Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:09 (359284): wrapper (7.7.26015): starting
00:00:09 (359284): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:00:09] Arguments: --nthreads 9
[2025-11-26 00:00:09] Threads: 9
[2025-11-26 00:00:09] Checking for CVMFS
[2025-11-26 00:00:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:00:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:00:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:00:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:00:12] 2.13.3.0 11600 29554 335756 153309 1 166 25247067 32935937 22027 16776704 0 118391530 99.593 120356159 38779 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:00:12] CVMFS is ok
[2025-11-26 00:00:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:00:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:00:12] Further information can be found at the LHC@home message board.
[2025-11-26 00:00:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:00:12] Checking for apptainer binary...
[2025-11-26 00:00:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:00:12] Running /usr/bin/apptainer --version
[2025-11-26 00:00:13] apptainer version 1.4.4-1.el9
[2025-11-26 00:00:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:00:13] c6-2-29-4.aglt2.org
[2025-11-26 00:00:13] apptainer works
[2025-11-26 00:00:13] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:00:13] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:00:13] Starting ATLAS job with PandaID=6896577519
[2025-11-26 00:00:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:48:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:48:32] 2025-11-27 00:34:33,395 | INFO     | monitor loop #4399: job 0:6896577519 is in state 'finished'
[2025-11-26 20:48:32] 2025-11-27 00:34:33,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:48:32] 2025-11-27 00:34:33,543 | INFO     | time since job start (70371s) is within the limit (172800.0s)
[2025-11-26 20:48:32] 2025-11-27 00:34:35,568 | INFO     | time since job start (70373s) is within the limit (172800.0s)
[2025-11-26 20:48:32] 2025-11-27 00:34:35,918 | INFO     | monitor loop #4400: job 0:6896577519 is in state 'finished'
[2025-11-26 20:48:32] 2025-11-27 00:34:35,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:48:32] 2025-11-27 00:34:37,576 | INFO     | time since job start (70375s) is within the limit (172800.0s)
[2025-11-26 20:48:32] 2025-11-27 00:34:38,425 | INFO     | monitor loop #4401: job 0:6896577519 is in state 'finished'
[2025-11-26 20:48:32] 2025-11-27 00:34:38,426 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:48:32] 2025-11-27 00:34:40,507 | INFO     | PID=363930 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 20:48:32] 2025-11-27 00:34:40,508 | INFO     | .. there are 32 such processes running
[2025-11-26 20:48:32] 2025-11-27 00:34:40,979 | INFO     | monitor loop #4402: job 0:6896577519 is in state 'finished'
[2025-11-26 20:48:32] 2025-11-27 00:34:40,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:48:32] 2025-11-27 00:34:41,509 | INFO     | time since job start (70379s) is within the limit (172800.0s)
[2025-11-26 20:48:32] 2025-11-27 00:34:42,932 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:48:32] 2025-11-27 00:34:42,955 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2825.181857142856
[2025-11-26 20:48:32] 2025-11-27 00:34:42,967 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896577519/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:48:32] 2025-11-27 00:34:42,969 | INFO     | extracted standard info from prmon json
[2025-11-26 20:48:32] 2025-11-27 00:34:42,969 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:48:32] 2025-11-27 00:34:42,970 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:48:32] 2025-11-27 00:34:42,995 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:48:32] 2025-11-27 00:34:42,998 | INFO     | sum of square deviations: 472796754960.8255
[2025-11-26 20:48:32] 2025-11-27 00:34:43,098 | INFO     | sum of deviations: 3689093460731.117
[2025-11-26 20:48:32] 2025-11-27 00:34:43,098 | INFO     | mean x: 1764168554.9157255
[2025-11-26 20:48:32] 2025-11-27 00:34:43,098 | INFO     | mean y: 2990559.4960903563
[2025-11-26 20:48:32] 2025-11-27 00:34:43,098 | INFO     | intersect: -13762295710.512926
[2025-11-26 20:48:32] 2025-11-27 00:34:43,100 | INFO     | chi2: 22.511314444044245
[2025-11-26 20:48:32] 2025-11-27 00:34:43,102 | INFO     | sum of square deviations: 466662107341.7425
[2025-11-26 20:48:32] 2025-11-27 00:34:43,187 | INFO     | sum of deviations: 4110795234978.0654
[2025-11-26 20:48:32] 2025-11-27 00:34:43,231 | INFO     | mean x: 1764168402.423211
[2025-11-26 20:48:32] 2025-11-27 00:34:43,232 | INFO     | mean y: 3001038.4040139616
[2025-11-26 20:48:32] 2025-11-27 00:34:43,232 | INFO     | intersect: -15537440210.813105
[2025-11-26 20:48:32] 2025-11-27 00:34:43,234 | INFO     | chi2: 18.889169315286225
[2025-11-26 20:48:32] 2025-11-27 00:34:43,234 | INFO     | current chi2=18.889169315286225 (change=16.090331543106856 %)
[2025-11-26 20:48:32] 2025-11-27 00:34:43,234 | INFO     | right removable region: 1145
[2025-11-26 20:48:32] 2025-11-27 00:34:43,277 | INFO     | sum of square deviations: 466660972437.58765
[2025-11-26 20:48:32] 2025-11-27 00:34:43,537 | INFO     | monitor loop #4403: job 0:6896577519 is in state 'finished'
[2025-11-26 20:48:32] 2025-11-27 00:34:43,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:48:32] 2025-11-27 00:34:43,538 | INFO     | time since job start (70381s) is within the limit (172800.0s)
[2025-11-26 20:48:32] 2025-11-27 00:34:43,540 | INFO     | sum of deviations: 3208444612419.2153
[2025-11-26 20:48:32] 2025-11-27 00:34:43,541 | INFO     | mean x: 1764168707.4223385
[2025-11-26 20:48:32] 2025-11-27 00:34:43,541 | INFO     | mean y: 3002504.030541012
[2025-11-26 20:48:32] 2025-11-27 00:34:43,541 | INFO     | intersect: -12126226034.54151
[2025-11-26 20:48:32] 2025-11-27 00:34:43,578 | INFO     | chi2: 18.316878339577162
[2025-11-26 20:48:32] 2025-11-27 00:34:43,587 | INFO     | current chi2=18.316878339577162 (change=18.632568590755007 %)
[2025-11-26 20:48:32] 2025-11-27 00:34:43,587 | INFO     | left removable region: 10
[2025-11-26 20:48:32] 2025-11-27 00:34:43,621 | INFO     | sum of square deviations: 453350787557.9257
[2025-11-26 20:48:32] 2025-11-27 00:34:43,847 | INFO     | sum of deviations: 3258192607196.695
[2025-11-26 20:48:32] 2025-11-27 00:34:43,847 | INFO     | mean x: 1764168676.940088
[2025-11-26 20:48:32] 2025-11-27 00:34:43,847 | INFO     | mean y: 3026251.4220264317
[2025-11-26 20:48:32] 2025-11-27 00:34:43,847 | INFO     | intersect: -12675900307.89212
[2025-11-26 20:48:32] 2025-11-27 00:34:43,849 | INFO     | chi2: 10.561423591632547
[2025-11-26 20:48:32] 2025-11-27 00:34:43,849 | INFO     | current memory leak: 7.19 B/s (using 1135 data points, chi2=10.56)
[2025-11-26 20:48:32] 2025-11-27 00:34:43,850 | INFO     | could have reported an average CPU frequency of 2928 MHz (42 samples)
[2025-11-26 20:48:32] 2025-11-27 00:34:43,851 | INFO     | ..............................
[2025-11-26 20:48:32] 2025-11-27 00:34:43,851 | INFO     | . Timing measurements:
[2025-11-26 20:48:32] 2025-11-27 00:34:43,851 | INFO     | . get job = 0 s
[2025-11-26 20:48:32] 2025-11-27 00:34:43,859 | INFO     | . initial setup = 9 s
[2025-11-26 20:48:32] 2025-11-27 00:34:43,859 | INFO     | . payload setup = 51 s
[2025-11-26 20:48:32] 2025-11-27 00:34:43,859 | INFO     | . stage-in = 0 s
[2025-11-26 20:48:32] 2025-11-27 00:34:43,859 | INFO     | . payload execution = 70192 s
[2025-11-26 20:48:32] 2025-11-27 00:34:43,859 | INFO     | . stage-out = 7 s
[2025-11-26 20:48:32] 2025-11-27 00:34:43,859 | INFO     | . log creation = 1 s
[2025-11-26 20:48:32] 2025-11-27 00:34:43,860 | INFO     | ..............................
[2025-11-26 20:48:32] 2025-11-27 00:34:44,130 | INFO     | 
[2025-11-26 20:48:32] 2025-11-27 00:34:44,130 | INFO     | job summary report
[2025-11-26 20:48:32] 2025-11-27 00:34:44,130 | INFO     | --------------------------------------------------
[2025-11-26 20:48:32] 2025-11-27 00:34:44,130 | INFO     | PanDA job id: 6896577519
[2025-11-26 20:48:32] 2025-11-27 00:34:44,130 | INFO     | task id: 47556173
[2025-11-26 20:48:32] 2025-11-27 00:34:44,130 | INFO     | errors: (none)
[2025-11-26 20:48:32] 2025-11-27 00:34:44,130 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:48:32] 2025-11-27 00:34:44,130 | INFO     | pilot state: finished 
[2025-11-26 20:48:32] 2025-11-27 00:34:44,130 | INFO     | transexitcode: 0
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | exeerrorcode: 0
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | exeerrordiag: 
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | exitcode: 0
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | exitmsg: OK
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | cpuconsumptiontime: 245567 s
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | nevents: 1000
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | neventsw: 0
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | pid: 375559
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | pgrp: 375559
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | corecount: 9
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | event service: False
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | sizes: {0: 2284142, 1: 2284170, 2: 2284341, 13: 2284369, 24: 2284425, 35: 2284453, 39: 2284871, 46: 2284899, 70248: 2343199, 70256: 2352193, 70259: 2352249, 70299:
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | --------------------------------------------------
[2025-11-26 20:48:32] 2025-11-27 00:34:44,131 | INFO     | 
[2025-11-26 20:48:32] 2025-11-27 00:34:44,132 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 20:48:32] 2025-11-27 00:34:44,185 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,186 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,186 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,186 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,186 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,186 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,186 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,187 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,187 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:48:32] 2025-11-27 00:34:44,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,187 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:48:32] 2025-11-27 00:34:44,187 | INFO     | job 6896577519 has completed (purged errors)
[2025-11-26 20:48:32] 2025-11-27 00:34:44,187 | INFO     | overall cleanup function is called
[2025-11-26 20:48:32] 2025-11-27 00:34:45,218 | INFO     | --- collectZombieJob: --- 10, [375559]
[2025-11-26 20:48:32] 2025-11-27 00:34:45,218 | INFO     | zombie collector waiting for pid 375559
[2025-11-26 20:48:32] 2025-11-27 00:34:45,218 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:48:32] 2025-11-27 00:34:45,218 | INFO     | collected zombie processes
[2025-11-26 20:48:32] 2025-11-27 00:34:45,218 | INFO     | will attempt to kill all subprocesses of pid=375559
[2025-11-26 20:48:32] 2025-11-27 00:34:46,574 | INFO     | process IDs to be killed: [375559] (in reverse order)
[2025-11-26 20:48:32] 2025-11-27 00:34:47,280 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:48:32] 2025-11-27 00:34:47,280 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:48:32] 2025-11-27 00:34:47,323 | INFO     | did not find any defunct processes belonging to 375559
[2025-11-26 20:48:32] 2025-11-27 00:34:47,361 | INFO     | did not find any defunct processes belonging to 375559
[2025-11-26 20:48:32] 2025-11-27 00:34:47,362 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:48:32] 2025-11-27 00:34:47,362 | INFO     | ready for new job
[2025-11-26 20:48:32] 2025-11-27 00:34:47,363 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:48:32] 2025-11-27 00:34:47,369 | INFO     | ***************************************
[2025-11-26 20:48:32] 2025-11-27 00:34:47,369 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:48:32] 2025-11-27 00:34:47,369 | INFO     | ***************************************
[2025-11-26 20:48:32] 2025-11-27 00:34:47,369 | INFO     | 
[2025-11-26 20:48:32] 2025-11-27 00:34:47,372 | INFO     | architecture information:
[2025-11-26 20:48:32] 2025-11-27 00:34:47,373 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:48:32] 2025-11-27 00:34:47,443 | INFO     | cat /etc/os-release:
[2025-11-26 20:48:32] NAME="CentOS Linux"
[2025-11-26 20:48:32] VERSION="7 (Core)"
[2025-11-26 20:48:32] ID="centos"
[2025-11-26 20:48:32] ID_LIKE="rhel fedora"
[2025-11-26 20:48:32] VERSION_ID="7"
[2025-11-26 20:48:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:48:32] ANSI_COLOR="0;31"
[2025-11-26 20:48:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:48:32] HOME_URL="https://www.centos.org/"
[2025-11-26 20:48:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:48:32] 
[2025-11-26 20:48:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:48:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:48:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:48:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:48:32] 
[2025-11-26 20:48:32] 2025-11-27 00:34:47,444 | INFO     | ***************************************
[2025-11-26 20:48:32] 2025-11-27 00:34:47,947 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 20:48:32] 2025-11-27 00:34:48,018 | INFO     | sufficient remaining disk space (70708625408 B)
[2025-11-26 20:48:32] 2025-11-27 00:34:48,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:48:32] 2025-11-27 00:34:48,019 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:48:32] 2025-11-27 00:34:48,019 | INFO     | update_server=False
[2025-11-26 20:48:32] 2025-11-27 00:34:48,019 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:48:32] 2025-11-27 00:34:48,019 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:48:32] 2025-11-27 00:34:48,020 | INFO     | aborting loop
[2025-11-26 20:48:32] 2025-11-27 00:34:48,020 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:48:32] 2025-11-27 00:34:48,105 | INFO     | all data control threads have been joined
[2025-11-26 20:48:32] 2025-11-27 00:34:48,912 | INFO     | all payload control threads have been joined
[2025-11-26 20:48:32] 2025-11-27 00:34:49,025 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:49,026 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:49,111 | INFO     | [data] control thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:49,169 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:48:32] 2025-11-27 00:34:49,307 | INFO     | all job control threads have been joined
[2025-11-26 20:48:32] 2025-11-27 00:34:49,797 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:49,918 | INFO     | [payload] control thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:50,027 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:50,175 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:50,234 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:50,252 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:50,313 | INFO     | [job] control thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:50,452 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:50,459 | INFO     | [job] validate thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:50,464 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:50,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:50,543 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:34:50,902 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:48:32] 2025-11-27 00:34:54,916 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:48:32] 2025-11-27 00:35:17,620 | INFO     | PID=363930 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 20:48:32] 2025-11-27 00:35:17,620 | INFO     | .. there are 32 such processes running
[2025-11-26 20:48:32] 2025-11-27 00:35:17,621 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:48:32] 2025-11-27 00:35:17,621 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:48:32] 2025-11-27 00:35:17,621 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:48:32] 2025-11-27 00:35:46,232 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:48:32] 2025-11-27 00:35:47,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139903807231808)>', '<ExcThread(monitor, started 139903157384960)>']
[2025-11-26 20:48:32] 2025-11-27 00:35:47,996 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:48:32] 2025-11-27 00:35:47,996 | INFO     | [monitor] control thread has ended
[2025-11-26 20:48:32] 2025-11-27 00:35:52,103 | INFO     | all workflow threads have been joined
[2025-11-26 20:48:32] 2025-11-27 00:35:52,104 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:48:32] 2025-11-27 00:35:52,104 | INFO     | traces error code: 0
[2025-11-26 20:48:32] 2025-11-27 00:35:52,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:48:32] 2025-11-27 00:35:52,723 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:48:32] 2025-11-27 00:35:52,736 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:48:32] 2025-11-27 00:35:52,742 [wrapper] pilotpid: 363930
[2025-11-26 20:48:32] 2025-11-27 00:35:52,747 [wrapper] Pilot exit status: 0
[2025-11-26 20:48:32] 2025-11-27 00:35:52,868 [wrapper] pandaids: 6896577519
[2025-11-26 20:48:32] 2025-11-27 00:35:52,996 [wrapper] cleanup supervisor_pilot  481245 363931
[2025-11-26 20:48:32] 2025-11-27 00:35:53,008 [wrapper] Test setup, not cleaning
[2025-11-26 20:48:32] 2025-11-27 00:35:53,025 [wrapper] apfmon messages muted
[2025-11-26 20:48:32] 2025-11-27 00:35:53,050 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:48:32] 2025-11-27 00:35:53,071 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:48:32]  *** Error codes and diagnostics ***
[2025-11-26 20:48:32]     "exeErrorCode": 0,
[2025-11-26 20:48:32]     "exeErrorDiag": "",
[2025-11-26 20:48:32]     "pilotErrorCode": 0,
[2025-11-26 20:48:32]     "pilotErrorDiag": "",
[2025-11-26 20:48:32]  *** Listing of results directory ***
[2025-11-26 20:48:32] total 1324992
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:11 queuedata.json
[2025-11-26 20:48:32] -rwx------. 1 boincer umatlas     36292 Nov 25 00:12 runpilot2-wrapper.sh
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:48:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:00 run_atlas
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:00 job.xml
[2025-11-26 20:48:32] -rw-r--r--. 2 boincer umatlas 410291824 Nov 26 00:00 EVNT.47483658._003064.pool.root.1
[2025-11-26 20:48:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-26 20:48:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:00 shared
[2025-11-26 20:48:32] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:00 input.tar.gz
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:00 boinc_lockfile
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:00 pandaJob.out
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas        57 Nov 26 00:00 setup.sh.local
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas    991877 Nov 26 00:01 agis_schedconf.cvmfs.json
[2025-11-26 20:48:32] drwx------. 5 boincer umatlas      4096 Nov 26 00:01 pilot3
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:01 boinc_task_state.xml
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas 919492764 Nov 26 19:32 HITS.47556173._000466.pool.root.1
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas      1058 Nov 26 19:33 memory_monitor_summary.json
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:33 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas   2401571 Nov 26 19:33 log.47556173._000466.job.log.tgz.1
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas      8625 Nov 26 19:34 heartbeat.json
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas        95 Nov 26 19:35 pilot_heartbeat.json
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas      4823 Nov 26 19:35 pilotlog.txt
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas   9141056 Nov 26 19:35 log.47556173._000466.job.log.1
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas       353 Nov 26 19:35 output.list
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:35 runtime_log
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas  11560960 Nov 26 19:35 result.tar.gz
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 19:35 runtime_log.err
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas       661 Nov 26 19:35 B7LMDmhW0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw8LKDmqpbPYn.diag
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas      6845 Nov 26 20:48 init_data.xml
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:48 boinc_mmap_file
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:48 wrapper_checkpoint.txt
[2025-11-26 20:48:32] -rw-r--r--. 1 boincer umatlas     21783 Nov 26 20:48 stderr.txt
[2025-11-26 20:48:32] HITS file was successfully produced:
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas 919492764 Nov 26 19:32 shared/HITS.pool.root.1
[2025-11-26 20:48:32]  *** Contents of shared directory: ***
[2025-11-26 20:48:32] total 1310516
[2025-11-26 20:48:32] -rw-r--r--. 2 boincer umatlas 410291824 Nov 26 00:00 ATLAS.root_0
[2025-11-26 20:48:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-26 20:48:32] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:00 input.tar.gz
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas 919492764 Nov 26 19:32 HITS.pool.root.1
[2025-11-26 20:48:32] -rw-------. 1 boincer umatlas  11560960 Nov 26 19:35 result.tar.gz
20:48:34 (359284): run_atlas exited; CPU time 247332.078702
20:48:34 (359284): called boinc_finish(0)

</stderr_txt>
]]>

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