025-11-26 16:15:45] 2025-11-26 21:15:11,582 | INFO     | chi2: 5.539787286203816
[2025-11-26 16:15:45] 2025-11-26 21:15:11,583 | INFO     | sum of square deviations: 485261732358.4354
[2025-11-26 16:15:45] 2025-11-26 21:15:11,607 | INFO     | sum of deviations: 2574082102572.294
[2025-11-26 16:15:45] 2025-11-26 21:15:11,607 | INFO     | mean x: 1764155982.6167097
[2025-11-26 16:15:45] 2025-11-26 21:15:11,607 | INFO     | mean y: 2888001.913006029
[2025-11-26 16:15:45] 2025-11-26 21:15:11,607 | INFO     | intersect: -9355118282.508512
[2025-11-26 16:15:45] 2025-11-26 21:15:11,608 | INFO     | chi2: 2.7489724243691853
[2025-11-26 16:15:45] 2025-11-26 21:15:11,608 | INFO     | current chi2=2.7489724243691853 (change=50.37765382769884 %)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,609 | INFO     | sum of square deviations: 479019396481.519
[2025-11-26 16:15:45] 2025-11-26 21:15:11,643 | INFO     | sum of deviations: 2691963851560.7637
[2025-11-26 16:15:45] 2025-11-26 21:15:11,644 | INFO     | mean x: 1764155830.1193771
[2025-11-26 16:15:45] 2025-11-26 21:15:11,644 | INFO     | mean y: 2890880.3858131487
[2025-11-26 16:15:45] 2025-11-26 21:15:11,644 | INFO     | intersect: -9911203951.857077
[2025-11-26 16:15:45] 2025-11-26 21:15:11,646 | INFO     | chi2: 2.351385574128533
[2025-11-26 16:15:45] 2025-11-26 21:15:11,646 | INFO     | current chi2=2.351385574128533 (change=14.463107985955425 %)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,646 | INFO     | right removable region: 1155
[2025-11-26 16:15:45] 2025-11-26 21:15:11,648 | INFO     | sum of square deviations: 485261295598.4347
[2025-11-26 16:15:45] 2025-11-26 21:15:11,672 | INFO     | sum of deviations: 1908063958461.908
[2025-11-26 16:15:45] 2025-11-26 21:15:11,672 | INFO     | mean x: 1764156287.6167097
[2025-11-26 16:15:45] 2025-11-26 21:15:11,672 | INFO     | mean y: 2886605.1593453917
[2025-11-26 16:15:45] 2025-11-26 21:15:11,672 | INFO     | intersect: -6933836063.6952305
[2025-11-26 16:15:45] 2025-11-26 21:15:11,673 | INFO     | chi2: 3.4869866538493692
[2025-11-26 16:15:45] 2025-11-26 21:15:11,674 | INFO     | current chi2=3.4869866538493692 (change=37.05558582486918 %)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,675 | INFO     | sum of square deviations: 479018806490.4678
[2025-11-26 16:15:45] 2025-11-26 21:15:11,698 | INFO     | sum of deviations: 1830270347665.8232
[2025-11-26 16:15:45] 2025-11-26 21:15:11,699 | INFO     | mean x: 1764156440.115917
[2025-11-26 16:15:45] 2025-11-26 21:15:11,699 | INFO     | mean y: 2888505.3520761244
[2025-11-26 16:15:45] 2025-11-26 21:15:11,699 | INFO     | intersect: -6737730395.697508
[2025-11-26 16:15:45] 2025-11-26 21:15:11,700 | INFO     | chi2: 3.432400278559154
[2025-11-26 16:15:45] 2025-11-26 21:15:11,700 | INFO     | current chi2=3.432400278559154 (change=1.5654311504162526 %)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,700 | INFO     | left removable region: 20
[2025-11-26 16:15:45] 2025-11-26 21:15:11,701 | INFO     | sum of square deviations: 453384914038.6042
[2025-11-26 16:15:45] 2025-11-26 21:15:11,724 | INFO     | sum of deviations: 2216863049609.31
[2025-11-26 16:15:45] 2025-11-26 21:15:11,724 | INFO     | mean x: 1764156409.6229074
[2025-11-26 16:15:45] 2025-11-26 21:15:11,724 | INFO     | mean y: 2903394.6572687225
[2025-11-26 16:15:45] 2025-11-26 21:15:11,724 | INFO     | intersect: -8623085333.965162
[2025-11-26 16:15:45] 2025-11-26 21:15:11,725 | INFO     | chi2: 0.16589388287166365
[2025-11-26 16:15:45] 2025-11-26 21:15:11,725 | INFO     | current memory leak: 4.89 B/s (using 1135 data points, chi2=0.17)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,726 | INFO     | could have reported an average CPU frequency of 2632 MHz (42 samples)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,726 | INFO     | ..............................
[2025-11-26 16:15:45] 2025-11-26 21:15:11,726 | INFO     | . Timing measurements:
[2025-11-26 16:15:45] 2025-11-26 21:15:11,727 | INFO     | . get job = 0 s
[2025-11-26 16:15:45] 2025-11-26 21:15:11,727 | INFO     | . initial setup = 2 s
[2025-11-26 16:15:45] 2025-11-26 21:15:11,727 | INFO     | . payload setup = 5 s
[2025-11-26 16:15:45] 2025-11-26 21:15:11,727 | INFO     | . stage-in = 0 s
[2025-11-26 16:15:45] 2025-11-26 21:15:11,727 | INFO     | . payload execution = 71099 s
[2025-11-26 16:15:45] 2025-11-26 21:15:11,727 | INFO     | . stage-out = 4 s
[2025-11-26 16:15:45] 2025-11-26 21:15:11,727 | INFO     | . log creation = 0 s
[2025-11-26 16:15:45] 2025-11-26 21:15:11,727 | INFO     | ..............................
[2025-11-26 16:15:45] 2025-11-26 21:15:11,835 | INFO     | 
[2025-11-26 16:15:45] 2025-11-26 21:15:11,835 | INFO     | job summary report
[2025-11-26 16:15:45] 2025-11-26 21:15:11,835 | INFO     | --------------------------------------------------
[2025-11-26 16:15:45] 2025-11-26 21:15:11,835 | INFO     | PanDA job id: 6896577792
[2025-11-26 16:15:45] 2025-11-26 21:15:11,836 | INFO     | task id: 47556161
[2025-11-26 16:15:45] 2025-11-26 21:15:11,836 | INFO     | errors: (none)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,836 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:15:45] 2025-11-26 21:15:11,836 | INFO     | pilot state: finished 
[2025-11-26 16:15:45] 2025-11-26 21:15:11,836 | INFO     | transexitcode: 0
[2025-11-26 16:15:45] 2025-11-26 21:15:11,836 | INFO     | exeerrorcode: 0
[2025-11-26 16:15:45] 2025-11-26 21:15:11,837 | INFO     | exeerrordiag: 
[2025-11-26 16:15:45] 2025-11-26 21:15:11,837 | INFO     | exitcode: 0
[2025-11-26 16:15:45] 2025-11-26 21:15:11,837 | INFO     | exitmsg: OK
[2025-11-26 16:15:45] 2025-11-26 21:15:11,837 | INFO     | cpuconsumptiontime: 548122 s
[2025-11-26 16:15:45] 2025-11-26 21:15:11,837 | INFO     | nevents: 1000
[2025-11-26 16:15:45] 2025-11-26 21:15:11,837 | INFO     | neventsw: 0
[2025-11-26 16:15:45] 2025-11-26 21:15:11,838 | INFO     | pid: 22749
[2025-11-26 16:15:45] 2025-11-26 21:15:11,838 | INFO     | pgrp: 22749
[2025-11-26 16:15:45] 2025-11-26 21:15:11,838 | INFO     | corecount: 8
[2025-11-26 16:15:45] 2025-11-26 21:15:11,838 | INFO     | event service: False
[2025-11-26 16:15:45] 2025-11-26 21:15:11,838 | INFO     | sizes: {0: 2284262, 1: 2284262, 4: 2284552, 12: 2284580, 71108: 2341488, 71114: 2350666, 71120: 2350856}
[2025-11-26 16:15:45] 2025-11-26 21:15:11,838 | INFO     | --------------------------------------------------
[2025-11-26 16:15:45] 2025-11-26 21:15:11,839 | INFO     | 
[2025-11-26 16:15:45] 2025-11-26 21:15:11,839 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 16:15:45] 2025-11-26 21:15:11,859 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,859 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,859 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,859 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,859 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,861 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,861 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,861 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,861 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,862 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,862 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,862 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,862 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:15:45] 2025-11-26 21:15:11,862 | INFO     | job 6896577792 has completed (purged errors)
[2025-11-26 16:15:45] 2025-11-26 21:15:11,863 | INFO     | overall cleanup function is called
[2025-11-26 16:15:45] 2025-11-26 21:15:12,880 | INFO     | --- collectZombieJob: --- 10, [22749]
[2025-11-26 16:15:45] 2025-11-26 21:15:12,880 | INFO     | zombie collector waiting for pid 22749
[2025-11-26 16:15:45] 2025-11-26 21:15:12,880 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:15:45] 2025-11-26 21:15:12,880 | INFO     | collected zombie processes
[2025-11-26 16:15:45] 2025-11-26 21:15:12,880 | INFO     | will attempt to kill all subprocesses of pid=22749
[2025-11-26 16:15:45] 2025-11-26 21:15:13,054 | INFO     | process IDs to be killed: [22749] (in reverse order)
[2025-11-26 16:15:45] 2025-11-26 21:15:13,112 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:15:45] 2025-11-26 21:15:13,112 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:15:45] 2025-11-26 21:15:13,117 | INFO     | did not find any defunct processes belonging to 22749
[2025-11-26 16:15:45] 2025-11-26 21:15:13,122 | INFO     | did not find any defunct processes belonging to 22749
[2025-11-26 16:15:45] 2025-11-26 21:15:13,124 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:15:45] 2025-11-26 21:15:13,125 | INFO     | ready for new job
[2025-11-26 16:15:45] 2025-11-26 21:15:13,125 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:15:45] 2025-11-26 21:15:13,130 | INFO     | ***************************************
[2025-11-26 16:15:45] 2025-11-26 21:15:13,130 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:15:45] 2025-11-26 21:15:13,130 | INFO     | ***************************************
[2025-11-26 16:15:45] 2025-11-26 21:15:13,131 | INFO     | 
[2025-11-26 16:15:45] 2025-11-26 21:15:13,132 | INFO     | architecture information:
[2025-11-26 16:15:45] 2025-11-26 21:15:13,132 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:15:45] 2025-11-26 21:15:13,148 | INFO     | cat /etc/os-release:
[2025-11-26 16:15:45] NAME="CentOS Linux"
[2025-11-26 16:15:45] VERSION="7 (Core)"
[2025-11-26 16:15:45] ID="centos"
[2025-11-26 16:15:45] ID_LIKE="rhel fedora"
[2025-11-26 16:15:45] VERSION_ID="7"
[2025-11-26 16:15:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:15:45] ANSI_COLOR="0;31"
[2025-11-26 16:15:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:15:45] HOME_URL="https://www.centos.org/"
[2025-11-26 16:15:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:15:45] 
[2025-11-26 16:15:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:15:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:15:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:15:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:15:45] 
[2025-11-26 16:15:45] 2025-11-26 21:15:13,148 | INFO     | ***************************************
[2025-11-26 16:15:45] 2025-11-26 21:15:13,651 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 16:15:45] 2025-11-26 21:15:13,664 | INFO     | sufficient remaining disk space (24601690112 B)
[2025-11-26 16:15:45] 2025-11-26 21:15:13,664 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:15:45] 2025-11-26 21:15:13,665 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:15:45] 2025-11-26 21:15:13,665 | INFO     | update_server=False
[2025-11-26 16:15:45] 2025-11-26 21:15:13,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:15:45] 2025-11-26 21:15:13,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:15:45] 2025-11-26 21:15:13,849 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:15:45] 2025-11-26 21:15:14,053 | INFO     | all payload control threads have been joined
[2025-11-26 16:15:45] 2025-11-26 21:15:14,138 | INFO     | all job control threads have been joined
[2025-11-26 16:15:45] 2025-11-26 21:15:14,169 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:15:45] 2025-11-26 21:15:14,169 | INFO     | aborting loop
[2025-11-26 16:15:45] 2025-11-26 21:15:14,556 | INFO     | all data control threads have been joined
[2025-11-26 16:15:45] 2025-11-26 21:15:14,668 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:14,670 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:14,672 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:15,059 | INFO     | [payload] control thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:15,144 | INFO     | [job] control thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:15,174 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:15,558 | INFO     | [data] control thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:15,625 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:15,700 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:15,854 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:16,004 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:16,009 | INFO     | [job] validate thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:16,085 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:16,121 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:16,224 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:16,421 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:15:45] 2025-11-26 21:15:20,430 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:15:45] 2025-11-26 21:15:32,626 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:15:45] 2025-11-26 21:15:33,788 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663526414144)>', '<ExcThread(monitor, started 140663215593216)>']
[2025-11-26 16:15:45] 2025-11-26 21:15:38,813 | INFO     | all workflow threads have been joined
[2025-11-26 16:15:45] 2025-11-26 21:15:38,813 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:15:45] 2025-11-26 21:15:38,813 | INFO     | traces error code: 0
[2025-11-26 16:15:45] 2025-11-26 21:15:38,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:15:45] 2025-11-26 21:15:44,781 | INFO     | PID=14303 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 16:15:45] 2025-11-26 21:15:44,781 | INFO     | .. there are 3 such processes running
[2025-11-26 16:15:45] 2025-11-26 21:15:44,782 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:15:45] 2025-11-26 21:15:44,782 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:15:45] 2025-11-26 21:15:44,782 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:15:45] 2025-11-26 21:15:44,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:15:45] 2025-11-26 21:15:44,782 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 16:15:45] 2025-11-26 21:15:44,782 | INFO     | [monitor] control thread has ended
[2025-11-26 16:15:45] 2025-11-26 21:15:44,874 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:15:45] 2025-11-26 21:15:44,876 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:15:45] 2025-11-26 21:15:44,878 [wrapper] pilotpid: 14303
[2025-11-26 16:15:45] 2025-11-26 21:15:44,880 [wrapper] Pilot exit status: 0
[2025-11-26 16:15:45] 2025-11-26 21:15:44,888 [wrapper] pandaids: 6896577792
[2025-11-26 16:15:45] 2025-11-26 21:15:44,918 [wrapper] cleanup supervisor_pilot 11307 14304
[2025-11-26 16:15:45] 2025-11-26 21:15:44,920 [wrapper] Test setup, not cleaning
[2025-11-26 16:15:45] 2025-11-26 21:15:44,922 [wrapper] apfmon messages muted
[2025-11-26 16:15:45] 2025-11-26 21:15:44,924 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:15:45] 2025-11-26 21:15:44,926 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:15:45]  *** Error codes and diagnostics ***
[2025-11-26 16:15:45]     "exeErrorCode": 0,
[2025-11-26 16:15:45]     "exeErrorDiag": "",
[2025-11-26 16:15:45]     "pilotErrorCode": 0,
[2025-11-26 16:15:45]     "pilotErrorDiag": "",
[2025-11-26 16:15:45]  *** Listing of results directory ***
[2025-11-26 16:15:45] total 1335796
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 00:23 queuedata.json
[2025-11-26 16:15:45] -rwx------ 1 boincer umatlas     36292 Nov 25 00:24 runpilot2-wrapper.sh
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas       100 Nov 25 20:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:15:45] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 20:29 run_atlas
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas       105 Nov 25 20:29 job.xml
[2025-11-26 16:15:45] -rw-r--r-- 2 boincer umatlas 410769694 Nov 25 20:29 EVNT.47483658._002099.pool.root.1
[2025-11-26 16:15:45] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 20:29 start_atlas.sh
[2025-11-26 16:15:45] drwxrwx--x 2 boincer umatlas      4096 Nov 25 20:29 shared
[2025-11-26 16:15:45] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 20:29 input.tar.gz
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas         0 Nov 25 20:29 boinc_lockfile
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas      2784 Nov 25 20:29 pandaJob.out
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas        57 Nov 25 20:29 setup.sh.local
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas    991877 Nov 25 20:29 agis_schedconf.cvmfs.json
[2025-11-26 16:15:45] drwx------ 5 boincer umatlas      4096 Nov 25 20:29 pilot3
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas       533 Nov 26 16:02 boinc_task_state.xml
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas      5952 Nov 26 16:11 init_data.xml
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas 928848041 Nov 26 16:14 HITS.47556161._000822.pool.root.1
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas      1068 Nov 26 16:14 memory_monitor_summary.json
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas   1516240 Nov 26 16:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas   2327641 Nov 26 16:15 log.47556161._000822.job.log.tgz.1
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas        95 Nov 26 16:15 pilot_heartbeat.json
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas      8662 Nov 26 16:15 heartbeat.json
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 16:15 boinc_mmap_file
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas        29 Nov 26 16:15 wrapper_checkpoint.txt
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas       890 Nov 26 16:15 pilotlog.txt
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas   9830539 Nov 26 16:15 log.47556161._000822.job.log.1
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas       353 Nov 26 16:15 output.list
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas       620 Nov 26 16:15 runtime_log
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas  12175360 Nov 26 16:15 result.tar.gz
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas      9338 Nov 26 16:15 runtime_log.err
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas       667 Nov 26 16:15 qmALDmki0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEAMKDm8GqbHm.diag
[2025-11-26 16:15:45] -rw-r--r-- 1 boincer umatlas     21263 Nov 26 16:15 stderr.txt
[2025-11-26 16:15:45] HITS file was successfully produced:
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas 928848041 Nov 26 16:14 shared/HITS.pool.root.1
[2025-11-26 16:15:45]  *** Contents of shared directory: ***
[2025-11-26 16:15:45] total 1320720
[2025-11-26 16:15:45] -rw-r--r-- 2 boincer umatlas 410769694 Nov 25 20:29 ATLAS.root_0
[2025-11-26 16:15:45] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 20:29 start_atlas.sh
[2025-11-26 16:15:45] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 20:29 input.tar.gz
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas 928848041 Nov 26 16:14 HITS.pool.root.1
[2025-11-26 16:15:45] -rw------- 1 boincer umatlas  12175360 Nov 26 16:15 result.tar.gz
16:15:46 (10480): run_atlas exited; CPU time 546773.592905
16:15:46 (10480): called boinc_finish(0)

</stderr_txt>
]]>

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