Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:42:49 (3375354): wrapper (7.7.26015): starting
19:42:49 (3375354): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:42:49] Arguments: --nthreads 8
[2025-11-25 19:42:49] Threads: 8
[2025-11-25 19:42:49] Checking for CVMFS
[2025-11-25 19:42:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:42:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:42:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:42:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:42:50] 2.13.3.0 11959 29345 375432 153303 2 539 18701974 32935936 44419 16776704 0 145208725 99.493 190750376 34982 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:42:50] CVMFS is ok
[2025-11-25 19:42:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:42:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:42:50] Further information can be found at the LHC@home message board.
[2025-11-25 19:42:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:42:50] Checking for apptainer binary...
[2025-11-25 19:42:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:42:50] Running /usr/bin/apptainer --version
[2025-11-25 19:42:51] apptainer version 1.4.4-1.el9
[2025-11-25 19:42:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:42:51] c6-12-27-3.aglt2.org
[2025-11-25 19:42:51] apptainer works
[2025-11-25 19:42:51] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:42:51] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:42:51] Starting ATLAS job with PandaID=6896577835
[2025-11-25 19:42:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:40:06 (3375354): BOINC client no longer exists - exiting
22:40:06 (3375354): timer handler: client dead, exiting
22:40:58 (92912): wrapper (7.7.26015): starting
22:40:58 (92912): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:40:58] Arguments: --nthreads 8
[2025-11-25 22:40:58] Threads: 8
[2025-11-25 22:40:58] This job has been restarted, cleaning up previous attempt
[2025-11-25 22:40:58] Checking for CVMFS
[2025-11-25 22:40:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:40:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:40:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:40:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:40:58] 2.13.3.0 11959 29524 360564 153307 0 114 23867828 32935936 38194 16776704 0 146671134 99.494 192036547 34946 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:40:58] CVMFS is ok
[2025-11-25 22:40:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:40:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:40:58] Further information can be found at the LHC@home message board.
[2025-11-25 22:40:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:40:58] Checking for apptainer binary...
[2025-11-25 22:40:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:40:58] Running /usr/bin/apptainer --version
[2025-11-25 22:40:58] apptainer version 1.4.4-1.el9
[2025-11-25 22:40:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:40:58] c6-12-27-3.aglt2.org
[2025-11-25 22:40:58] apptainer works
[2025-11-25 22:40:58] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:40:58] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:40:58] Starting ATLAS job with PandaID=6896577835
[2025-11-25 22:40:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:32:14]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:32:14] 2025-11-27 05:31:35,923 | INFO     | monitor loop #4753: job 0:6896577835 is in state 'finished'
[2025-11-27 00:32:14] 2025-11-27 05:31:35,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:32:14] 2025-11-27 05:31:36,212 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 00:32:14] 2025-11-27 05:31:36,248 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2675.084572916667
[2025-11-27 00:32:14] 2025-11-27 05:31:36,278 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6896577835/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:32:14] 2025-11-27 05:31:36,279 | INFO     | extracted standard info from prmon json
[2025-11-27 00:32:14] 2025-11-27 05:31:36,279 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:32:14] 2025-11-27 05:31:36,279 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:32:14] 2025-11-27 05:31:36,344 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:32:14] 2025-11-27 05:31:36,351 | INFO     | sum of square deviations: 1097570787946.17
[2025-11-27 00:32:14] 2025-11-27 05:31:36,476 | INFO     | time since job start (93028s) is within the limit (172800.0s)
[2025-11-27 00:32:14] 2025-11-27 05:31:36,487 | INFO     | sum of deviations: 5072262349801.097
[2025-11-27 00:32:14] 2025-11-27 05:31:36,488 | INFO     | mean x: 1764174950.242782
[2025-11-27 00:32:14] 2025-11-27 05:31:36,488 | INFO     | mean y: 2954155.3267716537
[2025-11-27 00:32:14] 2025-11-27 05:31:36,488 | INFO     | intersect: -8149921519.620178
[2025-11-27 00:32:14] 2025-11-27 05:31:36,490 | INFO     | chi2: 10.475903249180568
[2025-11-27 00:32:14] 2025-11-27 05:31:36,492 | INFO     | sum of square deviations: 1086804958333.4065
[2025-11-27 00:32:14] 2025-11-27 05:31:36,646 | INFO     | sum of deviations: 5581980325602.933
[2025-11-27 00:32:14] 2025-11-27 05:31:36,654 | INFO     | mean x: 1764174797.7544436
[2025-11-27 00:32:14] 2025-11-27 05:31:36,654 | INFO     | mean y: 2961376.1955233705
[2025-11-27 00:32:14] 2025-11-27 05:31:36,654 | INFO     | intersect: -9058083971.89611
[2025-11-27 00:32:14] 2025-11-27 05:31:36,656 | INFO     | chi2: 7.407676957195309
[2025-11-27 00:32:14] 2025-11-27 05:31:36,656 | INFO     | current chi2=7.407676957195309 (change=29.288417609481627 %)
[2025-11-27 00:32:14] 2025-11-27 05:31:36,667 | INFO     | sum of square deviations: 1076109873860.195
[2025-11-27 00:32:14] 2025-11-27 05:31:36,799 | INFO     | sum of deviations: 6195882824647.908
[2025-11-27 00:32:14] 2025-11-27 05:31:36,799 | INFO     | mean x: 1764174645.2668428
[2025-11-27 00:32:14] 2025-11-27 05:31:36,799 | INFO     | mean y: 2970129.35667107
[2025-11-27 00:32:14] 2025-11-27 05:31:36,799 | INFO     | intersect: -10154560853.123863
[2025-11-27 00:32:14] 2025-11-27 05:31:36,810 | INFO     | chi2: 3.236794491786633
[2025-11-27 00:32:14] 2025-11-27 05:31:36,810 | INFO     | current chi2=3.236794491786633 (change=56.30486439284271 %)
[2025-11-27 00:32:14] 2025-11-27 05:31:36,812 | INFO     | sum of square deviations: 1065485024982.6287
[2025-11-27 00:32:14] 2025-11-27 05:31:36,897 | INFO     | sum of deviations: 6400878151975.706
[2025-11-27 00:32:14] 2025-11-27 05:31:36,901 | INFO     | mean x: 1764174492.7779987
[2025-11-27 00:32:14] 2025-11-27 05:31:36,901 | INFO     | mean y: 2973069.5573227303
[2025-11-27 00:32:14] 2025-11-27 05:31:36,901 | INFO     | intersect: -10595266889.075243
[2025-11-27 00:32:14] 2025-11-27 05:31:36,903 | INFO     | chi2: 2.5385656138104906
[2025-11-27 00:32:14] 2025-11-27 05:31:36,903 | INFO     | current chi2=2.5385656138104906 (change=21.571615984514874 %)
[2025-11-27 00:32:14] 2025-11-27 05:31:36,903 | INFO     | right removable region: 1508
[2025-11-27 00:32:14] 2025-11-27 05:31:36,909 | INFO     | sum of square deviations: 1086801757425.9155
[2025-11-27 00:32:14] 2025-11-27 05:31:37,000 | INFO     | sum of deviations: 4690057961086.174
[2025-11-27 00:32:14] 2025-11-27 05:31:37,000 | INFO     | mean x: 1764175102.7537854
[2025-11-27 00:32:14] 2025-11-27 05:31:37,000 | INFO     | mean y: 2959562.8854509545
[2025-11-27 00:32:14] 2025-11-27 05:31:37,000 | INFO     | intersect: -7610281241.046937
[2025-11-27 00:32:14] 2025-11-27 05:31:37,010 | INFO     | chi2: 8.652119928094573
[2025-11-27 00:32:14] 2025-11-27 05:31:37,010 | INFO     | current chi2=8.652119928094573 (change=17.40931810561207 %)
[2025-11-27 00:32:14] 2025-11-27 05:31:37,011 | INFO     | left removable region: 10
[2025-11-27 00:32:14] 2025-11-27 05:31:37,012 | INFO     | sum of square deviations: 1042351273340.0187
[2025-11-27 00:32:14] 2025-11-27 05:31:37,159 | INFO     | sum of deviations: 5899559368049.606
[2025-11-27 00:32:14] 2025-11-27 05:31:37,159 | INFO     | mean x: 1764174767.2990654
[2025-11-27 00:32:14] 2025-11-27 05:31:37,159 | INFO     | mean y: 2980874.212950601
[2025-11-27 00:32:14] 2025-11-27 05:31:37,159 | INFO     | intersect: -9981996399.279436
[2025-11-27 00:32:14] 2025-11-27 05:31:37,169 | INFO     | chi2: 0.5669831923501847
[2025-11-27 00:32:14] 2025-11-27 05:31:37,169 | INFO     | current memory leak: 5.66 B/s (using 1498 data points, chi2=0.57)
[2025-11-27 00:32:14] 2025-11-27 05:31:37,171 | INFO     | could have reported an average CPU frequency of 2720 MHz (54 samples)
[2025-11-27 00:32:14] 2025-11-27 05:31:37,171 | INFO     | ..............................
[2025-11-27 00:32:14] 2025-11-27 05:31:37,171 | INFO     | . Timing measurements:
[2025-11-27 00:32:14] 2025-11-27 05:31:37,172 | INFO     | . get job = 0 s
[2025-11-27 00:32:14] 2025-11-27 05:31:37,180 | INFO     | . initial setup = 1 s
[2025-11-27 00:32:14] 2025-11-27 05:31:37,180 | INFO     | . payload setup = 5 s
[2025-11-27 00:32:14] 2025-11-27 05:31:37,180 | INFO     | . stage-in = 0 s
[2025-11-27 00:32:14] 2025-11-27 05:31:37,180 | INFO     | . payload execution = 92965 s
[2025-11-27 00:32:14] 2025-11-27 05:31:37,180 | INFO     | . stage-out = 10 s
[2025-11-27 00:32:14] 2025-11-27 05:31:37,180 | INFO     | . log creation = 2 s
[2025-11-27 00:32:14] 2025-11-27 05:31:37,180 | INFO     | ..............................
[2025-11-27 00:32:14] 2025-11-27 05:31:38,209 | INFO     | 
[2025-11-27 00:32:14] 2025-11-27 05:31:38,209 | INFO     | job summary report
[2025-11-27 00:32:14] 2025-11-27 05:31:38,209 | INFO     | --------------------------------------------------
[2025-11-27 00:32:14] 2025-11-27 05:31:38,209 | INFO     | PanDA job id: 6896577835
[2025-11-27 00:32:14] 2025-11-27 05:31:38,209 | INFO     | task id: 47556161
[2025-11-27 00:32:14] 2025-11-27 05:31:38,209 | INFO     | errors: (none)
[2025-11-27 00:32:14] 2025-11-27 05:31:38,209 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | pilot state: finished 
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | transexitcode: 0
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | exeerrorcode: 0
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | exeerrordiag: 
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | exitcode: 0
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | exitmsg: OK
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | cpuconsumptiontime: 265609 s
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | nevents: 1000
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | neventsw: 0
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | pid: 173854
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | pgrp: 173854
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | corecount: 8
[2025-11-27 00:32:14] 2025-11-27 05:31:38,210 | INFO     | event service: False
[2025-11-27 00:32:14] 2025-11-27 05:31:38,211 | INFO     | sizes: {0: 2284262, 4: 2284524, 11: 2284552, 92975: 2350563, 92976: 2350562, 92987: 2359640, 92990: 2359824, 93014: 2360070}
[2025-11-27 00:32:14] 2025-11-27 05:31:38,211 | INFO     | --------------------------------------------------
[2025-11-27 00:32:14] 2025-11-27 05:31:38,211 | INFO     | 
[2025-11-27 00:32:14] 2025-11-27 05:31:38,211 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 00:32:14] 2025-11-27 05:31:38,332 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,332 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,332 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,333 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,333 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,333 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,333 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,333 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,333 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,333 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,333 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,333 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,333 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,333 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,334 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,334 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,334 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,334 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:32:14] 2025-11-27 05:31:38,334 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,334 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:32:14] 2025-11-27 05:31:38,334 | INFO     | job 6896577835 has completed (purged errors)
[2025-11-27 00:32:14] 2025-11-27 05:31:38,334 | INFO     | overall cleanup function is called
[2025-11-27 00:32:14] 2025-11-27 05:31:39,376 | INFO     | --- collectZombieJob: --- 10, [173854]
[2025-11-27 00:32:14] 2025-11-27 05:31:39,376 | INFO     | zombie collector waiting for pid 173854
[2025-11-27 00:32:14] 2025-11-27 05:31:39,376 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:32:14] 2025-11-27 05:31:39,376 | INFO     | collected zombie processes
[2025-11-27 00:32:14] 2025-11-27 05:31:39,376 | INFO     | will attempt to kill all subprocesses of pid=173854
[2025-11-27 00:32:14] 2025-11-27 05:31:41,086 | INFO     | process IDs to be killed: [173854] (in reverse order)
[2025-11-27 00:32:14] 2025-11-27 05:31:41,614 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:32:14] 2025-11-27 05:31:41,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:32:14] 2025-11-27 05:31:41,781 | INFO     | did not find any defunct processes belonging to 173854
[2025-11-27 00:32:14] 2025-11-27 05:31:42,045 | INFO     | did not find any defunct processes belonging to 173854
[2025-11-27 00:32:14] 2025-11-27 05:31:42,069 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:32:14] 2025-11-27 05:31:42,069 | INFO     | ready for new job
[2025-11-27 00:32:14] 2025-11-27 05:31:42,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:32:14] 2025-11-27 05:31:42,136 | INFO     | ***************************************
[2025-11-27 00:32:14] 2025-11-27 05:31:42,136 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:32:14] 2025-11-27 05:31:42,136 | INFO     | ***************************************
[2025-11-27 00:32:14] 2025-11-27 05:31:42,136 | INFO     | 
[2025-11-27 00:32:14] 2025-11-27 05:31:42,175 | INFO     | architecture information:
[2025-11-27 00:32:14] 2025-11-27 05:31:42,204 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:32:14] 2025-11-27 05:31:42,308 | INFO     | cat /etc/os-release:
[2025-11-27 00:32:14] NAME="CentOS Linux"
[2025-11-27 00:32:14] VERSION="7 (Core)"
[2025-11-27 00:32:14] ID="centos"
[2025-11-27 00:32:14] ID_LIKE="rhel fedora"
[2025-11-27 00:32:14] VERSION_ID="7"
[2025-11-27 00:32:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:32:14] ANSI_COLOR="0;31"
[2025-11-27 00:32:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:32:14] HOME_URL="https://www.centos.org/"
[2025-11-27 00:32:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:32:14] 
[2025-11-27 00:32:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:32:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:32:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:32:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:32:14] 
[2025-11-27 00:32:14] 2025-11-27 05:31:42,309 | INFO     | ***************************************
[2025-11-27 00:32:14] 2025-11-27 05:31:42,812 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 00:32:14] 2025-11-27 05:31:42,926 | INFO     | sufficient remaining disk space (82160123904 B)
[2025-11-27 00:32:14] 2025-11-27 05:31:42,926 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:32:14] 2025-11-27 05:31:42,927 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:32:14] 2025-11-27 05:31:42,927 | INFO     | update_server=False
[2025-11-27 00:32:14] 2025-11-27 05:31:42,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:32:14] 2025-11-27 05:31:42,927 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:32:14] 2025-11-27 05:31:42,927 | INFO     | aborting loop
[2025-11-27 00:32:14] 2025-11-27 05:31:42,927 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:32:14] 2025-11-27 05:31:43,050 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:32:14] 2025-11-27 05:31:43,076 | INFO     | all data control threads have been joined
[2025-11-27 00:32:14] 2025-11-27 05:31:43,158 | INFO     | all job control threads have been joined
[2025-11-27 00:32:14] 2025-11-27 05:31:43,933 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:43,933 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:43,941 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:44,084 | INFO     | [data] control thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:44,164 | INFO     | [job] control thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:44,192 | INFO     | all payload control threads have been joined
[2025-11-27 00:32:14] 2025-11-27 05:31:44,274 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:32:14] 2025-11-27 05:31:44,630 | INFO     | [job] validate thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:44,790 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:44,791 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:44,791 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:44,791 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:44,795 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:45,198 | INFO     | [payload] control thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:45,477 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:45,477 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:46,281 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:31:47,059 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:32:14] 2025-11-27 05:32:04,812 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:32:14] 2025-11-27 05:32:05,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140539944257344)>', '<ExcThread(monitor, started 140539307484928)>']
[2025-11-27 00:32:14] 2025-11-27 05:32:10,338 | INFO     | all workflow threads have been joined
[2025-11-27 00:32:14] 2025-11-27 05:32:10,348 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:32:14] 2025-11-27 05:32:10,348 | INFO     | traces error code: 0
[2025-11-27 00:32:14] 2025-11-27 05:32:10,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:32:14] 2025-11-27 05:32:13,100 | INFO     | PID=123584 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 00:32:14] 2025-11-27 05:32:13,101 | INFO     | .. there are 68 such processes running
[2025-11-27 00:32:14] 2025-11-27 05:32:13,101 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:32:14] 2025-11-27 05:32:13,101 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:32:14] 2025-11-27 05:32:13,101 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:32:14] 2025-11-27 05:32:13,102 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:32:14] 2025-11-27 05:32:13,102 | INFO     | [monitor] control thread has ended
[2025-11-27 00:32:14] 2025-11-27 05:32:14,049 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:32:14] 2025-11-27 05:32:14,061 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:32:14] 2025-11-27 05:32:14,066 [wrapper] pilotpid: 123584
[2025-11-27 00:32:14] 2025-11-27 05:32:14,071 [wrapper] Pilot exit status: 0
[2025-11-27 00:32:14] 2025-11-27 05:32:14,205 [wrapper] pandaids: 6896577835 6896577835
[2025-11-27 00:32:14] 2025-11-27 05:32:14,393 [wrapper] cleanup supervisor_pilot 3930238 123585
[2025-11-27 00:32:14] 2025-11-27 05:32:14,396 [wrapper] Test setup, not cleaning
[2025-11-27 00:32:14] 2025-11-27 05:32:14,400 [wrapper] apfmon messages muted
[2025-11-27 00:32:14] 2025-11-27 05:32:14,405 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:32:14] 2025-11-27 05:32:14,409 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:32:14]  *** Error codes and diagnostics ***
[2025-11-27 00:32:14]     "exeErrorCode": 0,
[2025-11-27 00:32:14]     "exeErrorDiag": "",
[2025-11-27 00:32:14]     "pilotErrorCode": 0,
[2025-11-27 00:32:14]     "pilotErrorDiag": "",
[2025-11-27 00:32:14]  *** Listing of results directory ***
[2025-11-27 00:32:14] total 1720512
[2025-11-27 00:32:14] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:25 queuedata.json
[2025-11-27 00:32:14] -rwx------. 1 boincer umatlas     36292 Nov 25 00:27 runpilot2-wrapper.sh
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:32:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:42 run_atlas
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:42 job.xml
[2025-11-27 00:32:14] -rw-r--r--. 3 boincer umatlas 410490042 Nov 25 19:42 EVNT.47483658._002103.pool.root.1
[2025-11-27 00:32:14] -rw-r--r--. 3 boincer umatlas 410490042 Nov 25 19:42 ATLAS.root_0
[2025-11-27 00:32:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:42 start_atlas.sh
[2025-11-27 00:32:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:42 shared
[2025-11-27 00:32:14] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 19:42 input.tar.gz
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:42 boinc_lockfile
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 22:40 pandaJob.out
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas        57 Nov 25 22:40 setup.sh.local
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas    991877 Nov 25 22:41 agis_schedconf.cvmfs.json
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas       533 Nov 27 00:08 boinc_task_state.xml
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas 910740908 Nov 27 00:30 HITS.47556161._000865.pool.root.1
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 00:30 init_data.xml
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas      1070 Nov 27 00:30 memory_monitor_summary.json
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas   1516240 Nov 27 00:31 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas   2433755 Nov 27 00:31 log.47556161._000865.job.log.tgz.1
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas        95 Nov 27 00:31 pilot_heartbeat.json
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas      8652 Nov 27 00:31 heartbeat.json
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 00:31 boinc_mmap_file
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas        29 Nov 27 00:32 wrapper_checkpoint.txt
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas       822 Nov 27 00:32 pilotlog.txt
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas  10641655 Nov 27 00:32 log.47556161._000865.job.log.1
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas       353 Nov 27 00:32 output.list
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas       620 Nov 27 00:32 runtime_log
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas  13096960 Nov 27 00:32 result.tar.gz
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas       792 Nov 27 00:32 Tt5MDmfl0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkAMKDmg2PUYn.diag
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas      9438 Nov 27 00:32 runtime_log.err
[2025-11-27 00:32:14] -rw-r--r--. 1 boincer umatlas     23618 Nov 27 00:32 stderr.txt
[2025-11-27 00:32:14] HITS file was successfully produced:
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas 910740908 Nov 27 00:30 shared/HITS.pool.root.1
[2025-11-27 00:32:14]  *** Contents of shared directory: ***
[2025-11-27 00:32:14] total 1303664
[2025-11-27 00:32:14] -rw-r--r--. 3 boincer umatlas 410490042 Nov 25 19:42 ATLAS.root_0
[2025-11-27 00:32:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:42 start_atlas.sh
[2025-11-27 00:32:14] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 19:42 input.tar.gz
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas 910740908 Nov 27 00:30 HITS.pool.root.1
[2025-11-27 00:32:14] -rw-------. 1 boincer umatlas  13096960 Nov 27 00:32 result.tar.gz
00:32:15 (92912): run_atlas exited; CPU time 270063.829373
00:32:15 (92912): called boinc_finish(0)

</stderr_txt>
]]>

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