Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:31:23 (1053251): wrapper (7.7.26015): starting
19:31:23 (1053251): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:31:23] Arguments: --nthreads 8
[2025-11-25 19:31:23] Threads: 8
[2025-11-25 19:31:23] Checking for CVMFS
[2025-11-25 19:31:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:31:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:31:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:31:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:31:24] 2.13.3.0 10299 29332 385116 153303 3 150 25207461 32935936 52421 16776704 0 289120123 99.814 133226867 28784 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:31:24] CVMFS is ok
[2025-11-25 19:31:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:31:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:31:24] Further information can be found at the LHC@home message board.
[2025-11-25 19:31:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:31:24] Checking for apptainer binary...
[2025-11-25 19:31:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:31:24] Running /usr/bin/apptainer --version
[2025-11-25 19:31:24] apptainer version 1.4.4-1.el9
[2025-11-25 19:31:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:31:24] c-3-40.aglt2.org
[2025-11-25 19:31:24] apptainer works
[2025-11-25 19:31:24] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:31:24] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:31:25] Starting ATLAS job with PandaID=6896577493
[2025-11-25 19:31:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:25:22]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:25:22] 2025-11-26 19:24:37,601 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:25:22] 2025-11-26 19:24:37,601 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:25:22] 2025-11-26 19:24:37,617 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:25:22] 2025-11-26 19:24:37,618 | INFO     | sum of square deviations: 426373059640.89136
[2025-11-26 14:25:22] 2025-11-26 19:24:37,640 | INFO     | sum of deviations: 3145797165389.576
[2025-11-26 14:25:22] 2025-11-26 19:24:37,641 | INFO     | mean x: 1764151140.7266188
[2025-11-26 14:25:22] 2025-11-26 19:24:37,641 | INFO     | mean y: 2869258.301258993
[2025-11-26 14:25:22] 2025-11-26 19:24:37,641 | INFO     | intersect: -13013107085.25744
[2025-11-26 14:25:22] 2025-11-26 19:24:37,642 | INFO     | chi2: 12.614313416723775
[2025-11-26 14:25:22] 2025-11-26 19:24:37,643 | INFO     | sum of square deviations: 420647824113.3349
[2025-11-26 14:25:22] 2025-11-26 19:24:37,665 | INFO     | sum of deviations: 3533735623254.5503
[2025-11-26 14:25:22] 2025-11-26 19:24:37,665 | INFO     | mean x: 1764150988.232159
[2025-11-26 14:25:22] 2025-11-26 19:24:37,665 | INFO     | mean y: 2879590.3441734416
[2025-11-26 14:25:22] 2025-11-26 19:24:37,665 | INFO     | intersect: -14817221298.222565
[2025-11-26 14:25:22] 2025-11-26 19:24:37,667 | INFO     | chi2: 9.291336132854822
[2025-11-26 14:25:22] 2025-11-26 19:24:37,667 | INFO     | current chi2=9.291336132854822 (change=26.3429104231977 %)
[2025-11-26 14:25:22] 2025-11-26 19:24:37,668 | INFO     | sum of square deviations: 414974077923.20996
[2025-11-26 14:25:22] 2025-11-26 19:24:37,694 | INFO     | sum of deviations: 3676370666571.06
[2025-11-26 14:25:22] 2025-11-26 19:24:37,694 | INFO     | mean x: 1764150835.7377496
[2025-11-26 14:25:22] 2025-11-26 19:24:37,695 | INFO     | mean y: 2883420.726860254
[2025-11-26 14:25:22] 2025-11-26 19:24:37,695 | INFO     | intersect: -15626219043.628136
[2025-11-26 14:25:22] 2025-11-26 19:24:37,696 | INFO     | chi2: 8.64241486313701
[2025-11-26 14:25:22] 2025-11-26 19:24:37,696 | INFO     | current chi2=8.64241486313701 (change=6.984154490151107 %)
[2025-11-26 14:25:22] 2025-11-26 19:24:37,696 | INFO     | right removable region: 1101
[2025-11-26 14:25:22] 2025-11-26 19:24:37,697 | INFO     | sum of square deviations: 420646992073.33527
[2025-11-26 14:25:22] 2025-11-26 19:24:37,719 | INFO     | sum of deviations: 2703247339913.9956
[2025-11-26 14:25:22] 2025-11-26 19:24:37,719 | INFO     | mean x: 1764151293.232159
[2025-11-26 14:25:22] 2025-11-26 19:24:37,719 | INFO     | mean y: 2881042.0
[2025-11-26 14:25:22] 2025-11-26 19:24:37,719 | INFO     | intersect: -11334267161.8418
[2025-11-26 14:25:22] 2025-11-26 19:24:37,720 | INFO     | chi2: 8.389994849434716
[2025-11-26 14:25:22] 2025-11-26 19:24:37,721 | INFO     | current chi2=8.389994849434716 (change=33.48829561891614 %)
[2025-11-26 14:25:22] 2025-11-26 19:24:37,722 | INFO     | sum of square deviations: 414972413843.20966
[2025-11-26 14:25:22] 2025-11-26 19:24:37,743 | INFO     | sum of deviations: 2309242253886.968
[2025-11-26 14:25:22] 2025-11-26 19:24:37,743 | INFO     | mean x: 1764151445.7377496
[2025-11-26 14:25:22] 2025-11-26 19:24:37,744 | INFO     | mean y: 2891627.9791288567
[2025-11-26 14:25:22] 2025-11-26 19:24:37,744 | INFO     | intersect: -9814274344.630873
[2025-11-26 14:25:22] 2025-11-26 19:24:37,745 | INFO     | chi2: 5.169615569223397
[2025-11-26 14:25:22] 2025-11-26 19:24:37,745 | INFO     | current chi2=5.169615569223397 (change=38.383566831728096 %)
[2025-11-26 14:25:22] 2025-11-26 19:24:37,746 | INFO     | sum of square deviations: 409349226468.98444
[2025-11-26 14:25:22] 2025-11-26 19:24:37,767 | INFO     | sum of deviations: 2109597338637.4656
[2025-11-26 14:25:22] 2025-11-26 19:24:37,768 | INFO     | mean x: 1764151598.2415679
[2025-11-26 14:25:22] 2025-11-26 19:24:37,768 | INFO     | mean y: 2897037.2397447582
[2025-11-26 14:25:22] 2025-11-26 19:24:37,768 | INFO     | intersect: -9088727609.77892
[2025-11-26 14:25:22] 2025-11-26 19:24:37,769 | INFO     | chi2: 4.342335529966317
[2025-11-26 14:25:22] 2025-11-26 19:24:37,769 | INFO     | current chi2=4.342335529966317 (change=16.002738079445958 %)
[2025-11-26 14:25:22] 2025-11-26 19:24:37,769 | INFO     | left removable region: 30
[2025-11-26 14:25:22] 2025-11-26 19:24:37,770 | INFO     | sum of square deviations: 380927908439.8393
[2025-11-26 14:25:22] 2025-11-26 19:24:37,792 | INFO     | sum of deviations: 2432954704622.6143
[2025-11-26 14:25:22] 2025-11-26 19:24:37,792 | INFO     | mean x: 1764151720.2595706
[2025-11-26 14:25:22] 2025-11-26 19:24:37,792 | INFO     | mean y: 2918213.3790849675
[2025-11-26 14:25:22] 2025-11-26 19:24:37,792 | INFO     | intersect: -11264571336.159815
[2025-11-26 14:25:22] 2025-11-26 19:24:37,794 | INFO     | chi2: 0.11945185534709304
[2025-11-26 14:25:22] 2025-11-26 19:24:37,794 | INFO     | current memory leak: 6.39 B/s (using 1071 data points, chi2=0.12)
[2025-11-26 14:25:22] 2025-11-26 19:24:37,795 | INFO     | could have reported an average CPU frequency of 2949 MHz (40 samples)
[2025-11-26 14:25:22] 2025-11-26 19:24:37,795 | INFO     | ..............................
[2025-11-26 14:25:22] 2025-11-26 19:24:37,795 | INFO     | . Timing measurements:
[2025-11-26 14:25:22] 2025-11-26 19:24:37,795 | INFO     | . get job = 0 s
[2025-11-26 14:25:22] 2025-11-26 19:24:37,795 | INFO     | . initial setup = 4 s
[2025-11-26 14:25:22] 2025-11-26 19:24:37,795 | INFO     | . payload setup = 33 s
[2025-11-26 14:25:22] 2025-11-26 19:24:37,795 | INFO     | . stage-in = 0 s
[2025-11-26 14:25:22] 2025-11-26 19:24:37,795 | INFO     | . payload execution = 67825 s
[2025-11-26 14:25:22] 2025-11-26 19:24:37,796 | INFO     | . stage-out = 6 s
[2025-11-26 14:25:22] 2025-11-26 19:24:37,796 | INFO     | . log creation = 0 s
[2025-11-26 14:25:22] 2025-11-26 19:24:37,796 | INFO     | ..............................
[2025-11-26 14:25:22] 2025-11-26 19:24:37,886 | INFO     | 
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | job summary report
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | --------------------------------------------------
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | PanDA job id: 6896577493
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | task id: 47556161
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | errors: (none)
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | pilot state: finished 
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | transexitcode: 0
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | exeerrorcode: 0
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | exeerrordiag: 
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | exitcode: 0
[2025-11-26 14:25:22] 2025-11-26 19:24:37,887 | INFO     | exitmsg: OK
[2025-11-26 14:25:22] 2025-11-26 19:24:37,888 | INFO     | cpuconsumptiontime: 253532 s
[2025-11-26 14:25:22] 2025-11-26 19:24:37,888 | INFO     | nevents: 1000
[2025-11-26 14:25:22] 2025-11-26 19:24:37,888 | INFO     | neventsw: 0
[2025-11-26 14:25:22] 2025-11-26 19:24:37,888 | INFO     | pid: 1076180
[2025-11-26 14:25:22] 2025-11-26 19:24:37,888 | INFO     | pgrp: 1076180
[2025-11-26 14:25:22] 2025-11-26 19:24:37,888 | INFO     | corecount: 8
[2025-11-26 14:25:22] 2025-11-26 19:24:37,888 | INFO     | event service: False
[2025-11-26 14:25:22] 2025-11-26 19:24:37,888 | INFO     | sizes: {0: 2284040, 1: 2284068, 2: 2284267, 13: 2284267, 24: 2284585, 35: 2284613, 67863: 2339003, 67870: 2348081, 67882: 2348271}
[2025-11-26 14:25:22] 2025-11-26 19:24:37,888 | INFO     | --------------------------------------------------
[2025-11-26 14:25:22] 2025-11-26 19:24:37,888 | INFO     | 
[2025-11-26 14:25:22] 2025-11-26 19:24:37,888 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 14:25:22] 2025-11-26 19:24:37,934 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,934 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,938 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,938 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,938 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,938 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,938 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,938 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,938 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,938 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,939 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:25:22] 2025-11-26 19:24:37,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,939 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:25:22] 2025-11-26 19:24:37,939 | INFO     | job 6896577493 has completed (purged errors)
[2025-11-26 14:25:22] 2025-11-26 19:24:37,939 | INFO     | overall cleanup function is called
[2025-11-26 14:25:22] 2025-11-26 19:24:38,967 | INFO     | --- collectZombieJob: --- 10, [1076180]
[2025-11-26 14:25:22] 2025-11-26 19:24:38,967 | INFO     | zombie collector waiting for pid 1076180
[2025-11-26 14:25:22] 2025-11-26 19:24:38,967 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:25:22] 2025-11-26 19:24:38,967 | INFO     | collected zombie processes
[2025-11-26 14:25:22] 2025-11-26 19:24:38,967 | INFO     | will attempt to kill all subprocesses of pid=1076180
[2025-11-26 14:25:22] 2025-11-26 19:24:40,108 | INFO     | process IDs to be killed: [1076180] (in reverse order)
[2025-11-26 14:25:22] 2025-11-26 19:24:40,621 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:25:22] 2025-11-26 19:24:40,621 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:25:22] 2025-11-26 19:24:40,649 | INFO     | did not find any defunct processes belonging to 1076180
[2025-11-26 14:25:22] 2025-11-26 19:24:40,676 | INFO     | did not find any defunct processes belonging to 1076180
[2025-11-26 14:25:22] 2025-11-26 19:24:40,677 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:25:22] 2025-11-26 19:24:40,677 | INFO     | ready for new job
[2025-11-26 14:25:22] 2025-11-26 19:24:40,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:25:22] 2025-11-26 19:24:40,682 | INFO     | ***************************************
[2025-11-26 14:25:22] 2025-11-26 19:24:40,684 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:25:22] 2025-11-26 19:24:40,684 | INFO     | ***************************************
[2025-11-26 14:25:22] 2025-11-26 19:24:40,684 | INFO     | 
[2025-11-26 14:25:22] 2025-11-26 19:24:40,689 | INFO     | architecture information:
[2025-11-26 14:25:22] 2025-11-26 19:24:40,689 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:25:22] 2025-11-26 19:24:40,723 | INFO     | cat /etc/os-release:
[2025-11-26 14:25:22] NAME="CentOS Linux"
[2025-11-26 14:25:22] VERSION="7 (Core)"
[2025-11-26 14:25:22] ID="centos"
[2025-11-26 14:25:22] ID_LIKE="rhel fedora"
[2025-11-26 14:25:22] VERSION_ID="7"
[2025-11-26 14:25:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:25:22] ANSI_COLOR="0;31"
[2025-11-26 14:25:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:25:22] HOME_URL="https://www.centos.org/"
[2025-11-26 14:25:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:25:22] 
[2025-11-26 14:25:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:25:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:25:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:25:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:25:22] 
[2025-11-26 14:25:22] 2025-11-26 19:24:40,723 | INFO     | ***************************************
[2025-11-26 14:25:22] 2025-11-26 19:24:41,226 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 14:25:22] 2025-11-26 19:24:41,253 | INFO     | sufficient remaining disk space (69163024384 B)
[2025-11-26 14:25:22] 2025-11-26 19:24:41,254 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:25:22] 2025-11-26 19:24:41,254 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:25:22] 2025-11-26 19:24:41,254 | INFO     | update_server=False
[2025-11-26 14:25:22] 2025-11-26 19:24:41,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:25:22] 2025-11-26 19:24:41,261 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:25:22] 2025-11-26 19:24:41,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:25:22] 2025-11-26 19:24:41,266 | INFO     | aborting loop
[2025-11-26 14:25:22] 2025-11-26 19:24:41,271 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:25:22] 2025-11-26 19:24:41,683 | INFO     | all job control threads have been joined
[2025-11-26 14:25:22] 2025-11-26 19:24:41,949 | INFO     | all payload control threads have been joined
[2025-11-26 14:25:22] 2025-11-26 19:24:42,108 | INFO     | all data control threads have been joined
[2025-11-26 14:25:22] 2025-11-26 19:24:42,264 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:42,273 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:42,468 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:42,468 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:42,662 | INFO     | [job] validate thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:42,670 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:42,675 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:42,694 | INFO     | [job] control thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:42,902 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:25:22] 2025-11-26 19:24:42,915 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:42,956 | INFO     | [payload] control thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:43,114 | INFO     | [data] control thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:43,211 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:43,280 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:43,429 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:43,908 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:24:45,271 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:25:22] 2025-11-26 19:25:11,055 | INFO     | PID=1058909 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 14:25:22] 2025-11-26 19:25:11,055 | INFO     | .. there are 76 such processes running
[2025-11-26 14:25:22] 2025-11-26 19:25:11,055 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:25:22] 2025-11-26 19:25:11,055 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:25:22] 2025-11-26 19:25:11,055 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:25:22] 2025-11-26 19:25:14,797 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:25:22] 2025-11-26 19:25:16,515 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140226033428288)>', '<ExcThread(monitor, started 140225674192640)>']
[2025-11-26 14:25:22] 2025-11-26 19:25:17,128 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:25:22] 2025-11-26 19:25:17,128 | INFO     | [monitor] control thread has ended
[2025-11-26 14:25:22] 2025-11-26 19:25:21,542 | INFO     | all workflow threads have been joined
[2025-11-26 14:25:22] 2025-11-26 19:25:21,543 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:25:22] 2025-11-26 19:25:21,543 | INFO     | traces error code: 0
[2025-11-26 14:25:22] 2025-11-26 19:25:21,543 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:25:22] 2025-11-26 19:25:21,773 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:25:22] 2025-11-26 19:25:21,803 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:25:22] 2025-11-26 19:25:21,807 [wrapper] pilotpid: 1058909
[2025-11-26 14:25:22] 2025-11-26 19:25:21,811 [wrapper] Pilot exit status: 0
[2025-11-26 14:25:22] 2025-11-26 19:25:21,852 [wrapper] pandaids: 6896577493
[2025-11-26 14:25:22] 2025-11-26 19:25:22,133 [wrapper] cleanup supervisor_pilot 3118325 1058910
[2025-11-26 14:25:22] 2025-11-26 19:25:22,161 [wrapper] Test setup, not cleaning
[2025-11-26 14:25:22] 2025-11-26 19:25:22,178 [wrapper] apfmon messages muted
[2025-11-26 14:25:22] 2025-11-26 19:25:22,196 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:25:22] 2025-11-26 19:25:22,220 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:25:22]  *** Error codes and diagnostics ***
[2025-11-26 14:25:22]     "exeErrorCode": 0,
[2025-11-26 14:25:22]     "exeErrorDiag": "",
[2025-11-26 14:25:22]     "pilotErrorCode": 0,
[2025-11-26 14:25:22]     "pilotErrorDiag": "",
[2025-11-26 14:25:22]  *** Listing of results directory ***
[2025-11-26 14:25:22] total 1325844
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 14:25:22] -rwx------. 1 boincer umatlas     36292 Nov 25 00:11 runpilot2-wrapper.sh
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:11 queuedata.json
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:25:22] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:31 run_atlas
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:31 job.xml
[2025-11-26 14:25:22] -rw-r--r--. 2 boincer umatlas 410625898 Nov 25 19:31 EVNT.47483658._002091.pool.root.1
[2025-11-26 14:25:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:31 start_atlas.sh
[2025-11-26 14:25:22] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:31 shared
[2025-11-26 14:25:22] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 19:31 input.tar.gz
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:31 boinc_lockfile
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 19:31 pandaJob.out
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas        57 Nov 25 19:31 setup.sh.local
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas    991877 Nov 25 19:32 agis_schedconf.cvmfs.json
[2025-11-26 14:25:22] drwx------. 5 boincer umatlas      4096 Nov 25 19:32 pilot3
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas       533 Nov 26 14:12 boinc_task_state.xml
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas      6842 Nov 26 14:19 init_data.xml
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas 922472114 Nov 26 14:23 HITS.47556161._000749.pool.root.1
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas      1059 Nov 26 14:24 memory_monitor_summary.json
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas        95 Nov 26 14:24 pilot_heartbeat.json
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas   1516240 Nov 26 14:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas   2197605 Nov 26 14:24 log.47556161._000749.job.log.tgz.1
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas      7944 Nov 26 14:24 heartbeat.json
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 14:25 boinc_mmap_file
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas        29 Nov 26 14:25 wrapper_checkpoint.txt
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas      4824 Nov 26 14:25 pilotlog.txt
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas   8128919 Nov 26 14:25 log.47556161._000749.job.log.1
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas       353 Nov 26 14:25 output.list
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas       620 Nov 26 14:25 runtime_log
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas  10342400 Nov 26 14:25 result.tar.gz
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas      9333 Nov 26 14:25 runtime_log.err
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas       658 Nov 26 14:25 fl9KDmfV0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmm8LKDmXFR0Mn.diag
[2025-11-26 14:25:22] -rw-r--r--. 1 boincer umatlas     21130 Nov 26 14:25 stderr.txt
[2025-11-26 14:25:22] HITS file was successfully produced:
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas 922472114 Nov 26 14:23 shared/HITS.pool.root.1
[2025-11-26 14:25:22]  *** Contents of shared directory: ***
[2025-11-26 14:25:22] total 1312560
[2025-11-26 14:25:22] -rw-r--r--. 2 boincer umatlas 410625898 Nov 25 19:31 ATLAS.root_0
[2025-11-26 14:25:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:31 start_atlas.sh
[2025-11-26 14:25:22] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 19:31 input.tar.gz
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas 922472114 Nov 26 14:23 HITS.pool.root.1
[2025-11-26 14:25:22] -rw-------. 1 boincer umatlas  10342400 Nov 26 14:25 result.tar.gz
14:25:24 (1053251): run_atlas exited; CPU time 256948.913896
14:25:24 (1053251): called boinc_finish(0)

</stderr_txt>
]]>

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