Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:48:23 (3882724): wrapper (7.7.26015): starting
16:48:23 (3882724): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 16:48:23] Arguments: --nthreads 12
[2025-11-25 16:48:23] Threads: 12
[2025-11-25 16:48:23] Checking for CVMFS
[2025-11-25 16:48:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:48:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:48:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:48:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:48:24] 2.11.5.0 433116 27638 214552 153303 3 311 39485807 45568000 22712 130560 0 297116544 99.790 180488919 16659 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 16:48:24] CVMFS is ok
[2025-11-25 16:48:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:48:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:48:24] Further information can be found at the LHC@home message board.
[2025-11-25 16:48:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:48:24] Checking for apptainer binary...
[2025-11-25 16:48:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:48:24] Running /usr/bin/apptainer --version
[2025-11-25 16:48:24] apptainer version 1.4.1-1.el9
[2025-11-25 16:48:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:48:24] wns0062.triumf.lcg
[2025-11-25 16:48:24] apptainer works
[2025-11-25 16:48:24] Set ATHENA_PROC_NUMBER=12
[2025-11-25 16:48:24] Set ATHENA_CORE_NUMBER=12
[2025-11-25 16:48:24] Starting ATLAS job with PandaID=6891570637
[2025-11-25 16:48:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 16:53:46]  *** The last 200 lines of the pilot log: ***
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | could have reported an average CPU frequency of 2763 MHz (4 samples)
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | ..............................
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . Timing measurements:
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . get job = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . initial setup = 3 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . payload setup = 11 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . stage-in = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . payload execution = 92 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . stage-out = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . log creation = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | ..............................
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891570637/pilotlog.txt
[2025-11-25 16:53:46] 2025-11-26 00:52:46,743 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 16:53:46] - Log from pilotlog.txt -
[2025-11-25 16:53:46] 2025-11-26 00:52:46,729 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891570637/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 16:53:46] 2025-11-26 00:52:46,730 | INFO     | extracted standard info from prmon json
[2025-11-25 16:53:46] 2025-11-26 00:52:46,730 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 16:53:46] 2025-11-26 00:52:46,730 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 16:53:46] 2025-11-26 00:52:46,730 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 16:53:46] 2025-11-26 00:52:46,730 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | WARNING  | wrong length of table data, x=[1764118158.0, 1764118219.0], y=[1673.0, 372311.0] (must be same and length>=4)
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | could have reported an average CPU frequency of 2763 MHz (4 samples)
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | ..............................
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . Timing measurements:
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . get job = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . initial setup = 3 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . payload setup = 11 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . stage-in = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . payload execution = 92 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . stage-out = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . log creation = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | ..............................
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891570637/pilotlog.txt
[2025-11-25 16:53:46] 2025-11-26 00:52:46,744 | WARNING  | 
[2025-11-25 16:53:46] [begin log extracts]
[2025-11-25 16:53:46] - Log from pilotlog.txt -
[2025-11-25 16:53:46] 2025-11-26 00:52:46,729 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891570637/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 16:53:46] 2025-11-26 00:52:46,730 | INFO     | extracted standard info from prmon json
[2025-11-25 16:53:46] 2025-11-26 00:52:46,730 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 16:53:46] 2025-11-26 00:52:46,730 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 16:53:46] 2025-11-26 00:52:46,730 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 16:53:46] 2025-11-26 00:52:46,730 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | WARNING  | wrong length of table data, x=[1764118158.0, 1764118219.0], y=[1673.0, 372311.0] (must be same and length>=4)
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | could have reported an average CPU frequency of 2763 MHz (4 samples)
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | ..............................
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . Timing measurements:
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . get job = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . initial setup = 3 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,731 | INFO     | . payload setup = 11 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . stage-in = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . payload execution = 92 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . stage-out = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | . log creation = 0 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | ..............................
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 16:53:46] 2025-11-26 00:52:46,732 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891570637/pilotlog.txt
[2025-11-25 16:53:46] [end log extracts]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,744 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 16:53:46] 2025-11-26 00:52:46,744 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | 
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | job summary report
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | --------------------------------------------------
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | PanDA job id: 6891570637
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | task id: 47493068
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 16:50:37,954 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | pilot state: failed 
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | transexitcode: 65
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | exeerrorcode: 65
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | exitcode: 65
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | cpuconsumptiontime: 40 s
[2025-11-25 16:53:46] 2025-11-26 00:52:46,797 | INFO     | nevents: 0
[2025-11-25 16:53:46] 2025-11-26 00:52:46,798 | INFO     | neventsw: 0
[2025-11-25 16:53:46] 2025-11-26 00:52:46,798 | INFO     | pid: 3893742
[2025-11-25 16:53:46] 2025-11-26 00:52:46,798 | INFO     | pgrp: 3893742
[2025-11-25 16:53:46] 2025-11-26 00:52:46,798 | INFO     | corecount: 12
[2025-11-25 16:53:46] 2025-11-26 00:52:46,798 | INFO     | event service: False
[2025-11-25 16:53:46] 2025-11-26 00:52:46,798 | INFO     | sizes: {0: 2284301, 7: 2284563, 11: 2284591, 108: 2310121, 109: 2314411, 110: 2314467, 229: 2314761}
[2025-11-25 16:53:46] 2025-11-26 00:52:46,798 | INFO     | --------------------------------------------------
[2025-11-25 16:53:46] 2025-11-26 00:52:46,798 | INFO     | 
[2025-11-25 16:53:46] 2025-11-26 00:52:46,798 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 16:53:46] 2025-11-26 00:52:46,812 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,812 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,812 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,813 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 16:53:46] 2025-11-26 00:52:46,814 | INFO     | job 6891570637 has completed (purged errors)
[2025-11-25 16:53:46] 2025-11-26 00:52:46,814 | INFO     | overall cleanup function is called
[2025-11-25 16:53:46] 2025-11-26 00:52:47,822 | INFO     | --- collectZombieJob: --- 10, [3893742]
[2025-11-25 16:53:46] 2025-11-26 00:52:47,822 | INFO     | zombie collector waiting for pid 3893742
[2025-11-25 16:53:46] 2025-11-26 00:52:47,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 16:53:46] 2025-11-26 00:52:47,822 | INFO     | collected zombie processes
[2025-11-25 16:53:46] 2025-11-26 00:52:47,822 | INFO     | will attempt to kill all subprocesses of pid=3893742
[2025-11-25 16:53:46] 2025-11-26 00:52:47,993 | INFO     | process IDs to be killed: [3893742] (in reverse order)
[2025-11-25 16:53:46] 2025-11-26 00:52:48,061 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 16:53:46] 2025-11-26 00:52:48,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 16:53:46] 2025-11-26 00:52:48,069 | INFO     | did not find any defunct processes belonging to 3893742
[2025-11-25 16:53:46] 2025-11-26 00:52:48,076 | INFO     | did not find any defunct processes belonging to 3893742
[2025-11-25 16:53:46] 2025-11-26 00:52:48,076 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 16:53:46] 2025-11-26 00:52:48,077 | INFO     | ready for new job
[2025-11-25 16:53:46] 2025-11-26 00:52:48,077 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 16:53:46] 2025-11-26 00:52:48,078 | INFO     | ***************************************
[2025-11-25 16:53:46] 2025-11-26 00:52:48,078 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 16:53:46] 2025-11-26 00:52:48,078 | INFO     | ***************************************
[2025-11-25 16:53:46] 2025-11-26 00:52:48,078 | INFO     | 
[2025-11-25 16:53:46] 2025-11-26 00:52:48,080 | INFO     | architecture information:
[2025-11-25 16:53:46] 2025-11-26 00:52:48,080 | INFO     | executing command: cat /etc/os-release
[2025-11-25 16:53:46] 2025-11-26 00:52:48,092 | INFO     | cat /etc/os-release:
[2025-11-25 16:53:46] NAME="CentOS Linux"
[2025-11-25 16:53:46] VERSION="7 (Core)"
[2025-11-25 16:53:46] ID="centos"
[2025-11-25 16:53:46] ID_LIKE="rhel fedora"
[2025-11-25 16:53:46] VERSION_ID="7"
[2025-11-25 16:53:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 16:53:46] ANSI_COLOR="0;31"
[2025-11-25 16:53:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 16:53:46] HOME_URL="https://www.centos.org/"
[2025-11-25 16:53:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 16:53:46] 
[2025-11-25 16:53:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 16:53:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 16:53:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 16:53:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 16:53:46] 
[2025-11-25 16:53:46] 2025-11-26 00:52:48,092 | INFO     | ***************************************
[2025-11-25 16:53:46] 2025-11-26 00:52:48,594 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 16:53:46] 2025-11-26 00:52:48,606 | INFO     | sufficient remaining disk space (1800157528064 B)
[2025-11-25 16:53:46] 2025-11-26 00:52:48,606 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 16:53:46] 2025-11-26 00:52:48,606 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 16:53:46] 2025-11-26 00:52:48,606 | INFO     | update_server=False
[2025-11-25 16:53:46] 2025-11-26 00:52:48,606 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 16:53:46] 2025-11-26 00:52:48,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:53:46] 2025-11-26 00:52:48,628 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 16:53:46] 2025-11-26 00:52:48,628 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 16:53:46] 2025-11-26 00:52:48,629 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:53:46] 2025-11-26 00:52:48,629 | INFO     | will abort loop
[2025-11-25 16:53:46] 2025-11-26 00:52:49,023 | INFO     | all job control threads have been joined
[2025-11-25 16:53:46] 2025-11-26 00:52:49,551 | INFO     | all data control threads have been joined
[2025-11-25 16:53:46] 2025-11-26 00:52:49,611 | INFO     | [job] retrieve thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:49,612 | INFO     | [job] queue monitor thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:49,634 | INFO     | [job] job monitor thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:49,826 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 16:53:46] 2025-11-26 00:52:49,931 | INFO     | all payload control threads have been joined
[2025-11-25 16:53:46] 2025-11-26 00:52:49,970 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:50,029 | INFO     | [job] control thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:50,265 | INFO     | [data] copytool_in thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:50,370 | INFO     | [payload] failed_post thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:50,557 | INFO     | [data] control thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:50,640 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:50,870 | INFO     | [job] validate thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:50,911 | INFO     | [payload] validate_post thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:50,936 | INFO     | [payload] control thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:51,015 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:51,034 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:51,330 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 16:53:46] 2025-11-26 00:52:51,832 | INFO     | [data] copytool_out thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:52:55,335 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 16:53:46] 2025-11-26 00:53:18,322 | INFO     | PID=3886617 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 16:53:46] 2025-11-26 00:53:18,322 | INFO     | .. there are 28 such processes running
[2025-11-25 16:53:46] 2025-11-26 00:53:18,322 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 16:53:46] 2025-11-26 00:53:18,322 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 16:53:46] 2025-11-26 00:53:18,322 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 16:53:46] 2025-11-26 00:53:39,760 | INFO     | [monitor] cgroup control has ended
[2025-11-25 16:53:46] 2025-11-26 00:53:40,928 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140153581909824)>', '<ExcThread(monitor, started 140152894646016)>']
[2025-11-25 16:53:46] 2025-11-26 00:53:41,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 16:53:46] 2025-11-26 00:53:41,443 | INFO     | [monitor] control thread has ended
[2025-11-25 16:53:46] 2025-11-26 00:53:45,953 | INFO     | all workflow threads have been joined
[2025-11-25 16:53:46] 2025-11-26 00:53:45,954 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 16:53:46] 2025-11-26 00:53:45,954 | INFO     | traces error code: 0
[2025-11-25 16:53:46] 2025-11-26 00:53:45,954 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 16:53:46] 2025-11-26 00:53:46,076 [wrapper] ==== pilot stdout END ====
[2025-11-25 16:53:46] 2025-11-26 00:53:46,079 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 16:53:46] 2025-11-26 00:53:46,080 [wrapper] pilotpid: 3886617
[2025-11-25 16:53:46] 2025-11-26 00:53:46,082 [wrapper] Pilot exit status: 0
[2025-11-25 16:53:46] 2025-11-26 00:53:46,089 [wrapper] pandaids: 6891570637
[2025-11-25 16:53:46] 2025-11-26 00:53:46,133 [wrapper] cleanup supervisor_pilot 3886623 3886618
[2025-11-25 16:53:46] 2025-11-26 00:53:46,135 [wrapper] Test setup, not cleaning
[2025-11-25 16:53:46] 2025-11-26 00:53:46,137 [wrapper] apfmon messages muted
[2025-11-25 16:53:46] 2025-11-26 00:53:46,139 [wrapper] ==== wrapper stdout END ====
[2025-11-25 16:53:46] 2025-11-26 00:53:46,140 [wrapper] ==== wrapper stderr END ====
[2025-11-25 16:53:46]  *** Error codes and diagnostics ***
[2025-11-25 16:53:46]     "exeErrorCode": 65,
[2025-11-25 16:53:46]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 16:53:46]     "pilotErrorCode": 1305,
[2025-11-25 16:53:46]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 16:53:46]  *** Listing of results directory ***
[2025-11-25 16:53:46] total 400956
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc    576529 Nov 18 07:15 pilot3.tar.gz
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc      5112 Nov 18 07:39 queuedata.json
[2025-11-25 16:53:46] -rwx------. 1 boinc boinc     36292 Nov 18 07:40 runpilot2-wrapper.sh
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc       100 Nov 25 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 16:53:46] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 16:48 run_atlas
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc       105 Nov 25 16:48 job.xml
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc      6595 Nov 25 16:48 init_data.xml
[2025-11-25 16:53:46] -rw-r--r--. 2 boinc boinc 406372745 Nov 25 16:48 EVNT.47493065._000243.pool.root.1
[2025-11-25 16:53:46] -rw-r--r--. 2 boinc boinc     15120 Nov 25 16:48 start_atlas.sh
[2025-11-25 16:53:46] drwxrwx--x. 2 boinc boinc      4096 Nov 25 16:48 shared
[2025-11-25 16:53:46] -rw-r--r--. 2 boinc boinc    590094 Nov 25 16:48 input.tar.gz
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc         0 Nov 25 16:48 boinc_lockfile
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc      2773 Nov 25 16:48 pandaJob.out
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc    991877 Nov 25 16:48 agis_schedconf.cvmfs.json
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc   1516240 Nov 25 16:48 agis_ddmendpoints.agis.ALL.json
[2025-11-25 16:53:46] drwx------. 5 boinc boinc      4096 Nov 25 16:48 pilot3
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc       524 Nov 25 16:50 boinc_task_state.xml
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc       999 Nov 25 16:50 memory_monitor_summary.json
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc     47759 Nov 25 16:50 log.47493068._002429.job.log.tgz.1
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc        95 Nov 25 16:52 pilot_heartbeat.json
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc     10335 Nov 25 16:52 heartbeat.json
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc      8192 Nov 25 16:53 boinc_mmap_file
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc      5009 Nov 25 16:53 pilotlog.txt
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc        23 Nov 25 16:53 wrapper_checkpoint.txt
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc     98963 Nov 25 16:53 log.47493068._002429.job.log.1
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc       186 Nov 25 16:53 output.list
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc       620 Nov 25 16:53 runtime_log
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc    163840 Nov 25 16:53 result.tar.gz
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc      8528 Nov 25 16:53 runtime_log.err
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc       645 Nov 25 16:53 NleLDmkzcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpdFKDmUzacNn.diag
[2025-11-25 16:53:46] -rw-r--r--. 1 boinc boinc     22432 Nov 25 16:53 stderr.txt
[2025-11-25 16:53:46] No HITS result produced
[2025-11-25 16:53:46]  *** Contents of shared directory: ***
[2025-11-25 16:53:46] total 397612
[2025-11-25 16:53:46] -rw-r--r--. 2 boinc boinc 406372745 Nov 25 16:48 ATLAS.root_0
[2025-11-25 16:53:46] -rw-r--r--. 2 boinc boinc     15120 Nov 25 16:48 start_atlas.sh
[2025-11-25 16:53:46] -rw-r--r--. 2 boinc boinc    590094 Nov 25 16:48 input.tar.gz
[2025-11-25 16:53:46] -rw-------. 1 boinc boinc    163840 Nov 25 16:53 result.tar.gz
16:53:48 (3882724): run_atlas exited; CPU time 41.720513
16:53:48 (3882724): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN