Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:03 (3150151): wrapper (7.7.26015): starting
00:01:03 (3150151): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:03] Arguments: --nthreads 9
[2025-11-26 00:01:03] Threads: 9
[2025-11-26 00:01:03] Checking for CVMFS
[2025-11-26 00:01:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:05] 2.13.2.0 10847 35391 279460 153309 1 533 28273656 40960000 12022 16776704 0 37179259 99.674 30612857 41770 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:01:05] CVMFS is ok
[2025-11-26 00:01:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:05] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:05] Checking for apptainer binary...
[2025-11-26 00:01:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:05] Running /usr/bin/apptainer --version
[2025-11-26 00:01:05] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:06] c-210-35-4.aglt2.org
[2025-11-26 00:01:06] apptainer works
[2025-11-26 00:01:06] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:06] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:06] Starting ATLAS job with PandaID=6896713653
[2025-11-26 00:01:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:06:54]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:06:54] 2025-11-28 04:05:32,093 | INFO     | time since job start (169397s) is within the limit (172800.0s)
[2025-11-27 23:06:54] 2025-11-28 04:05:32,622 | INFO     | monitor loop #9386: job 0:6896713653 is in state 'finished'
[2025-11-27 23:06:54] 2025-11-28 04:05:32,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:06:54] 2025-11-28 04:05:34,100 | INFO     | time since job start (169399s) is within the limit (172800.0s)
[2025-11-27 23:06:54] 2025-11-28 04:05:35,161 | INFO     | monitor loop #9387: job 0:6896713653 is in state 'finished'
[2025-11-27 23:06:54] 2025-11-28 04:05:35,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:06:54] 2025-11-28 04:05:36,106 | INFO     | time since job start (169401s) is within the limit (172800.0s)
[2025-11-27 23:06:54] 2025-11-28 04:05:37,671 | INFO     | monitor loop #9388: job 0:6896713653 is in state 'finished'
[2025-11-27 23:06:54] 2025-11-28 04:05:37,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:06:54] 2025-11-28 04:05:38,113 | INFO     | time since job start (169403s) is within the limit (172800.0s)
[2025-11-27 23:06:54] 2025-11-28 04:05:40,120 | INFO     | time since job start (169405s) is within the limit (172800.0s)
[2025-11-27 23:06:54] 2025-11-28 04:05:40,244 | INFO     | monitor loop #9389: job 0:6896713653 is in state 'finished'
[2025-11-27 23:06:54] 2025-11-28 04:05:40,245 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:06:54] 2025-11-28 04:05:42,098 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 23:06:54] 2025-11-28 04:05:42,118 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2703.5355535714293
[2025-11-27 23:06:54] 2025-11-28 04:05:42,148 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896713653/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:06:54] 2025-11-28 04:05:42,149 | INFO     | extracted standard info from prmon json
[2025-11-27 23:06:54] 2025-11-28 04:05:42,149 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:06:54] 2025-11-28 04:05:42,149 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:06:54] 2025-11-28 04:05:42,214 | INFO     | time since job start (169407s) is within the limit (172800.0s)
[2025-11-27 23:06:54] 2025-11-28 04:05:42,321 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:06:54] 2025-11-28 04:05:42,326 | INFO     | sum of square deviations: 6626672086328.816
[2025-11-27 23:06:54] 2025-11-28 04:05:42,693 | INFO     | sum of deviations: 17085440654210.738
[2025-11-27 23:06:54] 2025-11-28 04:05:42,693 | INFO     | mean x: 1764218093.3592794
[2025-11-27 23:06:54] 2025-11-28 04:05:42,693 | INFO     | mean y: 3078668.1466666665
[2025-11-27 23:06:54] 2025-11-28 04:05:42,694 | INFO     | intersect: -4545576092.869844
[2025-11-27 23:06:54] 2025-11-28 04:05:42,697 | INFO     | chi2: 27.076060850111546
[2025-11-27 23:06:54] 2025-11-28 04:05:42,701 | INFO     | sum of square deviations: 6590926974202.523
[2025-11-27 23:06:54] 2025-11-28 04:05:42,806 | INFO     | monitor loop #9390: job 0:6896713653 is in state 'finished'
[2025-11-27 23:06:54] 2025-11-28 04:05:42,807 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:06:54] 2025-11-28 04:05:43,050 | INFO     | sum of deviations: 18183018159437.184
[2025-11-27 23:06:54] 2025-11-28 04:05:43,051 | INFO     | mean x: 1764217940.8761733
[2025-11-27 23:06:54] 2025-11-28 04:05:43,051 | INFO     | mean y: 3083349.735379061
[2025-11-27 23:06:54] 2025-11-28 04:05:43,051 | INFO     | intersect: -4864032760.292186
[2025-11-27 23:06:54] 2025-11-28 04:05:43,076 | INFO     | chi2: 23.204715589191665
[2025-11-27 23:06:54] 2025-11-28 04:05:43,077 | INFO     | current chi2=23.204715589191665 (change=14.298037230566841 %)
[2025-11-27 23:06:54] 2025-11-28 04:05:43,077 | INFO     | right removable region: 2769
[2025-11-27 23:06:54] 2025-11-28 04:05:43,093 | INFO     | sum of square deviations: 6590911300453.286
[2025-11-27 23:06:54] 2025-11-28 04:05:43,461 | INFO     | sum of deviations: 15895824427909.273
[2025-11-27 23:06:54] 2025-11-28 04:05:43,461 | INFO     | mean x: 1764218245.8758123
[2025-11-27 23:06:54] 2025-11-28 04:05:43,461 | INFO     | mean y: 3083741.3176895306
[2025-11-27 23:06:54] 2025-11-28 04:05:43,461 | INFO     | intersect: -4251821568.5181894
[2025-11-27 23:06:54] 2025-11-28 04:05:43,469 | INFO     | chi2: 22.977740944676047
[2025-11-27 23:06:54] 2025-11-28 04:05:43,469 | INFO     | current chi2=22.977740944676047 (change=15.13632255490597 %)
[2025-11-27 23:06:54] 2025-11-28 04:05:43,469 | INFO     | left removable region: 10
[2025-11-27 23:06:54] 2025-11-28 04:05:43,477 | INFO     | sum of square deviations: 6512709398820.971
[2025-11-27 23:06:54] 2025-11-28 04:05:43,880 | INFO     | sum of deviations: 16184040070119.744
[2025-11-27 23:06:54] 2025-11-28 04:05:43,880 | INFO     | mean x: 1764218215.4131932
[2025-11-27 23:06:54] 2025-11-28 04:05:43,881 | INFO     | mean y: 3093506.913374411
[2025-11-27 23:06:54] 2025-11-28 04:05:43,881 | INFO     | intersect: -4380977168.165606
[2025-11-27 23:06:54] 2025-11-28 04:05:43,889 | INFO     | chi2: 15.732609153652367
[2025-11-27 23:06:54] 2025-11-28 04:05:43,890 | INFO     | current memory leak: 2.48 B/s (using 2759 data points, chi2=15.73)
[2025-11-27 23:06:54] 2025-11-28 04:05:43,895 | INFO     | could have reported an average CPU frequency of 2768 MHz (95 samples)
[2025-11-27 23:06:54] 2025-11-28 04:05:43,895 | INFO     | ..............................
[2025-11-27 23:06:54] 2025-11-28 04:05:43,895 | INFO     | . Timing measurements:
[2025-11-27 23:06:54] 2025-11-28 04:05:43,895 | INFO     | . get job = 0 s
[2025-11-27 23:06:54] 2025-11-28 04:05:43,896 | INFO     | . initial setup = 6 s
[2025-11-27 23:06:54] 2025-11-28 04:05:43,896 | INFO     | . payload setup = 43 s
[2025-11-27 23:06:54] 2025-11-28 04:05:43,896 | INFO     | . stage-in = 0 s
[2025-11-27 23:06:54] 2025-11-28 04:05:43,896 | INFO     | . payload execution = 169255 s
[2025-11-27 23:06:54] 2025-11-28 04:05:43,896 | INFO     | . stage-out = 10 s
[2025-11-27 23:06:54] 2025-11-28 04:05:43,896 | INFO     | . log creation = 2 s
[2025-11-27 23:06:54] 2025-11-28 04:05:43,896 | INFO     | ..............................
[2025-11-27 23:06:54] 2025-11-28 04:05:44,145 | INFO     | 
[2025-11-27 23:06:54] 2025-11-28 04:05:44,155 | INFO     | job summary report
[2025-11-27 23:06:54] 2025-11-28 04:05:44,155 | INFO     | --------------------------------------------------
[2025-11-27 23:06:54] 2025-11-28 04:05:44,155 | INFO     | PanDA job id: 6896713653
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | task id: 47556161
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | errors: (none)
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | pilot state: finished 
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | transexitcode: 0
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | exeerrorcode: 0
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | exeerrordiag: 
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | exitcode: 0
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | exitmsg: OK
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | cpuconsumptiontime: 246165 s
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | nevents: 1000
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | neventsw: 0
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | pid: 3181244
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | pgrp: 3181244
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | corecount: 9
[2025-11-27 23:06:54] 2025-11-28 04:05:44,156 | INFO     | event service: False
[2025-11-27 23:06:54] 2025-11-28 04:05:44,157 | INFO     | sizes: {0: 2283434, 1: 2284035, 2: 2284318, 13: 2284318, 25: 2284374, 35: 2284820, 169303: 2387218, 169315: 2396212, 169318: 2396268, 169343: 2396514}
[2025-11-27 23:06:54] 2025-11-28 04:05:44,157 | INFO     | --------------------------------------------------
[2025-11-27 23:06:54] 2025-11-28 04:05:44,157 | INFO     | 
[2025-11-27 23:06:54] 2025-11-28 04:05:44,157 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 23:06:54] 2025-11-28 04:05:44,276 | INFO     | time since job start (169409s) is within the limit (172800.0s)
[2025-11-27 23:06:54] 2025-11-28 04:05:44,286 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,286 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,286 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,287 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,288 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,288 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:06:54] 2025-11-28 04:05:44,288 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,288 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:06:54] 2025-11-28 04:05:44,288 | INFO     | job 6896713653 has completed (purged errors)
[2025-11-27 23:06:54] 2025-11-28 04:05:44,288 | INFO     | overall cleanup function is called
[2025-11-27 23:06:54] 2025-11-28 04:05:45,333 | INFO     | --- collectZombieJob: --- 10, [3181244]
[2025-11-27 23:06:54] 2025-11-28 04:05:45,333 | INFO     | zombie collector waiting for pid 3181244
[2025-11-27 23:06:54] 2025-11-28 04:05:45,334 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:06:54] 2025-11-28 04:05:45,334 | INFO     | collected zombie processes
[2025-11-27 23:06:54] 2025-11-28 04:05:45,334 | INFO     | will attempt to kill all subprocesses of pid=3181244
[2025-11-27 23:06:54] 2025-11-28 04:05:45,723 | INFO     | process IDs to be killed: [3181244] (in reverse order)
[2025-11-27 23:06:54] 2025-11-28 04:05:45,881 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:06:54] 2025-11-28 04:05:45,882 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:06:54] 2025-11-28 04:05:45,894 | INFO     | did not find any defunct processes belonging to 3181244
[2025-11-27 23:06:54] 2025-11-28 04:05:45,907 | INFO     | did not find any defunct processes belonging to 3181244
[2025-11-27 23:06:54] 2025-11-28 04:05:45,909 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:06:54] 2025-11-28 04:05:45,910 | INFO     | ready for new job
[2025-11-27 23:06:54] 2025-11-28 04:05:45,910 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:06:54] 2025-11-28 04:05:45,924 | INFO     | ***************************************
[2025-11-27 23:06:54] 2025-11-28 04:05:45,925 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:06:54] 2025-11-28 04:05:45,925 | INFO     | ***************************************
[2025-11-27 23:06:54] 2025-11-28 04:05:45,925 | INFO     | 
[2025-11-27 23:06:54] 2025-11-28 04:05:45,929 | INFO     | architecture information:
[2025-11-27 23:06:54] 2025-11-28 04:05:45,930 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:06:54] 2025-11-28 04:05:45,954 | INFO     | cat /etc/os-release:
[2025-11-27 23:06:54] NAME="CentOS Linux"
[2025-11-27 23:06:54] VERSION="7 (Core)"
[2025-11-27 23:06:54] ID="centos"
[2025-11-27 23:06:54] ID_LIKE="rhel fedora"
[2025-11-27 23:06:54] VERSION_ID="7"
[2025-11-27 23:06:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:06:54] ANSI_COLOR="0;31"
[2025-11-27 23:06:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:06:54] HOME_URL="https://www.centos.org/"
[2025-11-27 23:06:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:06:54] 
[2025-11-27 23:06:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:06:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:06:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:06:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:06:54] 
[2025-11-27 23:06:54] 2025-11-28 04:05:45,955 | INFO     | ***************************************
[2025-11-27 23:06:54] 2025-11-28 04:05:46,459 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 23:06:54] 2025-11-28 04:05:46,526 | INFO     | sufficient remaining disk space (67907878912 B)
[2025-11-27 23:06:54] 2025-11-28 04:05:46,526 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:06:54] 2025-11-28 04:05:46,526 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:06:54] 2025-11-28 04:05:46,527 | INFO     | update_server=False
[2025-11-27 23:06:54] 2025-11-28 04:05:46,527 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:06:54] 2025-11-28 04:05:46,527 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:06:54] 2025-11-28 04:05:46,527 | INFO     | aborting loop
[2025-11-27 23:06:54] 2025-11-28 04:05:46,527 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:06:54] 2025-11-28 04:05:46,912 | INFO     | all job control threads have been joined
[2025-11-27 23:06:54] 2025-11-28 04:05:47,255 | INFO     | all data control threads have been joined
[2025-11-27 23:06:54] 2025-11-28 04:05:47,533 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:47,537 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:47,910 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:06:54] 2025-11-28 04:05:47,919 | INFO     | [job] control thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:48,020 | INFO     | all payload control threads have been joined
[2025-11-27 23:06:54] 2025-11-28 04:05:48,227 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:48,262 | INFO     | [data] control thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:48,278 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:48,294 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:48,352 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:48,509 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:48,535 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:48,655 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:48,800 | INFO     | [job] validate thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:48,804 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:49,026 | INFO     | [payload] control thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:49,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:06:54] 2025-11-28 04:05:50,165 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:05:51,979 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:06:54] 2025-11-28 04:06:21,978 | INFO     | PID=3157430 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:06:54] 2025-11-28 04:06:21,978 | INFO     | .. there are 11 such processes running
[2025-11-27 23:06:54] 2025-11-28 04:06:21,979 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:06:54] 2025-11-28 04:06:21,979 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:06:54] 2025-11-28 04:06:21,979 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:06:54] 2025-11-28 04:06:45,570 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:06:54] 2025-11-28 04:06:46,902 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139888271890240)>', '<ExcThread(monitor, started 139887529412352)>']
[2025-11-27 23:06:54] 2025-11-28 04:06:47,375 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:06:54] 2025-11-28 04:06:47,375 | INFO     | [monitor] control thread has ended
[2025-11-27 23:06:54] 2025-11-28 04:06:51,928 | INFO     | all workflow threads have been joined
[2025-11-27 23:06:54] 2025-11-28 04:06:51,932 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:06:54] 2025-11-28 04:06:51,933 | INFO     | traces error code: 0
[2025-11-27 23:06:54] 2025-11-28 04:06:51,933 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:06:54] 2025-11-28 04:06:53,114 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:06:54] 2025-11-28 04:06:53,185 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:06:54] 2025-11-28 04:06:53,215 [wrapper] pilotpid: 3157430
[2025-11-27 23:06:54] 2025-11-28 04:06:53,244 [wrapper] Pilot exit status: 0
[2025-11-27 23:06:54] 2025-11-28 04:06:53,367 [wrapper] pandaids: 6896713653
[2025-11-27 23:06:54] 2025-11-28 04:06:53,845 [wrapper] cleanup supervisor_pilot 3518688 3157431
[2025-11-27 23:06:54] 2025-11-28 04:06:53,861 [wrapper] Test setup, not cleaning
[2025-11-27 23:06:54] 2025-11-28 04:06:53,898 [wrapper] apfmon messages muted
[2025-11-27 23:06:54] 2025-11-28 04:06:53,923 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:06:54] 2025-11-28 04:06:53,961 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:06:54]  *** Error codes and diagnostics ***
[2025-11-27 23:06:54]     "exeErrorCode": 0,
[2025-11-27 23:06:54]     "exeErrorDiag": "",
[2025-11-27 23:06:54]     "pilotErrorCode": 0,
[2025-11-27 23:06:54]     "pilotErrorDiag": "",
[2025-11-27 23:06:54]  *** Listing of results directory ***
[2025-11-27 23:06:54] total 1342040
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:25 queuedata.json
[2025-11-27 23:06:54] -rwx------. 1 boincer umatlas     36292 Nov 25 00:26 runpilot2-wrapper.sh
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:06:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-27 23:06:54] -rw-r--r--. 2 boincer umatlas 408621799 Nov 26 00:01 EVNT.47483658._002104.pool.root.1
[2025-11-27 23:06:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 23:06:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-27 23:06:54] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:01 input.tar.gz
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:01 pandaJob.out
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-27 23:06:54] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:21 boinc_task_state.xml
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas 913886713 Nov 27 23:02 HITS.47556161._000879.pool.root.1
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 23:03 init_data.xml
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas      1060 Nov 27 23:05 memory_monitor_summary.json
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:05 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas   3473635 Nov 27 23:05 log.47556161._000879.job.log.tgz.1
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas      8626 Nov 27 23:05 heartbeat.json
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas        95 Nov 27 23:06 pilot_heartbeat.json
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas      4824 Nov 27 23:06 pilotlog.txt
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas        29 Nov 27 23:06 wrapper_checkpoint.txt
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 23:06 boinc_mmap_file
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas  20434536 Nov 27 23:06 log.47556161._000879.job.log.1
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas       353 Nov 27 23:06 output.list
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas       620 Nov 27 23:06 runtime_log
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas  23930880 Nov 27 23:06 result.tar.gz
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas      9354 Nov 27 23:06 runtime_log.err
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas       665 Nov 27 23:06 8JENDmek0h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDMJKDmVJfK0n.diag
[2025-11-27 23:06:54] -rw-r--r--. 1 boincer umatlas     21820 Nov 27 23:06 stderr.txt
[2025-11-27 23:06:54] HITS file was successfully produced:
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas 913886713 Nov 27 23:02 shared/HITS.pool.root.1
[2025-11-27 23:06:54]  *** Contents of shared directory: ***
[2025-11-27 23:06:54] total 1315488
[2025-11-27 23:06:54] -rw-r--r--. 2 boincer umatlas 408621799 Nov 26 00:01 ATLAS.root_0
[2025-11-27 23:06:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 23:06:54] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:01 input.tar.gz
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas 913886713 Nov 27 23:02 HITS.pool.root.1
[2025-11-27 23:06:54] -rw-------. 1 boincer umatlas  23930880 Nov 27 23:06 result.tar.gz
23:06:56 (3150151): run_atlas exited; CPU time 249022.545196
23:06:56 (3150151): called boinc_finish(0)

</stderr_txt>
]]>

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