Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:43 (3589250): wrapper (7.7.26015): starting
00:03:43 (3589250): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:43] Arguments: --nthreads 9
[2025-11-26 00:03:43] Threads: 9
[2025-11-26 00:03:43] Checking for CVMFS
[2025-11-26 00:03:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:45] 2.13.3.0 11393 29606 335832 153309 2 346 24169990 32935937 17876 16776704 0 89629365 99.381 140863469 40640 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:45] CVMFS is ok
[2025-11-26 00:03:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:45] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:45] Checking for apptainer binary...
[2025-11-26 00:03:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:45] Running /usr/bin/apptainer --version
[2025-11-26 00:03:45] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:47] c6-5-37-2.aglt2.org
[2025-11-26 00:03:47] apptainer works
[2025-11-26 00:03:47] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:47] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:47] Starting ATLAS job with PandaID=6895379539
[2025-11-26 00:03:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:03:22]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:03:22] 2025-11-28 00:27:06,592 | INFO     | monitor loop #9292: job 0:6895379539 is in state 'finished'
[2025-11-28 00:03:22] 2025-11-28 00:27:06,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:03:22] 2025-11-28 00:27:08,027 | INFO     | time since job start (156132s) is within the limit (172800.0s)
[2025-11-28 00:03:22] 2025-11-28 00:27:09,097 | INFO     | monitor loop #9293: job 0:6895379539 is in state 'finished'
[2025-11-28 00:03:22] 2025-11-28 00:27:09,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:03:22] 2025-11-28 00:27:10,033 | INFO     | time since job start (156134s) is within the limit (172800.0s)
[2025-11-28 00:03:22] 2025-11-28 00:27:11,615 | INFO     | monitor loop #9294: job 0:6895379539 is in state 'finished'
[2025-11-28 00:03:22] 2025-11-28 00:27:11,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:03:22] 2025-11-28 00:27:12,040 | INFO     | time since job start (156136s) is within the limit (172800.0s)
[2025-11-28 00:03:22] 2025-11-28 00:27:14,123 | INFO     | monitor loop #9295: job 0:6895379539 is in state 'finished'
[2025-11-28 00:03:22] 2025-11-28 00:27:14,123 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:03:22] 2025-11-28 00:27:14,310 | INFO     | PID=3598551 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:03:22] 2025-11-28 00:27:14,311 | INFO     | .. there are 26 such processes running
[2025-11-28 00:03:22] 2025-11-28 00:27:15,312 | INFO     | time since job start (156139s) is within the limit (172800.0s)
[2025-11-28 00:03:22] 2025-11-28 00:27:16,628 | INFO     | monitor loop #9296: job 0:6895379539 is in state 'finished'
[2025-11-28 00:03:22] 2025-11-28 00:27:16,628 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:03:22] 2025-11-28 00:27:17,321 | INFO     | time since job start (156141s) is within the limit (172800.0s)
[2025-11-28 00:03:22] 2025-11-28 00:27:17,343 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 00:03:22] 2025-11-28 00:27:17,359 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2790.2863749999997
[2025-11-28 00:03:22] 2025-11-28 00:27:17,382 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895379539/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:03:22] 2025-11-28 00:27:17,461 | INFO     | extracted standard info from prmon json
[2025-11-28 00:03:22] 2025-11-28 00:27:17,461 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:03:22] 2025-11-28 00:27:17,461 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:03:22] 2025-11-28 00:27:17,517 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:03:22] 2025-11-28 00:27:17,520 | INFO     | sum of square deviations: 5183394116143.364
[2025-11-28 00:03:22] 2025-11-28 00:27:17,838 | INFO     | sum of deviations: 18189298337921.68
[2025-11-28 00:03:22] 2025-11-28 00:27:17,838 | INFO     | mean x: 1764211615.4262807
[2025-11-28 00:03:22] 2025-11-28 00:27:17,838 | INFO     | mean y: 3051978.8975361753
[2025-11-28 00:03:22] 2025-11-28 00:27:17,843 | INFO     | intersect: -6187828105.692933
[2025-11-28 00:03:22] 2025-11-28 00:27:17,846 | INFO     | chi2: 23.02575328699093
[2025-11-28 00:03:22] 2025-11-28 00:27:17,853 | INFO     | sum of square deviations: 5153047214492.223
[2025-11-28 00:03:22] 2025-11-28 00:27:18,081 | INFO     | sum of deviations: 19154975962592.938
[2025-11-28 00:03:22] 2025-11-28 00:27:18,082 | INFO     | mean x: 1764211462.9380877
[2025-11-28 00:03:22] 2025-11-28 00:27:18,082 | INFO     | mean y: 3056830.7210031347
[2025-11-28 00:03:22] 2025-11-28 00:27:18,082 | INFO     | intersect: -6554893593.344725
[2025-11-28 00:03:22] 2025-11-28 00:27:18,089 | INFO     | chi2: 19.40527018810721
[2025-11-28 00:03:22] 2025-11-28 00:27:18,089 | INFO     | current chi2=19.40527018810721 (change=15.72362499397237 %)
[2025-11-28 00:03:22] 2025-11-28 00:27:18,089 | INFO     | right removable region: 2551
[2025-11-28 00:03:22] 2025-11-28 00:27:18,096 | INFO     | sum of square deviations: 5153037502536.473
[2025-11-28 00:03:22] 2025-11-28 00:27:18,221 | INFO     | sum of deviations: 17100963858249.26
[2025-11-28 00:03:22] 2025-11-28 00:27:18,222 | INFO     | mean x: 1764211767.9388714
[2025-11-28 00:03:22] 2025-11-28 00:27:18,222 | INFO     | mean y: 3057446.321708464
[2025-11-28 00:03:22] 2025-11-28 00:27:18,222 | INFO     | intersect: -5851687772.7787285
[2025-11-28 00:03:22] 2025-11-28 00:27:18,225 | INFO     | chi2: 18.944062396016214
[2025-11-28 00:03:22] 2025-11-28 00:27:18,225 | INFO     | current chi2=18.944062396016214 (change=17.726633479047944 %)
[2025-11-28 00:03:22] 2025-11-28 00:27:18,225 | INFO     | left removable region: 10
[2025-11-28 00:03:22] 2025-11-28 00:27:18,228 | INFO     | sum of square deviations: 5086682166556.3125
[2025-11-28 00:03:22] 2025-11-28 00:27:18,401 | INFO     | sum of deviations: 17348315776057.617
[2025-11-28 00:03:22] 2025-11-28 00:27:18,401 | INFO     | mean x: 1764211737.4659584
[2025-11-28 00:03:22] 2025-11-28 00:27:18,401 | INFO     | mean y: 3067725.741046832
[2025-11-28 00:03:22] 2025-11-28 00:27:18,401 | INFO     | intersect: -6013841000.857662
[2025-11-28 00:03:22] 2025-11-28 00:27:18,404 | INFO     | chi2: 12.070500448219228
[2025-11-28 00:03:22] 2025-11-28 00:27:18,405 | INFO     | current memory leak: 3.41 B/s (using 2541 data points, chi2=12.07)
[2025-11-28 00:03:22] 2025-11-28 00:27:18,412 | INFO     | could have reported an average CPU frequency of 2889 MHz (88 samples)
[2025-11-28 00:03:22] 2025-11-28 00:27:18,412 | INFO     | ..............................
[2025-11-28 00:03:22] 2025-11-28 00:27:18,412 | INFO     | . Timing measurements:
[2025-11-28 00:03:22] 2025-11-28 00:27:18,412 | INFO     | . get job = 0 s
[2025-11-28 00:03:22] 2025-11-28 00:27:18,412 | INFO     | . initial setup = 4 s
[2025-11-28 00:03:22] 2025-11-28 00:27:18,412 | INFO     | . payload setup = 52 s
[2025-11-28 00:03:22] 2025-11-28 00:27:18,412 | INFO     | . stage-in = 0 s
[2025-11-28 00:03:22] 2025-11-28 00:27:18,412 | INFO     | . payload execution = 155971 s
[2025-11-28 00:03:22] 2025-11-28 00:27:18,413 | INFO     | . stage-out = 11 s
[2025-11-28 00:03:22] 2025-11-28 00:27:18,413 | INFO     | . log creation = 2 s
[2025-11-28 00:03:22] 2025-11-28 00:27:18,413 | INFO     | ..............................
[2025-11-28 00:03:22] 2025-11-28 00:27:18,794 | INFO     | 
[2025-11-28 00:03:22] 2025-11-28 00:27:18,809 | INFO     | job summary report
[2025-11-28 00:03:22] 2025-11-28 00:27:18,809 | INFO     | --------------------------------------------------
[2025-11-28 00:03:22] 2025-11-28 00:27:18,809 | INFO     | PanDA job id: 6895379539
[2025-11-28 00:03:22] 2025-11-28 00:27:18,809 | INFO     | task id: 47556137
[2025-11-28 00:03:22] 2025-11-28 00:27:18,810 | INFO     | errors: (none)
[2025-11-28 00:03:22] 2025-11-28 00:27:18,810 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:03:22] 2025-11-28 00:27:18,810 | INFO     | pilot state: finished 
[2025-11-28 00:03:22] 2025-11-28 00:27:18,810 | INFO     | transexitcode: 0
[2025-11-28 00:03:22] 2025-11-28 00:27:18,810 | INFO     | exeerrorcode: 0
[2025-11-28 00:03:22] 2025-11-28 00:27:18,810 | INFO     | exeerrordiag: 
[2025-11-28 00:03:22] 2025-11-28 00:27:18,810 | INFO     | exitcode: 0
[2025-11-28 00:03:22] 2025-11-28 00:27:18,810 | INFO     | exitmsg: OK
[2025-11-28 00:03:22] 2025-11-28 00:27:18,810 | INFO     | cpuconsumptiontime: 259381 s
[2025-11-28 00:03:22] 2025-11-28 00:27:18,811 | INFO     | nevents: 1000
[2025-11-28 00:03:22] 2025-11-28 00:27:18,811 | INFO     | neventsw: 0
[2025-11-28 00:03:22] 2025-11-28 00:27:18,811 | INFO     | pid: 3620245
[2025-11-28 00:03:22] 2025-11-28 00:27:18,811 | INFO     | pgrp: 3620245
[2025-11-28 00:03:22] 2025-11-28 00:27:18,811 | INFO     | corecount: 9
[2025-11-28 00:03:22] 2025-11-28 00:27:18,811 | INFO     | event service: False
[2025-11-28 00:03:22] 2025-11-28 00:27:18,811 | INFO     | sizes: {0: 2284087, 1: 2284171, 2: 2284370, 14: 2284370, 25: 2284398, 31: 2284688, 35: 2284844, 156028: 2380614, 156040: 2389608, 156042: 2389664, 156072: 2389910}
[2025-11-28 00:03:22] 2025-11-28 00:27:18,811 | INFO     | --------------------------------------------------
[2025-11-28 00:03:22] 2025-11-28 00:27:18,811 | INFO     | 
[2025-11-28 00:03:22] 2025-11-28 00:27:18,812 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-28 00:03:22] 2025-11-28 00:27:18,995 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,995 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,996 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,996 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,996 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,996 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,996 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,996 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,996 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,996 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,996 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,997 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,997 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,997 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,997 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,997 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,997 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,997 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:03:22] 2025-11-28 00:27:18,997 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,997 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:03:22] 2025-11-28 00:27:18,998 | INFO     | job 6895379539 has completed (purged errors)
[2025-11-28 00:03:22] 2025-11-28 00:27:18,998 | INFO     | overall cleanup function is called
[2025-11-28 00:03:22] 2025-11-28 00:27:20,052 | INFO     | --- collectZombieJob: --- 10, [3620245]
[2025-11-28 00:03:22] 2025-11-28 00:27:20,053 | INFO     | zombie collector waiting for pid 3620245
[2025-11-28 00:03:22] 2025-11-28 00:27:20,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:03:22] 2025-11-28 00:27:20,053 | INFO     | collected zombie processes
[2025-11-28 00:03:22] 2025-11-28 00:27:20,053 | INFO     | will attempt to kill all subprocesses of pid=3620245
[2025-11-28 00:03:22] 2025-11-28 00:27:21,281 | INFO     | process IDs to be killed: [3620245] (in reverse order)
[2025-11-28 00:03:22] 2025-11-28 00:27:22,067 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:03:22] 2025-11-28 00:27:22,068 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:03:22] 2025-11-28 00:27:22,158 | INFO     | did not find any defunct processes belonging to 3620245
[2025-11-28 00:03:22] 2025-11-28 00:27:22,318 | INFO     | did not find any defunct processes belonging to 3620245
[2025-11-28 00:03:22] 2025-11-28 00:27:22,349 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:03:22] 2025-11-28 00:27:22,349 | INFO     | ready for new job
[2025-11-28 00:03:22] 2025-11-28 00:27:22,350 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:03:22] 2025-11-28 00:27:22,451 | INFO     | ***************************************
[2025-11-28 00:03:22] 2025-11-28 00:27:22,452 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:03:22] 2025-11-28 00:27:22,452 | INFO     | ***************************************
[2025-11-28 00:03:22] 2025-11-28 00:27:22,452 | INFO     | 
[2025-11-28 00:03:22] 2025-11-28 00:27:22,467 | INFO     | architecture information:
[2025-11-28 00:03:22] 2025-11-28 00:27:22,467 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:03:22] 2025-11-28 00:27:22,569 | INFO     | cat /etc/os-release:
[2025-11-28 00:03:22] NAME="CentOS Linux"
[2025-11-28 00:03:22] VERSION="7 (Core)"
[2025-11-28 00:03:22] ID="centos"
[2025-11-28 00:03:22] ID_LIKE="rhel fedora"
[2025-11-28 00:03:22] VERSION_ID="7"
[2025-11-28 00:03:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:03:22] ANSI_COLOR="0;31"
[2025-11-28 00:03:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:03:22] HOME_URL="https://www.centos.org/"
[2025-11-28 00:03:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:03:22] 
[2025-11-28 00:03:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:03:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:03:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:03:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:03:22] 
[2025-11-28 00:03:22] 2025-11-28 00:27:22,569 | INFO     | ***************************************
[2025-11-28 00:03:22] 2025-11-28 00:27:23,073 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-28 00:03:22] 2025-11-28 00:27:23,339 | INFO     | sufficient remaining disk space (69678923776 B)
[2025-11-28 00:03:22] 2025-11-28 00:27:23,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:03:22] 2025-11-28 00:27:23,339 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:03:22] 2025-11-28 00:27:23,339 | INFO     | update_server=False
[2025-11-28 00:03:22] 2025-11-28 00:27:23,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:03:22] 2025-11-28 00:27:23,343 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:03:22] 2025-11-28 00:27:23,343 | INFO     | aborting loop
[2025-11-28 00:03:22] 2025-11-28 00:27:23,657 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:03:22] 2025-11-28 00:27:23,803 | INFO     | all data control threads have been joined
[2025-11-28 00:03:22] 2025-11-28 00:27:23,974 | INFO     | all payload control threads have been joined
[2025-11-28 00:03:22] 2025-11-28 00:27:24,288 | INFO     | all job control threads have been joined
[2025-11-28 00:03:22] 2025-11-28 00:27:24,348 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:24,349 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:24,430 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:03:22] 2025-11-28 00:27:24,663 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:24,833 | INFO     | [data] control thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:24,844 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:24,882 | INFO     | [job] validate thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:24,981 | INFO     | [payload] control thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:25,272 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:25,295 | INFO     | [job] control thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:25,416 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:25,416 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:25,418 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:25,436 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:25,891 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:25,921 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:03:22] 2025-11-28 00:27:26,443 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:29,977 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:03:22] 2025-11-28 00:27:40,978 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:03:22] 2025-11-28 00:27:42,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140268358805312)>', '<ExcThread(monitor, started 140267726305024)>']
[2025-11-28 00:03:22] 2025-11-28 00:27:47,603 | INFO     | all workflow threads have been joined
[2025-11-28 00:03:22] 2025-11-28 00:27:47,605 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:03:22] 2025-11-28 00:27:47,606 | INFO     | traces error code: 0
[2025-11-28 00:03:22] 2025-11-28 00:27:47,606 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:03:22] 2025-11-28 00:27:54,621 | INFO     | PID=3598551 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:03:22] 2025-11-28 00:27:54,838 | INFO     | .. there are 26 such processes running
[2025-11-28 00:03:22] 2025-11-28 00:27:54,838 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:03:22] 2025-11-28 00:27:54,838 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:03:22] 2025-11-28 00:27:54,838 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:03:22] 2025-11-28 00:27:54,838 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:03:22] 2025-11-28 00:27:54,838 | INFO     | [monitor] control thread has ended
[2025-11-28 00:03:22] 2025-11-28 00:27:55,424 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:03:22] 2025-11-28 00:27:55,443 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:03:22] 2025-11-28 00:27:55,464 [wrapper] pilotpid: 3598551
[2025-11-28 00:03:22] 2025-11-28 00:27:55,495 [wrapper] Pilot exit status: 0
[2025-11-28 00:03:22] 2025-11-28 00:27:55,623 [wrapper] pandaids: 6895379539
[2025-11-28 00:03:22] 2025-11-28 00:27:55,793 [wrapper] cleanup supervisor_pilot 2825550 3598552
[2025-11-28 00:03:22] 2025-11-28 00:27:55,811 [wrapper] Test setup, not cleaning
[2025-11-28 00:03:22] 2025-11-28 00:27:55,825 [wrapper] apfmon messages muted
[2025-11-28 00:03:22] 2025-11-28 00:27:55,829 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:03:22] 2025-11-28 00:27:55,833 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:03:22]  *** Error codes and diagnostics ***
[2025-11-28 00:03:22]     "exeErrorCode": 0,
[2025-11-28 00:03:22]     "exeErrorDiag": "",
[2025-11-28 00:03:22]     "pilotErrorCode": 0,
[2025-11-28 00:03:22]     "pilotErrorDiag": "",
[2025-11-28 00:03:22]  *** Listing of results directory ***
[2025-11-28 00:03:22] total 1350892
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 21:14 pilot3.tar.gz
[2025-11-28 00:03:22] -rwx------. 1 boincer umatlas     36292 Nov 23 21:26 runpilot2-wrapper.sh
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 21:26 queuedata.json
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:03:22] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-28 00:03:22] -rw-r--r--. 2 boincer umatlas 411146173 Nov 26 00:03 EVNT.47483658._000980.pool.root.1
[2025-11-28 00:03:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-28 00:03:22] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-28 00:03:22] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 00:03 input.tar.gz
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:03 pandaJob.out
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-28 00:03:22] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:51 boinc_task_state.xml
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas 922250920 Nov 27 19:24 HITS.47556137._009667.pool.root.1
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas      1059 Nov 27 19:26 memory_monitor_summary.json
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:26 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas   3372663 Nov 27 19:26 log.47556137._009667.job.log.tgz.1
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas        95 Nov 27 19:27 pilot_heartbeat.json
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas      7968 Nov 27 19:27 heartbeat.json
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas       823 Nov 27 19:27 pilotlog.txt
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas  19629538 Nov 27 19:27 log.47556137._009667.job.log.1
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas       353 Nov 27 19:27 output.list
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:27 runtime_log
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas  23019520 Nov 27 19:27 result.tar.gz
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas      9349 Nov 27 19:27 runtime_log.err
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas       665 Nov 27 19:27 p0RLDmySbh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxLLKDmfU4aXn.diag
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas      6844 Nov 28 00:03 init_data.xml
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 00:03 boinc_mmap_file
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas        29 Nov 28 00:03 wrapper_checkpoint.txt
[2025-11-28 00:03:22] -rw-r--r--. 1 boincer umatlas     21906 Nov 28 00:03 stderr.txt
[2025-11-28 00:03:22] HITS file was successfully produced:
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas 922250920 Nov 27 19:24 shared/HITS.pool.root.1
[2025-11-28 00:03:22]  *** Contents of shared directory: ***
[2025-11-28 00:03:22] total 1325232
[2025-11-28 00:03:22] -rw-r--r--. 2 boincer umatlas 411146173 Nov 26 00:03 ATLAS.root_0
[2025-11-28 00:03:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-28 00:03:22] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 00:03 input.tar.gz
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas 922250920 Nov 27 19:24 HITS.pool.root.1
[2025-11-28 00:03:22] -rw-------. 1 boincer umatlas  23019520 Nov 27 19:27 result.tar.gz
00:03:24 (3589250): run_atlas exited; CPU time 262697.671508
00:03:24 (3589250): called boinc_finish(0)

</stderr_txt>
]]>

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