Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:38:38 (2498051): wrapper (7.7.26015): starting
01:38:38 (2498051): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 01:38:38] Arguments: --nthreads 3
[2025-11-26 01:38:38] Threads: 3
[2025-11-26 01:38:38] Checking for CVMFS
[2025-11-26 01:38:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 01:38:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 01:38:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 01:38:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 01:38:38] 2.9.2.0 2184780 68 59724 153303 3 88 35481455 36864000 0 130560 0 938986 100.000 1303 10680 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 01:38:38] CVMFS is ok
[2025-11-26 01:38:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 01:38:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 01:38:38] Further information can be found at the LHC@home message board.
[2025-11-26 01:38:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 01:38:38] Checking for apptainer binary...
[2025-11-26 01:38:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 01:38:38] Running /usr/bin/apptainer --version
[2025-11-26 01:38:38] apptainer version 1.4.1-1.1
[2025-11-26 01:38:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 01:38:38] thA335
[2025-11-26 01:38:38] apptainer works
[2025-11-26 01:38:38] Set ATHENA_PROC_NUMBER=3
[2025-11-26 01:38:38] Set ATHENA_CORE_NUMBER=3
[2025-11-26 01:38:38] Starting ATLAS job with PandaID=6896558502
[2025-11-26 01:38:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 01:42:56]  *** The last 200 lines of the pilot log: ***
[2025-11-26 01:42:56] VERSION_ID="7"
[2025-11-26 01:42:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 01:42:56] ANSI_COLOR="0;31"
[2025-11-26 01:42:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 01:42:56] HOME_URL="https://www.centos.org/"
[2025-11-26 01:42:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 01:42:56] 
[2025-11-26 01:42:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 01:42:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 01:42:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 01:42:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 01:42:56] 
[2025-11-26 01:42:56] 2025-11-26 00:42:08,254 | INFO     | ***************************************
[2025-11-26 01:42:56] 2025-11-26 00:42:08,758 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 01:42:56] 2025-11-26 00:42:08,772 | INFO     | sufficient remaining disk space (826536886272 B)
[2025-11-26 01:42:56] 2025-11-26 00:42:08,772 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 01:42:56] 2025-11-26 00:42:08,772 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 01:42:56] 2025-11-26 00:42:08,772 | INFO     | update_server=False
[2025-11-26 01:42:56] 2025-11-26 00:42:08,772 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 01:42:56] 2025-11-26 00:42:08,772 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:42:56] 2025-11-26 00:42:08,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:42:56] 2025-11-26 00:42:08,773 | INFO     | aborting loop
[2025-11-26 01:42:56] 2025-11-26 00:42:09,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 01:42:56] 2025-11-26 00:42:09,644 | INFO     | all job control threads have been joined
[2025-11-26 01:42:56] 2025-11-26 00:42:09,778 | INFO     | [job] queue monitor thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:09,779 | INFO     | [job] retrieve thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:09,779 | INFO     | [job] job monitor thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:09,790 | INFO     | all data control threads have been joined
[2025-11-26 01:42:56] 2025-11-26 00:42:09,800 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:10,003 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:10,062 | INFO     | [payload] failed_post thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:10,203 | INFO     | all payload control threads have been joined
[2025-11-26 01:42:56] 2025-11-26 00:42:10,650 | INFO     | [job] control thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:10,796 | INFO     | [data] control thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:10,846 | INFO     | [data] copytool_in thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:10,930 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:11,093 | INFO     | [payload] validate_post thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:11,154 | INFO     | [job] validate thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:11,210 | INFO     | [payload] control thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:11,248 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:11,540 | INFO     | [data] copytool_out thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:11,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 01:42:56] 2025-11-26 00:42:15,845 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 01:42:56] 2025-11-26 00:42:38,732 | INFO     | PID=2501779 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 01:42:56] 2025-11-26 00:42:38,733 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 01:42:56] 2025-11-26 00:42:38,733 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 01:42:56] 2025-11-26 00:42:38,733 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 01:42:56] 2025-11-26 00:42:49,934 | INFO     | [monitor] cgroup control has ended
[2025-11-26 01:42:56] 2025-11-26 00:42:51,703 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139829435348800)>', '<ExcThread(monitor, started 139828951766784)>']
[2025-11-26 01:42:56] 2025-11-26 00:42:51,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 01:42:56] 2025-11-26 00:42:51,802 | INFO     | [monitor] control thread has ended
[2025-11-26 01:42:56] 2025-11-26 00:42:56,729 | INFO     | all workflow threads have been joined
[2025-11-26 01:42:56] 2025-11-26 00:42:56,730 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 01:42:56] 2025-11-26 00:42:56,730 | INFO     | traces error code: 0
[2025-11-26 01:42:56] 2025-11-26 00:42:56,731 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 01:42:56] 2025-11-26 00:42:56,778 [wrapper] ==== pilot stdout END ====
[2025-11-26 01:42:56] 2025-11-26 00:42:56,781 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 01:42:56] 2025-11-26 00:42:56,784 [wrapper] pilotpid: 2501779
[2025-11-26 01:42:56] 2025-11-26 00:42:56,786 [wrapper] Pilot exit status: 0
[2025-11-26 01:42:56] 2025-11-26 00:42:56,793 [wrapper] pandaids: 6896558502
[2025-11-26 01:42:56] 2025-11-26 00:42:56,810 [wrapper] cleanup supervisor_pilot 2501785 2501780
[2025-11-26 01:42:56] 2025-11-26 00:42:56,812 [wrapper] Test setup, not cleaning
[2025-11-26 01:42:56] 2025-11-26 00:42:56,815 [wrapper] apfmon messages muted
[2025-11-26 01:42:56] 2025-11-26 00:42:56,817 [wrapper] ==== wrapper stdout END ====
[2025-11-26 01:42:56] 2025-11-26 00:42:56,819 [wrapper] ==== wrapper stderr END ====
[2025-11-26 01:42:56]  *** Error codes and diagnostics ***
[2025-11-26 01:42:56]     "exeErrorCode": 65,
[2025-11-26 01:42:56]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 01:42:56]     "pilotErrorCode": 1305,
[2025-11-26 01:42:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 01:42:56]  *** Listing of results directory ***
[2025-11-26 01:42:56] total 404644
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc    576529 Nov 25 05:09 pilot3.tar.gz
[2025-11-26 01:42:56] -rwx------ 1 boinc boinc     36292 Nov 25 06:05 runpilot2-wrapper.sh
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc      5112 Nov 25 06:05 queuedata.json
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc       100 Nov 26 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 01:42:56] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 01:38 run_atlas
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc       105 Nov 26 01:38 job.xml
[2025-11-26 01:42:56] -rw-r--r-- 2 boinc boinc 410162099 Nov 26 01:38 EVNT.47483658._003063.pool.root.1
[2025-11-26 01:42:56] -rw-r--r-- 2 boinc boinc    590104 Nov 26 01:38 input.tar.gz
[2025-11-26 01:42:56] -rw-r--r-- 2 boinc boinc     15847 Nov 26 01:38 start_atlas.sh
[2025-11-26 01:42:56] drwxrwx--x 2 boinc boinc      4096 Nov 26 01:38 shared
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc         0 Nov 26 01:38 boinc_setup_complete
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc      6196 Nov 26 01:38 init_data.xml
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc         0 Nov 26 01:38 boinc_lockfile
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc      2785 Nov 26 01:38 pandaJob.out
[2025-11-26 01:42:56] -rw------- 1 boinc boinc    991877 Nov 26 01:38 agis_schedconf.cvmfs.json
[2025-11-26 01:42:56] -rw------- 1 boinc boinc   1516240 Nov 26 01:38 agis_ddmendpoints.agis.ALL.json
[2025-11-26 01:42:56] drwx------ 5 boinc boinc      4096 Nov 26 01:38 pilot3
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc       523 Nov 26 01:39 boinc_task_state.xml
[2025-11-26 01:42:56] -rw------- 1 boinc boinc       982 Nov 26 01:39 memory_monitor_summary.json
[2025-11-26 01:42:56] -rw------- 1 boinc boinc     56001 Nov 26 01:40 log.47556173._000455.job.log.tgz.1
[2025-11-26 01:42:56] -rw------- 1 boinc boinc        95 Nov 26 01:41 pilot_heartbeat.json
[2025-11-26 01:42:56] -rw------- 1 boinc boinc      8394 Nov 26 01:42 heartbeat.json
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc      8192 Nov 26 01:42 boinc_mmap_file
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc        23 Nov 26 01:42 wrapper_checkpoint.txt
[2025-11-26 01:42:56] -rw------- 1 boinc boinc      4752 Nov 26 01:42 pilotlog.txt
[2025-11-26 01:42:56] -rw------- 1 boinc boinc     92494 Nov 26 01:42 log.47556173._000455.job.log.1
[2025-11-26 01:42:56] -rw------- 1 boinc boinc       186 Nov 26 01:42 output.list
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc       620 Nov 26 01:42 runtime_log
[2025-11-26 01:42:56] -rw------- 1 boinc boinc    163840 Nov 26 01:42 result.tar.gz
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc      8744 Nov 26 01:42 runtime_log.err
[2025-11-26 01:42:56] -rw------- 1 boinc boinc       648 Nov 26 01:42 27IKDmdQ0h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyKJKDme8UFLn.diag
[2025-11-26 01:42:56] -rw-r--r-- 1 boinc boinc      8919 Nov 26 01:42 stderr.txt
[2025-11-26 01:42:56] No HITS result produced
[2025-11-26 01:42:56]  *** Contents of shared directory: ***
[2025-11-26 01:42:56] total 401312
[2025-11-26 01:42:56] -rw-r--r-- 2 boinc boinc 410162099 Nov 26 01:38 ATLAS.root_0
[2025-11-26 01:42:56] -rw-r--r-- 2 boinc boinc    590104 Nov 26 01:38 input.tar.gz
[2025-11-26 01:42:56] -rw-r--r-- 2 boinc boinc     15847 Nov 26 01:38 start_atlas.sh
[2025-11-26 01:42:56] -rw------- 1 boinc boinc    163840 Nov 26 01:42 result.tar.gz
01:42:58 (2498051): run_atlas exited; CPU time 31.024657
01:42:58 (2498051): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN