Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:49:52 (629308): wrapper (7.7.26015): starting
19:49:52 (629308): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:49:52] Arguments: --nthreads 8
[2025-11-25 19:49:52] Threads: 8
[2025-11-25 19:49:52] Checking for CVMFS
[2025-11-25 19:49:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:49:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:49:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:49:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:49:54] 2.13.3.0 7489 29351 373444 153303 1 365 19173863 32935936 21732 16776704 0 189443729 99.647 180606052 41368 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:49:54] CVMFS is ok
[2025-11-25 19:49:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:49:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:49:54] Further information can be found at the LHC@home message board.
[2025-11-25 19:49:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:49:54] Checking for apptainer binary...
[2025-11-25 19:49:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:49:54] Running /usr/bin/apptainer --version
[2025-11-25 19:49:54] apptainer version 1.4.4-1.el9
[2025-11-25 19:49:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:49:54] c7-13-32.aglt2.org
[2025-11-25 19:49:54] apptainer works
[2025-11-25 19:49:54] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:49:54] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:49:54] Starting ATLAS job with PandaID=6896558436
[2025-11-25 19:49:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:08:29]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:08:29] 2025-11-26 16:07:52,393 | INFO     | time since job start (55051s) is within the limit (172800.0s)
[2025-11-26 11:08:29] 2025-11-26 16:07:53,254 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 11:08:29] 2025-11-26 16:07:53,258 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3290.6093593749997
[2025-11-26 11:08:29] 2025-11-26 16:07:53,269 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6896558436/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:08:29] 2025-11-26 16:07:53,269 | INFO     | extracted standard info from prmon json
[2025-11-26 11:08:29] 2025-11-26 16:07:53,269 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:08:29] 2025-11-26 16:07:53,269 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:08:29] 2025-11-26 16:07:53,285 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:08:29] 2025-11-26 16:07:53,286 | INFO     | sum of square deviations: 227545353420.3869
[2025-11-26 11:08:29] 2025-11-26 16:07:53,299 | INFO     | sum of deviations: 1720669817994.2393
[2025-11-26 11:08:29] 2025-11-26 16:07:53,299 | INFO     | mean x: 1764145759.3470066
[2025-11-26 11:08:29] 2025-11-26 16:07:53,299 | INFO     | mean y: 2913960.7372505544
[2025-11-26 11:08:29] 2025-11-26 16:07:53,300 | INFO     | intersect: -13337338068.241146
[2025-11-26 11:08:29] 2025-11-26 16:07:53,300 | INFO     | chi2: 5.232956130556757
[2025-11-26 11:08:29] 2025-11-26 16:07:53,301 | INFO     | sum of square deviations: 223782525855.7344
[2025-11-26 11:08:29] 2025-11-26 16:07:53,310 | INFO     | sum of deviations: 2002604386323.1113
[2025-11-26 11:08:29] 2025-11-26 16:07:53,310 | INFO     | mean x: 1764145606.8573022
[2025-11-26 11:08:29] 2025-11-26 16:07:53,310 | INFO     | mean y: 2925379.204013378
[2025-11-26 11:08:29] 2025-11-26 16:07:53,310 | INFO     | intersect: -15784213124.553074
[2025-11-26 11:08:29] 2025-11-26 16:07:53,311 | INFO     | chi2: 2.390052949327134
[2025-11-26 11:08:29] 2025-11-26 16:07:53,311 | INFO     | current chi2=2.390052949327134 (change=54.326906442595266 %)
[2025-11-26 11:08:29] 2025-11-26 16:07:53,312 | INFO     | sum of square deviations: 220061420003.39035
[2025-11-26 11:08:29] 2025-11-26 16:07:53,326 | INFO     | sum of deviations: 2007710029262.3713
[2025-11-26 11:08:29] 2025-11-26 16:07:53,326 | INFO     | mean x: 1764145454.367713
[2025-11-26 11:08:29] 2025-11-26 16:07:53,326 | INFO     | mean y: 2925583.7488789237
[2025-11-26 11:08:29] 2025-11-26 16:07:53,326 | INFO     | intersect: -16092092442.387245
[2025-11-26 11:08:29] 2025-11-26 16:07:53,328 | INFO     | chi2: 2.3081074863338054
[2025-11-26 11:08:29] 2025-11-26 16:07:53,328 | INFO     | current chi2=2.3081074863338054 (change=3.428604500850018 %)
[2025-11-26 11:08:29] 2025-11-26 16:07:53,328 | INFO     | right removable region: 891
[2025-11-26 11:08:29] 2025-11-26 16:07:53,329 | INFO     | sum of square deviations: 223781509595.7345
[2025-11-26 11:08:29] 2025-11-26 16:07:53,347 | INFO     | sum of deviations: 1474064819242.9822
[2025-11-26 11:08:29] 2025-11-26 16:07:53,347 | INFO     | mean x: 1764145911.8573022
[2025-11-26 11:08:29] 2025-11-26 16:07:53,347 | INFO     | mean y: 2923939.1092530657
[2025-11-26 11:08:29] 2025-11-26 16:07:53,348 | INFO     | intersect: -11617631438.222725
[2025-11-26 11:08:29] 2025-11-26 16:07:53,348 | INFO     | chi2: 3.070112868204254
[2025-11-26 11:08:29] 2025-11-26 16:07:53,348 | INFO     | current chi2=3.070112868204254 (change=41.33119423117328 %)
[2025-11-26 11:08:29] 2025-11-26 16:07:53,349 | INFO     | sum of square deviations: 220059988650.3443
[2025-11-26 11:08:29] 2025-11-26 16:07:53,418 | INFO     | sum of deviations: 1420779304522.0115
[2025-11-26 11:08:29] 2025-11-26 16:07:53,418 | INFO     | mean x: 1764146064.3553813
[2025-11-26 11:08:29] 2025-11-26 16:07:53,418 | INFO     | mean y: 2926121.779147982
[2025-11-26 11:08:29] 2025-11-26 16:07:53,419 | INFO     | intersect: -11386978211.86429
[2025-11-26 11:08:29] 2025-11-26 16:07:53,419 | INFO     | chi2: 3.0439910887281156
[2025-11-26 11:08:29] 2025-11-26 16:07:53,419 | INFO     | current chi2=3.0439910887281156 (change=0.8508410145656151 %)
[2025-11-26 11:08:29] 2025-11-26 16:07:53,420 | INFO     | left removable region: 20
[2025-11-26 11:08:29] 2025-11-26 16:07:53,420 | INFO     | sum of square deviations: 204880310257.28812
[2025-11-26 11:08:29] 2025-11-26 16:07:53,440 | INFO     | sum of deviations: 1647722849900.3684
[2025-11-26 11:08:29] 2025-11-26 16:07:53,449 | INFO     | mean x: 1764146033.8840413
[2025-11-26 11:08:29] 2025-11-26 16:07:53,449 | INFO     | mean y: 2940187.508610792
[2025-11-26 11:08:29] 2025-11-26 16:07:53,450 | INFO     | intersect: -14184971412.886093
[2025-11-26 11:08:29] 2025-11-26 16:07:53,450 | INFO     | chi2: 0.09687091258894258
[2025-11-26 11:08:29] 2025-11-26 16:07:53,451 | INFO     | current memory leak: 8.04 B/s (using 871 data points, chi2=0.10)
[2025-11-26 11:08:29] 2025-11-26 16:07:53,452 | INFO     | could have reported an average CPU frequency of 3290 MHz (34 samples)
[2025-11-26 11:08:29] 2025-11-26 16:07:53,452 | INFO     | ..............................
[2025-11-26 11:08:29] 2025-11-26 16:07:53,453 | INFO     | . Timing measurements:
[2025-11-26 11:08:29] 2025-11-26 16:07:53,453 | INFO     | . get job = 0 s
[2025-11-26 11:08:29] 2025-11-26 16:07:53,453 | INFO     | . initial setup = 3 s
[2025-11-26 11:08:29] 2025-11-26 16:07:53,453 | INFO     | . payload setup = 13 s
[2025-11-26 11:08:29] 2025-11-26 16:07:53,453 | INFO     | . stage-in = 0 s
[2025-11-26 11:08:29] 2025-11-26 16:07:53,453 | INFO     | . payload execution = 54977 s
[2025-11-26 11:08:29] 2025-11-26 16:07:53,453 | INFO     | . stage-out = 6 s
[2025-11-26 11:08:29] 2025-11-26 16:07:53,453 | INFO     | . log creation = 2 s
[2025-11-26 11:08:29] 2025-11-26 16:07:53,453 | INFO     | ..............................
[2025-11-26 11:08:29] 2025-11-26 16:07:53,568 | INFO     | 
[2025-11-26 11:08:29] 2025-11-26 16:07:53,575 | INFO     | job summary report
[2025-11-26 11:08:29] 2025-11-26 16:07:53,575 | INFO     | --------------------------------------------------
[2025-11-26 11:08:29] 2025-11-26 16:07:53,575 | INFO     | PanDA job id: 6896558436
[2025-11-26 11:08:29] 2025-11-26 16:07:53,575 | INFO     | task id: 47556161
[2025-11-26 11:08:29] 2025-11-26 16:07:53,575 | INFO     | errors: (none)
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | pilot state: finished 
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | transexitcode: 0
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | exeerrorcode: 0
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | exeerrordiag: 
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | exitcode: 0
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | exitmsg: OK
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | cpuconsumptiontime: 198117 s
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | nevents: 1000
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | neventsw: 0
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | pid: 648083
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | pgrp: 648083
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | corecount: 8
[2025-11-26 11:08:29] 2025-11-26 16:07:53,576 | INFO     | event service: False
[2025-11-26 11:08:29] 2025-11-26 16:07:53,577 | INFO     | sizes: {0: 2284091, 1: 2284290, 12: 2284580, 23: 2284580, 54994: 2335673, 55000: 2344667, 55001: 2344851, 55019: 2345097}
[2025-11-26 11:08:29] 2025-11-26 16:07:53,577 | INFO     | --------------------------------------------------
[2025-11-26 11:08:29] 2025-11-26 16:07:53,577 | INFO     | 
[2025-11-26 11:08:29] 2025-11-26 16:07:53,577 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 11:08:29] 2025-11-26 16:07:53,651 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,651 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,651 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,651 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,651 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,651 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,651 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,652 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,652 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,652 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,652 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,652 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,652 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,652 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,652 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,652 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,652 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,653 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:08:29] 2025-11-26 16:07:53,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,653 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:08:29] 2025-11-26 16:07:53,653 | INFO     | job 6896558436 has completed (purged errors)
[2025-11-26 11:08:29] 2025-11-26 16:07:53,653 | INFO     | overall cleanup function is called
[2025-11-26 11:08:29] 2025-11-26 16:07:54,526 | INFO     | PID=634392 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 11:08:29] 2025-11-26 16:07:54,527 | INFO     | .. there are 41 such processes running
[2025-11-26 11:08:29] 2025-11-26 16:07:54,705 | INFO     | --- collectZombieJob: --- 10, [648083]
[2025-11-26 11:08:29] 2025-11-26 16:07:54,705 | INFO     | zombie collector waiting for pid 648083
[2025-11-26 11:08:29] 2025-11-26 16:07:54,705 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:08:29] 2025-11-26 16:07:54,706 | INFO     | collected zombie processes
[2025-11-26 11:08:29] 2025-11-26 16:07:54,706 | INFO     | will attempt to kill all subprocesses of pid=648083
[2025-11-26 11:08:29] 2025-11-26 16:07:55,450 | INFO     | process IDs to be killed: [648083] (in reverse order)
[2025-11-26 11:08:29] 2025-11-26 16:07:55,714 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:08:29] 2025-11-26 16:07:55,714 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:08:29] 2025-11-26 16:07:55,735 | INFO     | did not find any defunct processes belonging to 648083
[2025-11-26 11:08:29] 2025-11-26 16:07:55,755 | INFO     | did not find any defunct processes belonging to 648083
[2025-11-26 11:08:29] 2025-11-26 16:07:55,756 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:08:29] 2025-11-26 16:07:55,756 | INFO     | ready for new job
[2025-11-26 11:08:29] 2025-11-26 16:07:55,756 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:08:29] 2025-11-26 16:07:55,763 | INFO     | ***************************************
[2025-11-26 11:08:29] 2025-11-26 16:07:55,763 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:08:29] 2025-11-26 16:07:55,763 | INFO     | ***************************************
[2025-11-26 11:08:29] 2025-11-26 16:07:55,763 | INFO     | 
[2025-11-26 11:08:29] 2025-11-26 16:07:55,767 | INFO     | architecture information:
[2025-11-26 11:08:29] 2025-11-26 16:07:55,767 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:08:29] 2025-11-26 16:07:55,798 | INFO     | cat /etc/os-release:
[2025-11-26 11:08:29] NAME="CentOS Linux"
[2025-11-26 11:08:29] VERSION="7 (Core)"
[2025-11-26 11:08:29] ID="centos"
[2025-11-26 11:08:29] ID_LIKE="rhel fedora"
[2025-11-26 11:08:29] VERSION_ID="7"
[2025-11-26 11:08:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:08:29] ANSI_COLOR="0;31"
[2025-11-26 11:08:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:08:29] HOME_URL="https://www.centos.org/"
[2025-11-26 11:08:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:08:29] 
[2025-11-26 11:08:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:08:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:08:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:08:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:08:29] 
[2025-11-26 11:08:29] 2025-11-26 16:07:55,798 | INFO     | ***************************************
[2025-11-26 11:08:29] 2025-11-26 16:07:56,302 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 11:08:29] 2025-11-26 16:07:56,327 | INFO     | sufficient remaining disk space (89829408768 B)
[2025-11-26 11:08:29] 2025-11-26 16:07:56,328 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:08:29] 2025-11-26 16:07:56,328 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:08:29] 2025-11-26 16:07:56,328 | INFO     | update_server=False
[2025-11-26 11:08:29] 2025-11-26 16:07:56,328 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:08:29] 2025-11-26 16:07:56,328 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:08:29] 2025-11-26 16:07:56,329 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:08:29] 2025-11-26 16:07:56,407 | INFO     | all payload control threads have been joined
[2025-11-26 11:08:29] 2025-11-26 16:07:57,054 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:08:29] 2025-11-26 16:07:57,055 | INFO     | aborting loop
[2025-11-26 11:08:29] 2025-11-26 16:07:57,334 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:57,382 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:08:29] 2025-11-26 16:07:57,415 | INFO     | [payload] control thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:57,441 | INFO     | all data control threads have been joined
[2025-11-26 11:08:29] 2025-11-26 16:07:57,707 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:57,839 | INFO     | all job control threads have been joined
[2025-11-26 11:08:29] 2025-11-26 16:07:58,059 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:58,078 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:58,082 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:58,228 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:58,336 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:58,446 | INFO     | [data] control thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:58,528 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:58,549 | INFO     | [job] validate thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:58,596 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:08:29] 2025-11-26 16:07:58,657 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:58,667 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:58,845 | INFO     | [job] control thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:07:59,602 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:08:00,337 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:08:29] 2025-11-26 16:08:00,661 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139806852392768)>', '<ExcThread(monitor, started 139806579332864)>']
[2025-11-26 11:08:29] 2025-11-26 16:08:05,688 | INFO     | all workflow threads have been joined
[2025-11-26 11:08:29] 2025-11-26 16:08:05,688 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:08:29] 2025-11-26 16:08:05,689 | INFO     | traces error code: 0
[2025-11-26 11:08:29] 2025-11-26 16:08:05,689 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:08:29] 2025-11-26 16:08:27,957 | INFO     | PID=634392 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 11:08:29] 2025-11-26 16:08:27,958 | INFO     | .. there are 41 such processes running
[2025-11-26 11:08:29] 2025-11-26 16:08:27,959 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:08:29] 2025-11-26 16:08:27,959 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:08:29] 2025-11-26 16:08:27,959 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:08:29] 2025-11-26 16:08:27,959 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:08:29] 2025-11-26 16:08:27,959 | INFO     | [monitor] control thread has ended
[2025-11-26 11:08:29] 2025-11-26 16:08:28,166 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:08:29] 2025-11-26 16:08:28,212 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:08:29] 2025-11-26 16:08:28,231 [wrapper] pilotpid: 634392
[2025-11-26 11:08:29] 2025-11-26 16:08:28,239 [wrapper] Pilot exit status: 0
[2025-11-26 11:08:29] 2025-11-26 16:08:28,312 [wrapper] pandaids: 6896558436
[2025-11-26 11:08:29] 2025-11-26 16:08:28,461 [wrapper] cleanup supervisor_pilot  234875 634393
[2025-11-26 11:08:29] 2025-11-26 16:08:28,466 [wrapper] Test setup, not cleaning
[2025-11-26 11:08:29] 2025-11-26 16:08:28,469 [wrapper] apfmon messages muted
[2025-11-26 11:08:29] 2025-11-26 16:08:28,472 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:08:29] 2025-11-26 16:08:28,527 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:08:29]  *** Error codes and diagnostics ***
[2025-11-26 11:08:29]     "exeErrorCode": 0,
[2025-11-26 11:08:29]     "exeErrorDiag": "",
[2025-11-26 11:08:29]     "pilotErrorCode": 0,
[2025-11-26 11:08:29]     "pilotErrorDiag": "",
[2025-11-26 11:08:29]  *** Listing of results directory ***
[2025-11-26 11:08:29] total 1320356
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 11:08:29] -rwx------. 1 boincer umatlas     36292 Nov 25 00:05 runpilot2-wrapper.sh
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:05 queuedata.json
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:08:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:49 run_atlas
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:49 job.xml
[2025-11-26 11:08:29] -rw-r--r--. 2 boincer umatlas 409407189 Nov 25 19:49 EVNT.47483658._002088.pool.root.1
[2025-11-26 11:08:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:49 start_atlas.sh
[2025-11-26 11:08:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:49 shared
[2025-11-26 11:08:29] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 19:49 input.tar.gz
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:49 boinc_lockfile
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 19:49 pandaJob.out
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas        57 Nov 25 19:49 setup.sh.local
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas    991877 Nov 25 19:50 agis_schedconf.cvmfs.json
[2025-11-26 11:08:29] drwx------. 5 boincer umatlas      4096 Nov 25 19:50 pilot3
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas       532 Nov 26 11:00 boinc_task_state.xml
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas      6903 Nov 26 11:01 init_data.xml
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas 920474424 Nov 26 11:06 HITS.47556161._000717.pool.root.1
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas      1057 Nov 26 11:07 memory_monitor_summary.json
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas   1516240 Nov 26 11:07 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas   2058910 Nov 26 11:07 log.47556161._000717.job.log.tgz.1
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas      8595 Nov 26 11:07 heartbeat.json
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas        29 Nov 26 11:08 wrapper_checkpoint.txt
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 11:08 boinc_mmap_file
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas        95 Nov 26 11:08 pilot_heartbeat.json
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas       822 Nov 26 11:08 pilotlog.txt
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas   7060990 Nov 26 11:08 log.47556161._000717.job.log.1
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas       353 Nov 26 11:08 output.list
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas       620 Nov 26 11:08 runtime_log
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas   9144320 Nov 26 11:08 result.tar.gz
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 11:08 runtime_log.err
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas       664 Nov 26 11:08 iEIODmcQ0h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsKJKDmZuXbqm.diag
[2025-11-26 11:08:29] -rw-r--r--. 1 boincer umatlas     21402 Nov 26 11:08 stderr.txt
[2025-11-26 11:08:29] HITS file was successfully produced:
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas 920474424 Nov 26 11:06 shared/HITS.pool.root.1
[2025-11-26 11:08:29]  *** Contents of shared directory: ***
[2025-11-26 11:08:29] total 1308252
[2025-11-26 11:08:29] -rw-r--r--. 2 boincer umatlas 409407189 Nov 25 19:49 ATLAS.root_0
[2025-11-26 11:08:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:49 start_atlas.sh
[2025-11-26 11:08:29] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 19:49 input.tar.gz
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas 920474424 Nov 26 11:06 HITS.pool.root.1
[2025-11-26 11:08:29] -rw-------. 1 boincer umatlas   9144320 Nov 26 11:08 result.tar.gz
11:08:30 (629308): run_atlas exited; CPU time 198684.911630
11:08:30 (629308): called boinc_finish(0)

</stderr_txt>
]]>

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