Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:41:18 (3358632): wrapper (7.7.26015): starting
19:41:18 (3358632): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:41:18] Arguments: --nthreads 8
[2025-11-25 19:41:18] Threads: 8
[2025-11-25 19:41:18] Checking for CVMFS
[2025-11-25 19:41:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:41:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:41:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:41:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:41:20] 2.13.3.0 11959 29344 375432 153303 3 539 18688638 32935936 44783 16776704 0 145169241 99.493 190750370 34982 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:41:20] CVMFS is ok
[2025-11-25 19:41:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:41:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:41:20] Further information can be found at the LHC@home message board.
[2025-11-25 19:41:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:41:20] Checking for apptainer binary...
[2025-11-25 19:41:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:41:20] Running /usr/bin/apptainer --version
[2025-11-25 19:41:20] apptainer version 1.4.4-1.el9
[2025-11-25 19:41:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:41:21] c6-12-27-3.aglt2.org
[2025-11-25 19:41:21] apptainer works
[2025-11-25 19:41:21] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:41:21] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:41:21] Starting ATLAS job with PandaID=6896577494
[2025-11-25 19:41:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:40:12 (3358632): BOINC client no longer exists - exiting
22:40:12 (3358632): timer handler: client dead, exiting
22:40:58 (92904): wrapper (7.7.26015): starting
22:40:58 (92904): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:40:58] Arguments: --nthreads 8
[2025-11-25 22:40:58] Threads: 8
[2025-11-25 22:40:58] This job has been restarted, cleaning up previous attempt
[2025-11-25 22:40:58] Checking for CVMFS
[2025-11-25 22:40:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:40:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:40:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:40:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:40:58] 2.13.3.0 11959 29524 360564 153307 0 114 23867828 32935936 38194 16776704 0 146671134 99.494 192036547 34946 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:40:58] CVMFS is ok
[2025-11-25 22:40:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:40:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:40:58] Further information can be found at the LHC@home message board.
[2025-11-25 22:40:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:40:58] Checking for apptainer binary...
[2025-11-25 22:40:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:40:58] Running /usr/bin/apptainer --version
[2025-11-25 22:40:58] apptainer version 1.4.4-1.el9
[2025-11-25 22:40:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:40:58] c6-12-27-3.aglt2.org
[2025-11-25 22:40:58] apptainer works
[2025-11-25 22:40:58] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:40:58] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:40:58] Starting ATLAS job with PandaID=6896577494
[2025-11-25 22:40:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:22:17]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:22:17] 2025-11-27 06:21:05,064 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 01:22:17] 2025-11-27 06:21:05,078 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2696.2869375000005
[2025-11-27 01:22:17] 2025-11-27 06:21:05,096 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896577494/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:22:17] 2025-11-27 06:21:05,096 | INFO     | extracted standard info from prmon json
[2025-11-27 01:22:17] 2025-11-27 06:21:05,096 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:22:17] 2025-11-27 06:21:05,097 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:22:17] 2025-11-27 06:21:05,125 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:22:17] 2025-11-27 06:21:05,128 | INFO     | sum of square deviations: 1206870110733.2292
[2025-11-27 01:22:17] 2025-11-27 06:21:05,179 | INFO     | sum of deviations: 5160216355886.05
[2025-11-27 01:22:17] 2025-11-27 06:21:05,180 | INFO     | mean x: 1764176445.041958
[2025-11-27 01:22:17] 2025-11-27 06:21:05,180 | INFO     | mean y: 2938443.9535918627
[2025-11-27 01:22:17] 2025-11-27 06:21:05,180 | INFO     | intersect: -7540153447.553775
[2025-11-27 01:22:17] 2025-11-27 06:21:05,182 | INFO     | chi2: 8.63087770645392
[2025-11-27 01:22:17] 2025-11-27 06:21:05,184 | INFO     | sum of square deviations: 1195399871951.2834
[2025-11-27 01:22:17] 2025-11-27 06:21:05,234 | INFO     | sum of deviations: 5709547222879.955
[2025-11-27 01:22:17] 2025-11-27 06:21:05,234 | INFO     | mean x: 1764176292.554847
[2025-11-27 01:22:17] 2025-11-27 06:21:05,235 | INFO     | mean y: 2945745.9540816327
[2025-11-27 01:22:17] 2025-11-27 06:21:05,235 | INFO     | intersect: -8423228698.40597
[2025-11-27 01:22:17] 2025-11-27 06:21:05,237 | INFO     | chi2: 5.354972349019887
[2025-11-27 01:22:17] 2025-11-27 06:21:05,237 | INFO     | current chi2=5.354972349019887 (change=37.955645634793385 %)
[2025-11-27 01:22:17] 2025-11-27 06:21:05,239 | INFO     | sum of square deviations: 1184002469371.9448
[2025-11-27 01:22:17] 2025-11-27 06:21:05,288 | INFO     | sum of deviations: 6222206380524.118
[2025-11-27 01:22:17] 2025-11-27 06:21:05,289 | INFO     | mean x: 1764176140.0671785
[2025-11-27 01:22:17] 2025-11-27 06:21:05,289 | INFO     | mean y: 2952603.0179142673
[2025-11-27 01:22:17] 2025-11-27 06:21:05,289 | INFO     | intersect: -9268200387.834549
[2025-11-27 01:22:17] 2025-11-27 06:21:05,291 | INFO     | chi2: 2.35760015768283
[2025-11-27 01:22:17] 2025-11-27 06:21:05,291 | INFO     | current chi2=2.35760015768283 (change=55.973625930779306 %)
[2025-11-27 01:22:17] 2025-11-27 06:21:05,293 | INFO     | sum of square deviations: 1172677670615.79
[2025-11-27 01:22:17] 2025-11-27 06:21:05,344 | INFO     | sum of deviations: 6323116796375.366
[2025-11-27 01:22:17] 2025-11-27 06:21:05,344 | INFO     | mean x: 1764175987.5789473
[2025-11-27 01:22:17] 2025-11-27 06:21:05,345 | INFO     | mean y: 2953959.9807445444
[2025-11-27 01:22:17] 2025-11-27 06:21:05,345 | INFO     | intersect: -9509541330.361774
[2025-11-27 01:22:17] 2025-11-27 06:21:05,347 | INFO     | chi2: 2.08773243360179
[2025-11-27 01:22:17] 2025-11-27 06:21:05,348 | INFO     | current chi2=2.08773243360179 (change=11.446713014571559 %)
[2025-11-27 01:22:17] 2025-11-27 06:21:05,348 | INFO     | right removable region: 1557
[2025-11-27 01:22:17] 2025-11-27 06:21:05,350 | INFO     | sum of square deviations: 1195396376795.71
[2025-11-27 01:22:17] 2025-11-27 06:21:05,411 | INFO     | sum of deviations: 4769728391900.386
[2025-11-27 01:22:17] 2025-11-27 06:21:05,411 | INFO     | mean x: 1764176597.552296
[2025-11-27 01:22:17] 2025-11-27 06:21:05,412 | INFO     | mean y: 2943629.4891581633
[2025-11-27 01:22:17] 2025-11-27 06:21:05,412 | INFO     | intersect: -7036263924.600197
[2025-11-27 01:22:17] 2025-11-27 06:21:05,414 | INFO     | chi2: 6.803848068515212
[2025-11-27 01:22:17] 2025-11-27 06:21:05,416 | INFO     | current chi2=6.803848068515212 (change=21.16852654015139 %)
[2025-11-27 01:22:17] 2025-11-27 06:21:05,416 | INFO     | left removable region: 10
[2025-11-27 01:22:17] 2025-11-27 06:21:05,418 | INFO     | sum of square deviations: 1148012144197.8423
[2025-11-27 01:22:17] 2025-11-27 06:21:05,628 | INFO     | sum of deviations: 5789525404101.356
[2025-11-27 01:22:17] 2025-11-27 06:21:05,628 | INFO     | mean x: 1764176262.095669
[2025-11-27 01:22:17] 2025-11-27 06:21:05,628 | INFO     | mean y: 2960932.3826761474
[2025-11-27 01:22:17] 2025-11-27 06:21:05,628 | INFO     | intersect: -8893933876.907133
[2025-11-27 01:22:17] 2025-11-27 06:21:05,638 | INFO     | chi2: 0.16326814381598778
[2025-11-27 01:22:17] 2025-11-27 06:21:05,639 | INFO     | current memory leak: 5.04 B/s (using 1547 data points, chi2=0.16)
[2025-11-27 01:22:17] 2025-11-27 06:21:05,640 | INFO     | could have reported an average CPU frequency of 2716 MHz (55 samples)
[2025-11-27 01:22:17] 2025-11-27 06:21:05,640 | INFO     | ..............................
[2025-11-27 01:22:17] 2025-11-27 06:21:05,641 | INFO     | . Timing measurements:
[2025-11-27 01:22:17] 2025-11-27 06:21:05,641 | INFO     | . get job = 0 s
[2025-11-27 01:22:17] 2025-11-27 06:21:05,641 | INFO     | . initial setup = 1 s
[2025-11-27 01:22:17] 2025-11-27 06:21:05,641 | INFO     | . payload setup = 5 s
[2025-11-27 01:22:17] 2025-11-27 06:21:05,641 | INFO     | . stage-in = 0 s
[2025-11-27 01:22:17] 2025-11-27 06:21:05,641 | INFO     | . payload execution = 95915 s
[2025-11-27 01:22:17] 2025-11-27 06:21:05,641 | INFO     | . stage-out = 10 s
[2025-11-27 01:22:17] 2025-11-27 06:21:05,641 | INFO     | . log creation = 3 s
[2025-11-27 01:22:17] 2025-11-27 06:21:05,641 | INFO     | ..............................
[2025-11-27 01:22:17] 2025-11-27 06:21:05,786 | INFO     | time since job start (95997s) is within the limit (172800.0s)
[2025-11-27 01:22:17] 2025-11-27 06:21:05,877 | INFO     | 
[2025-11-27 01:22:17] 2025-11-27 06:21:05,877 | INFO     | job summary report
[2025-11-27 01:22:17] 2025-11-27 06:21:05,877 | INFO     | --------------------------------------------------
[2025-11-27 01:22:17] 2025-11-27 06:21:05,877 | INFO     | PanDA job id: 6896577494
[2025-11-27 01:22:17] 2025-11-27 06:21:05,877 | INFO     | task id: 47556161
[2025-11-27 01:22:17] 2025-11-27 06:21:05,877 | INFO     | errors: (none)
[2025-11-27 01:22:17] 2025-11-27 06:21:05,877 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:22:17] 2025-11-27 06:21:05,877 | INFO     | pilot state: finished 
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | transexitcode: 0
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | exeerrorcode: 0
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | exeerrordiag: 
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | exitcode: 0
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | exitmsg: OK
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | cpuconsumptiontime: 263060 s
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | nevents: 1000
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | neventsw: 0
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | pid: 173856
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | pgrp: 173856
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | corecount: 8
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | event service: False
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | sizes: {0: 2284211, 4: 2284473, 11: 2284501, 95925: 2352556, 95926: 2352555, 95938: 2361633, 95941: 2361817, 95982: 2362063}
[2025-11-27 01:22:17] 2025-11-27 06:21:05,878 | INFO     | --------------------------------------------------
[2025-11-27 01:22:17] 2025-11-27 06:21:05,879 | INFO     | 
[2025-11-27 01:22:17] 2025-11-27 06:21:05,879 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 01:22:17] 2025-11-27 06:21:05,982 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,982 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,983 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,984 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,984 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,984 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,984 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:22:17] 2025-11-27 06:21:05,984 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,984 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:22:17] 2025-11-27 06:21:05,984 | INFO     | job 6896577494 has completed (purged errors)
[2025-11-27 01:22:17] 2025-11-27 06:21:05,984 | INFO     | overall cleanup function is called
[2025-11-27 01:22:17] 2025-11-27 06:21:07,004 | INFO     | --- collectZombieJob: --- 10, [173856]
[2025-11-27 01:22:17] 2025-11-27 06:21:07,004 | INFO     | zombie collector waiting for pid 173856
[2025-11-27 01:22:17] 2025-11-27 06:21:07,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:22:17] 2025-11-27 06:21:07,004 | INFO     | collected zombie processes
[2025-11-27 01:22:17] 2025-11-27 06:21:07,004 | INFO     | will attempt to kill all subprocesses of pid=173856
[2025-11-27 01:22:17] 2025-11-27 06:21:08,921 | INFO     | PID=123596 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 01:22:17] 2025-11-27 06:21:08,926 | INFO     | .. there are 65 such processes running
[2025-11-27 01:22:17] 2025-11-27 06:21:08,947 | INFO     | process IDs to be killed: [173856] (in reverse order)
[2025-11-27 01:22:17] 2025-11-27 06:21:09,235 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:22:17] 2025-11-27 06:21:09,236 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:22:17] 2025-11-27 06:21:09,289 | INFO     | did not find any defunct processes belonging to 173856
[2025-11-27 01:22:17] 2025-11-27 06:21:09,479 | INFO     | did not find any defunct processes belonging to 173856
[2025-11-27 01:22:17] 2025-11-27 06:21:09,539 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:22:17] 2025-11-27 06:21:09,539 | INFO     | ready for new job
[2025-11-27 01:22:17] 2025-11-27 06:21:09,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:22:17] 2025-11-27 06:21:09,597 | INFO     | ***************************************
[2025-11-27 01:22:17] 2025-11-27 06:21:09,597 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:22:17] 2025-11-27 06:21:09,598 | INFO     | ***************************************
[2025-11-27 01:22:17] 2025-11-27 06:21:09,598 | INFO     | 
[2025-11-27 01:22:17] 2025-11-27 06:21:09,628 | INFO     | architecture information:
[2025-11-27 01:22:17] 2025-11-27 06:21:09,632 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:22:17] 2025-11-27 06:21:09,682 | INFO     | cat /etc/os-release:
[2025-11-27 01:22:17] NAME="CentOS Linux"
[2025-11-27 01:22:17] VERSION="7 (Core)"
[2025-11-27 01:22:17] ID="centos"
[2025-11-27 01:22:17] ID_LIKE="rhel fedora"
[2025-11-27 01:22:17] VERSION_ID="7"
[2025-11-27 01:22:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:22:17] ANSI_COLOR="0;31"
[2025-11-27 01:22:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:22:17] HOME_URL="https://www.centos.org/"
[2025-11-27 01:22:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:22:17] 
[2025-11-27 01:22:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:22:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:22:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:22:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:22:17] 
[2025-11-27 01:22:17] 2025-11-27 06:21:09,682 | INFO     | ***************************************
[2025-11-27 01:22:17] 2025-11-27 06:21:10,188 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 01:22:17] 2025-11-27 06:21:10,244 | INFO     | sufficient remaining disk space (89556779008 B)
[2025-11-27 01:22:17] 2025-11-27 06:21:10,244 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:22:17] 2025-11-27 06:21:10,245 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:22:17] 2025-11-27 06:21:10,245 | INFO     | update_server=False
[2025-11-27 01:22:17] 2025-11-27 06:21:10,245 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:22:17] 2025-11-27 06:21:10,333 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:22:17] 2025-11-27 06:21:10,338 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:22:17] 2025-11-27 06:21:10,338 | INFO     | aborting loop
[2025-11-27 01:22:17] 2025-11-27 06:21:10,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:22:17] 2025-11-27 06:21:11,069 | INFO     | all job control threads have been joined
[2025-11-27 01:22:17] 2025-11-27 06:21:11,238 | INFO     | all data control threads have been joined
[2025-11-27 01:22:17] 2025-11-27 06:21:11,251 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:11,339 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:11,344 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:11,421 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:11,457 | INFO     | all payload control threads have been joined
[2025-11-27 01:22:17] 2025-11-27 06:21:11,604 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:11,735 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:11,899 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:11,920 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:22:17] 2025-11-27 06:21:12,020 | INFO     | [job] validate thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:12,022 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:12,075 | INFO     | [job] control thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:12,244 | INFO     | [data] control thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:12,340 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:12,463 | INFO     | [payload] control thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:12,558 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:12,734 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:15,929 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:22:17] 2025-11-27 06:21:43,674 | INFO     | PID=123596 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 01:22:17] 2025-11-27 06:21:43,675 | INFO     | .. there are 66 such processes running
[2025-11-27 01:22:17] 2025-11-27 06:21:43,675 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:22:17] 2025-11-27 06:21:43,676 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:22:17] 2025-11-27 06:21:43,676 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:22:17] 2025-11-27 06:22:09,099 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:22:17] 2025-11-27 06:22:10,531 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140496092075840)>', '<ExcThread(monitor, started 140495602829056)>']
[2025-11-27 01:22:17] 2025-11-27 06:22:10,862 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:22:17] 2025-11-27 06:22:10,862 | INFO     | [monitor] control thread has ended
[2025-11-27 01:22:17] 2025-11-27 06:22:15,557 | INFO     | all workflow threads have been joined
[2025-11-27 01:22:17] 2025-11-27 06:22:15,557 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:22:17] 2025-11-27 06:22:15,557 | INFO     | traces error code: 0
[2025-11-27 01:22:17] 2025-11-27 06:22:15,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:22:17] 2025-11-27 06:22:16,025 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:22:17] 2025-11-27 06:22:16,030 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:22:17] 2025-11-27 06:22:16,035 [wrapper] pilotpid: 123596
[2025-11-27 01:22:17] 2025-11-27 06:22:16,044 [wrapper] Pilot exit status: 0
[2025-11-27 01:22:17] 2025-11-27 06:22:16,149 [wrapper] pandaids: 6896577494 6896577494
[2025-11-27 01:22:17] 2025-11-27 06:22:16,360 [wrapper] cleanup supervisor_pilot 4193866 123597
[2025-11-27 01:22:17] 2025-11-27 06:22:16,385 [wrapper] Test setup, not cleaning
[2025-11-27 01:22:17] 2025-11-27 06:22:16,407 [wrapper] apfmon messages muted
[2025-11-27 01:22:17] 2025-11-27 06:22:16,430 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:22:17] 2025-11-27 06:22:16,442 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:22:17]  *** Error codes and diagnostics ***
[2025-11-27 01:22:17]     "exeErrorCode": 0,
[2025-11-27 01:22:17]     "exeErrorDiag": "",
[2025-11-27 01:22:17]     "pilotErrorCode": 0,
[2025-11-27 01:22:17]     "pilotErrorDiag": "",
[2025-11-27 01:22:17]  *** Listing of results directory ***
[2025-11-27 01:22:17] total 1734832
[2025-11-27 01:22:17] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:11 queuedata.json
[2025-11-27 01:22:17] -rwx------. 1 boincer umatlas     36292 Nov 25 00:11 runpilot2-wrapper.sh
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:22:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:41 run_atlas
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:41 job.xml
[2025-11-27 01:22:17] -rw-r--r--. 3 boincer umatlas 410625898 Nov 25 19:41 EVNT.47483658._002091.pool.root.1
[2025-11-27 01:22:17] -rw-r--r--. 3 boincer umatlas 410625898 Nov 25 19:41 ATLAS.root_0
[2025-11-27 01:22:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:41 start_atlas.sh
[2025-11-27 01:22:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:41 shared
[2025-11-27 01:22:17] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 19:41 input.tar.gz
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:41 boinc_lockfile
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 22:40 pandaJob.out
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas        57 Nov 25 22:40 setup.sh.local
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas    991877 Nov 25 22:41 agis_schedconf.cvmfs.json
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas       533 Nov 27 01:05 boinc_task_state.xml
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas 924745303 Nov 27 01:18 HITS.47556161._000750.pool.root.1
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas      1069 Nov 27 01:20 memory_monitor_summary.json
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas   1516240 Nov 27 01:20 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas   2455636 Nov 27 01:20 log.47556161._000750.job.log.tgz.1
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas      6879 Nov 27 01:20 init_data.xml
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas      8653 Nov 27 01:21 heartbeat.json
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas        95 Nov 27 01:21 pilot_heartbeat.json
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas        29 Nov 27 01:21 wrapper_checkpoint.txt
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 01:21 boinc_mmap_file
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas      4823 Nov 27 01:22 pilotlog.txt
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas  10815045 Nov 27 01:22 log.47556161._000750.job.log.1
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas       353 Nov 27 01:22 output.list
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas       620 Nov 27 01:22 runtime_log
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas  13291520 Nov 27 01:22 result.tar.gz
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas      9438 Nov 27 01:22 runtime_log.err
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas       792 Nov 27 01:22 e23KDmmV0h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLLJKDmykGDMm.diag
[2025-11-27 01:22:17] -rw-r--r--. 1 boincer umatlas     23672 Nov 27 01:22 stderr.txt
[2025-11-27 01:22:17] HITS file was successfully produced:
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas 924745303 Nov 27 01:18 shared/HITS.pool.root.1
[2025-11-27 01:22:17]  *** Contents of shared directory: ***
[2025-11-27 01:22:17] total 1317660
[2025-11-27 01:22:17] -rw-r--r--. 3 boincer umatlas 410625898 Nov 25 19:41 ATLAS.root_0
[2025-11-27 01:22:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:41 start_atlas.sh
[2025-11-27 01:22:17] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 19:41 input.tar.gz
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas 924745303 Nov 27 01:18 HITS.pool.root.1
[2025-11-27 01:22:17] -rw-------. 1 boincer umatlas  13291520 Nov 27 01:22 result.tar.gz
01:22:18 (92904): run_atlas exited; CPU time 267596.920060
01:22:18 (92904): called boinc_finish(0)

</stderr_txt>
]]>

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