Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:35:14 (8486): wrapper (7.7.26015): starting
19:35:14 (8486): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 19:35:14] Arguments: --nthreads 12
[2025-11-25 19:35:14] Threads: 12
[2025-11-25 19:35:14] Checking for CVMFS
[2025-11-25 19:35:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:35:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:35:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:35:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:35:15] 2.11.2.0 3009 72235 94784 153303 0 81 16250781 20275201 1 130560 0 29703773 99.913 3786232 34641 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 19:35:15] CVMFS is ok
[2025-11-25 19:35:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:35:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:35:15] Further information can be found at the LHC@home message board.
[2025-11-25 19:35:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:35:15] Checking for apptainer binary...
[2025-11-25 19:35:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:35:15] Running /usr/bin/apptainer --version
[2025-11-25 19:35:15] apptainer version 1.3.2-1.el7
[2025-11-25 19:35:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:35:16] c-115-42.aglt2.org
[2025-11-25 19:35:16] apptainer works
[2025-11-25 19:35:16] Set ATHENA_PROC_NUMBER=12
[2025-11-25 19:35:16] Set ATHENA_CORE_NUMBER=12
[2025-11-25 19:35:16] Starting ATLAS job with PandaID=6896577570
[2025-11-25 19:35:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:02:14]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:02:15] 2025-11-26 07:01:43,767 | INFO     | time since job start (23172s) is within the limit (172800.0s)
[2025-11-26 02:02:15] 2025-11-26 07:01:44,901 | INFO     | monitor loop #1733: job 0:6896577570 is in state 'finished'
[2025-11-26 02:02:15] 2025-11-26 07:01:44,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,383 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 02:02:15] 2025-11-26 07:01:45,386 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-11-26 02:02:15] 2025-11-26 07:01:45,388 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896577570/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,389 | INFO     | extracted standard info from prmon json
[2025-11-26 02:02:15] 2025-11-26 07:01:45,389 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:02:15] 2025-11-26 07:01:45,389 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:02:15] 2025-11-26 07:01:45,396 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:02:15] 2025-11-26 07:01:45,397 | INFO     | sum of square deviations: 17014559143.986933
[2025-11-26 02:02:15] 2025-11-26 07:01:45,400 | INFO     | sum of deviations: 231198076220.17105
[2025-11-26 02:02:15] 2025-11-26 07:01:45,400 | INFO     | mean x: 1764128919.7236843
[2025-11-26 02:02:15] 2025-11-26 07:01:45,400 | INFO     | mean y: 4046250.792105263
[2025-11-26 02:02:15] 2025-11-26 07:01:45,400 | INFO     | intersect: -23967377809.796978
[2025-11-26 02:02:15] 2025-11-26 07:01:45,401 | INFO     | chi2: 6.76087092308492
[2025-11-26 02:02:15] 2025-11-26 07:01:45,401 | INFO     | sum of square deviations: 16351744733.733412
[2025-11-26 02:02:15] 2025-11-26 07:01:45,404 | INFO     | sum of deviations: 422215700439.69403
[2025-11-26 02:02:15] 2025-11-26 07:01:45,404 | INFO     | mean x: 1764128767.2266667
[2025-11-26 02:02:15] 2025-11-26 07:01:45,404 | INFO     | mean y: 4090164.250666667
[2025-11-26 02:02:15] 2025-11-26 07:01:45,404 | INFO     | intersect: -45547187405.77041
[2025-11-26 02:02:15] 2025-11-26 07:01:45,405 | INFO     | chi2: 3.1374134796278224
[2025-11-26 02:02:15] 2025-11-26 07:01:45,405 | INFO     | current chi2=3.1374134796278224 (change=53.59453663114381 %)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,405 | INFO     | sum of square deviations: 15706349879.429764
[2025-11-26 02:02:15] 2025-11-26 07:01:45,408 | INFO     | sum of deviations: 478747267877.4137
[2025-11-26 02:02:15] 2025-11-26 07:01:45,408 | INFO     | mean x: 1764128614.727027
[2025-11-26 02:02:15] 2025-11-26 07:01:45,408 | INFO     | mean y: 4103421.5486486484
[2025-11-26 02:02:15] 2025-11-26 07:01:45,408 | INFO     | intersect: -53768527455.02736
[2025-11-26 02:02:15] 2025-11-26 07:01:45,409 | INFO     | chi2: 2.45239385512508
[2025-11-26 02:02:15] 2025-11-26 07:01:45,409 | INFO     | current chi2=2.45239385512508 (change=21.83389690108692 %)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,409 | INFO     | right removable region: 369
[2025-11-26 02:02:15] 2025-11-26 07:01:45,409 | INFO     | sum of square deviations: 16351715941.184008
[2025-11-26 02:02:15] 2025-11-26 07:01:45,412 | INFO     | sum of deviations: 89859056870.28021
[2025-11-26 02:02:15] 2025-11-26 07:01:45,412 | INFO     | mean x: 1764129072.224
[2025-11-26 02:02:15] 2025-11-26 07:01:45,412 | INFO     | mean y: 4078637.4133333336
[2025-11-26 02:02:15] 2025-11-26 07:01:45,412 | INFO     | intersect: -9690498689.986877
[2025-11-26 02:02:15] 2025-11-26 07:01:45,413 | INFO     | chi2: 4.4552943739717845
[2025-11-26 02:02:15] 2025-11-26 07:01:45,413 | INFO     | current chi2=4.4552943739717845 (change=34.101768475430724 %)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,413 | INFO     | sum of square deviations: 15706314925.881062
[2025-11-26 02:02:15] 2025-11-26 07:01:45,416 | INFO     | sum of deviations: 60745268900.794624
[2025-11-26 02:02:15] 2025-11-26 07:01:45,416 | INFO     | mean x: 1764129224.7243242
[2025-11-26 02:02:15] 2025-11-26 07:01:45,416 | INFO     | mean y: 4085503.4783783783
[2025-11-26 02:02:15] 2025-11-26 07:01:45,416 | INFO     | intersect: -6818807367.149455
[2025-11-26 02:02:15] 2025-11-26 07:01:45,417 | INFO     | chi2: 4.409167855281561
[2025-11-26 02:02:15] 2025-11-26 07:01:45,417 | INFO     | current chi2=4.409167855281561 (change=1.0353192139154361 %)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,417 | INFO     | left removable region: 20
[2025-11-26 02:02:15] 2025-11-26 07:01:45,418 | INFO     | sum of square deviations: 13180867862.2006
[2025-11-26 02:02:15] 2025-11-26 07:01:45,420 | INFO     | sum of deviations: 270211964673.54437
[2025-11-26 02:02:15] 2025-11-26 07:01:45,420 | INFO     | mean x: 1764129194.2320917
[2025-11-26 02:02:15] 2025-11-26 07:01:45,420 | INFO     | mean y: 4153743.4871060173
[2025-11-26 02:02:15] 2025-11-26 07:01:45,420 | INFO     | intersect: -36161053319.883385
[2025-11-26 02:02:15] 2025-11-26 07:01:45,421 | INFO     | chi2: 0.018587814099442563
[2025-11-26 02:02:15] 2025-11-26 07:01:45,421 | INFO     | current memory leak: 20.50 B/s (using 349 data points, chi2=0.02)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,421 | INFO     | could have reported an average CPU frequency of 2575 MHz (16 samples)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,421 | INFO     | ..............................
[2025-11-26 02:02:15] 2025-11-26 07:01:45,421 | INFO     | . Timing measurements:
[2025-11-26 02:02:15] 2025-11-26 07:01:45,422 | INFO     | . get job = 0 s
[2025-11-26 02:02:15] 2025-11-26 07:01:45,422 | INFO     | . initial setup = 2 s
[2025-11-26 02:02:15] 2025-11-26 07:01:45,422 | INFO     | . payload setup = 7 s
[2025-11-26 02:02:15] 2025-11-26 07:01:45,422 | INFO     | . stage-in = 0 s
[2025-11-26 02:02:15] 2025-11-26 07:01:45,422 | INFO     | . payload execution = 23133 s
[2025-11-26 02:02:15] 2025-11-26 07:01:45,422 | INFO     | . stage-out = 3 s
[2025-11-26 02:02:15] 2025-11-26 07:01:45,422 | INFO     | . log creation = 0 s
[2025-11-26 02:02:15] 2025-11-26 07:01:45,422 | INFO     | ..............................
[2025-11-26 02:02:15] 2025-11-26 07:01:45,772 | INFO     | time since job start (23174s) is within the limit (172800.0s)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,957 | INFO     | 
[2025-11-26 02:02:15] 2025-11-26 07:01:45,957 | INFO     | job summary report
[2025-11-26 02:02:15] 2025-11-26 07:01:45,957 | INFO     | --------------------------------------------------
[2025-11-26 02:02:15] 2025-11-26 07:01:45,957 | INFO     | PanDA job id: 6896577570
[2025-11-26 02:02:15] 2025-11-26 07:01:45,957 | INFO     | task id: 47556161
[2025-11-26 02:02:15] 2025-11-26 07:01:45,957 | INFO     | errors: (none)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,958 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:02:15] 2025-11-26 07:01:45,958 | INFO     | pilot state: finished 
[2025-11-26 02:02:15] 2025-11-26 07:01:45,958 | INFO     | transexitcode: 0
[2025-11-26 02:02:15] 2025-11-26 07:01:45,958 | INFO     | exeerrorcode: 0
[2025-11-26 02:02:15] 2025-11-26 07:01:45,958 | INFO     | exeerrordiag: 
[2025-11-26 02:02:15] 2025-11-26 07:01:45,958 | INFO     | exitcode: 0
[2025-11-26 02:02:15] 2025-11-26 07:01:45,959 | INFO     | exitmsg: OK
[2025-11-26 02:02:15] 2025-11-26 07:01:45,959 | INFO     | cpuconsumptiontime: 267405 s
[2025-11-26 02:02:15] 2025-11-26 07:01:45,959 | INFO     | nevents: 1000
[2025-11-26 02:02:15] 2025-11-26 07:01:45,959 | INFO     | neventsw: 0
[2025-11-26 02:02:15] 2025-11-26 07:01:45,959 | INFO     | pid: 18627
[2025-11-26 02:02:15] 2025-11-26 07:01:45,959 | INFO     | pgrp: 18627
[2025-11-26 02:02:15] 2025-11-26 07:01:45,960 | INFO     | corecount: 12
[2025-11-26 02:02:15] 2025-11-26 07:01:45,960 | INFO     | event service: False
[2025-11-26 02:02:15] 2025-11-26 07:01:45,960 | INFO     | sizes: {0: 2284256, 5: 2284518, 11: 2284574, 23144: 2320419, 23148: 2329413, 23150: 2329469, 23158: 2329843}
[2025-11-26 02:02:15] 2025-11-26 07:01:45,960 | INFO     | --------------------------------------------------
[2025-11-26 02:02:15] 2025-11-26 07:01:45,960 | INFO     | 
[2025-11-26 02:02:15] 2025-11-26 07:01:45,960 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 02:02:15] 2025-11-26 07:01:45,985 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,986 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,986 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,986 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,986 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,986 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,987 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,987 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,987 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,987 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,987 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,987 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,988 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,988 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,988 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,988 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,988 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,988 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,989 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,989 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:02:15] 2025-11-26 07:01:45,989 | INFO     | job 6896577570 has completed (purged errors)
[2025-11-26 02:02:15] 2025-11-26 07:01:45,989 | INFO     | overall cleanup function is called
[2025-11-26 02:02:15] 2025-11-26 07:01:47,005 | INFO     | --- collectZombieJob: --- 10, [18627]
[2025-11-26 02:02:15] 2025-11-26 07:01:47,005 | INFO     | zombie collector waiting for pid 18627
[2025-11-26 02:02:15] 2025-11-26 07:01:47,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:02:15] 2025-11-26 07:01:47,012 | INFO     | collected zombie processes
[2025-11-26 02:02:15] 2025-11-26 07:01:47,013 | INFO     | will attempt to kill all subprocesses of pid=18627
[2025-11-26 02:02:15] 2025-11-26 07:01:47,100 | INFO     | process IDs to be killed: [18627] (in reverse order)
[2025-11-26 02:02:15] 2025-11-26 07:01:47,150 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:02:15] 2025-11-26 07:01:47,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:02:15] 2025-11-26 07:01:47,154 | INFO     | did not find any defunct processes belonging to 18627
[2025-11-26 02:02:15] 2025-11-26 07:01:47,157 | INFO     | did not find any defunct processes belonging to 18627
[2025-11-26 02:02:15] 2025-11-26 07:01:47,159 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:02:15] 2025-11-26 07:01:47,159 | INFO     | ready for new job
[2025-11-26 02:02:15] 2025-11-26 07:01:47,159 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:02:15] 2025-11-26 07:01:47,161 | INFO     | ***************************************
[2025-11-26 02:02:15] 2025-11-26 07:01:47,161 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:02:15] 2025-11-26 07:01:47,161 | INFO     | ***************************************
[2025-11-26 02:02:15] 2025-11-26 07:01:47,161 | INFO     | 
[2025-11-26 02:02:15] 2025-11-26 07:01:47,161 | INFO     | architecture information:
[2025-11-26 02:02:15] 2025-11-26 07:01:47,162 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:02:15] 2025-11-26 07:01:47,178 | INFO     | cat /etc/os-release:
[2025-11-26 02:02:15] NAME="CentOS Linux"
[2025-11-26 02:02:15] VERSION="7 (Core)"
[2025-11-26 02:02:15] ID="centos"
[2025-11-26 02:02:15] ID_LIKE="rhel fedora"
[2025-11-26 02:02:15] VERSION_ID="7"
[2025-11-26 02:02:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:02:15] ANSI_COLOR="0;31"
[2025-11-26 02:02:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:02:15] HOME_URL="https://www.centos.org/"
[2025-11-26 02:02:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:02:15] 
[2025-11-26 02:02:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:02:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:02:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:02:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:02:15] 
[2025-11-26 02:02:15] 2025-11-26 07:01:47,178 | INFO     | ***************************************
[2025-11-26 02:02:15] 2025-11-26 07:01:47,680 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 02:02:15] 2025-11-26 07:01:47,696 | INFO     | sufficient remaining disk space (17476616192 B)
[2025-11-26 02:02:15] 2025-11-26 07:01:47,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:02:15] 2025-11-26 07:01:47,697 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:02:15] 2025-11-26 07:01:47,697 | INFO     | update_server=False
[2025-11-26 02:02:15] 2025-11-26 07:01:47,697 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:02:15] 2025-11-26 07:01:47,698 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 02:02:15] 2025-11-26 07:01:47,698 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:02:15] 2025-11-26 07:01:47,698 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:02:15] 2025-11-26 07:01:47,698 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:02:15] 2025-11-26 07:01:48,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:02:15] 2025-11-26 07:01:48,409 | INFO     | aborting loop
[2025-11-26 02:02:15] 2025-11-26 07:01:48,518 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:02:15] 2025-11-26 07:01:48,675 | INFO     | all data control threads have been joined
[2025-11-26 02:02:15] 2025-11-26 07:01:48,703 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:48,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:02:15] 2025-11-26 07:01:48,746 | INFO     | all payload control threads have been joined
[2025-11-26 02:02:15] 2025-11-26 07:01:48,845 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:48,977 | INFO     | all job control threads have been joined
[2025-11-26 02:02:15] 2025-11-26 07:01:48,988 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:49,058 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:49,414 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:49,680 | INFO     | [data] control thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:49,752 | INFO     | [payload] control thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:49,980 | INFO     | [job] control thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:49,982 | INFO     | [job] validate thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:50,053 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:50,075 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:50,108 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:50,146 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:50,505 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:02:15] 2025-11-26 07:01:50,733 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:51,509 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:01:52,524 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:02:15] 2025-11-26 07:02:08,963 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:02:15] 2025-11-26 07:02:09,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603504641856)>', '<ExcThread(monitor, started 140602398209792)>']
[2025-11-26 02:02:15] 2025-11-26 07:02:09,803 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:02:15] 2025-11-26 07:02:09,803 | INFO     | [monitor] control thread has ended
[2025-11-26 02:02:15] 2025-11-26 07:02:14,710 | INFO     | all workflow threads have been joined
[2025-11-26 02:02:15] 2025-11-26 07:02:14,710 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:02:15] 2025-11-26 07:02:14,710 | INFO     | traces error code: 0
[2025-11-26 02:02:15] 2025-11-26 07:02:14,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:02:15] 2025-11-26 07:02:14,796 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:02:15] 2025-11-26 07:02:14,799 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:02:15] 2025-11-26 07:02:14,802 [wrapper] pilotpid: 12186
[2025-11-26 02:02:15] 2025-11-26 07:02:14,806 [wrapper] Pilot exit status: 0
[2025-11-26 02:02:15] 2025-11-26 07:02:14,820 [wrapper] pandaids: 6896577570
[2025-11-26 02:02:15] 2025-11-26 07:02:14,860 [wrapper] cleanup supervisor_pilot 19281 12187
[2025-11-26 02:02:15] 2025-11-26 07:02:14,864 [wrapper] Test setup, not cleaning
[2025-11-26 02:02:15] 2025-11-26 07:02:14,868 [wrapper] apfmon messages muted
[2025-11-26 02:02:15] 2025-11-26 07:02:14,872 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:02:15] 2025-11-26 07:02:14,875 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:02:15]  *** Error codes and diagnostics ***
[2025-11-26 02:02:15]     "exeErrorCode": 0,
[2025-11-26 02:02:15]     "exeErrorDiag": "",
[2025-11-26 02:02:15]     "pilotErrorCode": 0,
[2025-11-26 02:02:15]     "pilotErrorDiag": "",
[2025-11-26 02:02:15]  *** Listing of results directory ***
[2025-11-26 02:02:15] total 1306672
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 00:11 queuedata.json
[2025-11-26 02:02:15] -rwx------ 1 boincer umatlas     36292 Nov 25 00:12 runpilot2-wrapper.sh
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas       100 Nov 25 19:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:02:15] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 19:35 run_atlas
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas       105 Nov 25 19:35 job.xml
[2025-11-26 02:02:15] -rw-r--r-- 2 boincer umatlas 410184298 Nov 25 19:35 EVNT.47483658._002097.pool.root.1
[2025-11-26 02:02:15] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 19:35 start_atlas.sh
[2025-11-26 02:02:15] drwxrwx--x 2 boincer umatlas      4096 Nov 25 19:35 shared
[2025-11-26 02:02:15] -rw-r--r-- 2 boincer umatlas    590100 Nov 25 19:35 input.tar.gz
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas         0 Nov 25 19:35 boinc_lockfile
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas      2781 Nov 25 19:35 pandaJob.out
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas        57 Nov 25 19:35 setup.sh.local
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas    991877 Nov 25 19:35 agis_schedconf.cvmfs.json
[2025-11-26 02:02:15] drwx------ 5 boincer umatlas      4096 Nov 25 19:35 pilot3
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas       533 Nov 26 01:53 boinc_task_state.xml
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas      5955 Nov 26 01:56 init_data.xml
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas 913172601 Nov 26 02:01 HITS.47556161._000801.pool.root.1
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas        95 Nov 26 02:01 pilot_heartbeat.json
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas      1060 Nov 26 02:01 memory_monitor_summary.json
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas   1516240 Nov 26 02:01 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas   2137533 Nov 26 02:01 log.47556161._000801.job.log.tgz.1
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas      8661 Nov 26 02:01 heartbeat.json
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 02:01 boinc_mmap_file
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas        29 Nov 26 02:01 wrapper_checkpoint.txt
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas      4552 Nov 26 02:02 pilotlog.txt
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas   3239508 Nov 26 02:02 log.47556161._000801.job.log.1
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas       353 Nov 26 02:02 output.list
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas       620 Nov 26 02:02 runtime_log
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas   5396480 Nov 26 02:02 result.tar.gz
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas      9345 Nov 26 02:02 runtime_log.err
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas       669 Nov 26 02:02 aaIMDmhW0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmt8LKDmNIwYHn.diag
[2025-11-26 02:02:15] -rw-r--r-- 1 boincer umatlas     21227 Nov 26 02:02 stderr.txt
[2025-11-26 02:02:15] HITS file was successfully produced:
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas 913172601 Nov 26 02:01 shared/HITS.pool.root.1
[2025-11-26 02:02:15]  *** Contents of shared directory: ***
[2025-11-26 02:02:15] total 1298220
[2025-11-26 02:02:15] -rw-r--r-- 2 boincer umatlas 410184298 Nov 25 19:35 ATLAS.root_0
[2025-11-26 02:02:15] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 19:35 start_atlas.sh
[2025-11-26 02:02:15] -rw-r--r-- 2 boincer umatlas    590100 Nov 25 19:35 input.tar.gz
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas 913172601 Nov 26 02:01 HITS.pool.root.1
[2025-11-26 02:02:15] -rw------- 1 boincer umatlas   5396480 Nov 26 02:02 result.tar.gz
02:02:16 (8486): run_atlas exited; CPU time 264069.936281
02:02:16 (8486): called boinc_finish(0)

</stderr_txt>
]]>

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