Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:16:17 (4019999): wrapper (7.7.26015): starting
16:16:17 (4019999): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 16:16:17] Arguments: --nthreads 12
[2025-11-25 16:16:17] Threads: 12
[2025-11-25 16:16:17] Checking for CVMFS
[2025-11-25 16:16:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:16:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:16:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:16:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:16:18] 2.11.5.0 538441 27326 309488 153302 0 653 32482051 45568001 24150 130560 0 226360023 99.797 137226613 26271 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 16:16:18] CVMFS is ok
[2025-11-25 16:16:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:16:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:16:18] Further information can be found at the LHC@home message board.
[2025-11-25 16:16:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:16:18] Checking for apptainer binary...
[2025-11-25 16:16:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:16:18] Running /usr/bin/apptainer --version
[2025-11-25 16:16:18] apptainer version 1.4.1-1.el9
[2025-11-25 16:16:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:16:18] wns0030.triumf.lcg
[2025-11-25 16:16:18] apptainer works
[2025-11-25 16:16:18] Set ATHENA_PROC_NUMBER=12
[2025-11-25 16:16:18] Set ATHENA_CORE_NUMBER=12
[2025-11-25 16:16:18] Starting ATLAS job with PandaID=6891558442
[2025-11-25 16:16:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 16:21:39]  *** The last 200 lines of the pilot log: ***
[2025-11-25 16:21:39] 2025-11-26 00:20:38,770 | INFO     | could have reported an average CPU frequency of 2081 MHz (4 samples)
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | ..............................
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . Timing measurements:
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . get job = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . initial setup = 3 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . payload setup = 9 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . stage-in = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . payload execution = 79 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . stage-out = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . log creation = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | ..............................
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891558442/pilotlog.txt
[2025-11-25 16:21:39] 2025-11-26 00:20:38,808 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 16:21:39] - Log from pilotlog.txt -
[2025-11-25 16:21:39] 2025-11-26 00:20:38,762 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891558442/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 16:21:39] 2025-11-26 00:20:38,768 | INFO     | extracted standard info from prmon json
[2025-11-25 16:21:39] 2025-11-26 00:20:38,768 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 16:21:39] 2025-11-26 00:20:38,769 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 16:21:39] 2025-11-26 00:20:38,769 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 16:21:39] 2025-11-26 00:20:38,769 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 16:21:39] 2025-11-26 00:20:38,769 | WARNING  | wrong length of table data, x=[1764116227.0, 1764116288.0], y=[1674.0, 672609.0] (must be same and length>=4)
[2025-11-25 16:21:39] 2025-11-26 00:20:38,770 | INFO     | could have reported an average CPU frequency of 2081 MHz (4 samples)
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | ..............................
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . Timing measurements:
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . get job = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . initial setup = 3 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . payload setup = 9 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . stage-in = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . payload execution = 79 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . stage-out = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . log creation = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | ..............................
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891558442/pilotlog.txt
[2025-11-25 16:21:39] 2025-11-26 00:20:38,809 | WARNING  | 
[2025-11-25 16:21:39] [begin log extracts]
[2025-11-25 16:21:39] - Log from pilotlog.txt -
[2025-11-25 16:21:39] 2025-11-26 00:20:38,762 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891558442/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 16:21:39] 2025-11-26 00:20:38,768 | INFO     | extracted standard info from prmon json
[2025-11-25 16:21:39] 2025-11-26 00:20:38,768 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 16:21:39] 2025-11-26 00:20:38,769 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 16:21:39] 2025-11-26 00:20:38,769 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 16:21:39] 2025-11-26 00:20:38,769 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 16:21:39] 2025-11-26 00:20:38,769 | WARNING  | wrong length of table data, x=[1764116227.0, 1764116288.0], y=[1674.0, 672609.0] (must be same and length>=4)
[2025-11-25 16:21:39] 2025-11-26 00:20:38,770 | INFO     | could have reported an average CPU frequency of 2081 MHz (4 samples)
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | ..............................
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . Timing measurements:
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . get job = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . initial setup = 3 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . payload setup = 9 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . stage-in = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . payload execution = 79 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . stage-out = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | . log creation = 0 s
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | ..............................
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 16:21:39] 2025-11-26 00:20:38,771 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891558442/pilotlog.txt
[2025-11-25 16:21:39] [end log extracts]
[2025-11-25 16:21:39] 2025-11-26 00:20:38,809 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 16:21:39] 2025-11-26 00:20:38,810 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 16:21:39] 2025-11-26 00:20:39,450 | INFO     | 
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | job summary report
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | --------------------------------------------------
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | PanDA job id: 6891558442
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | task id: 47493068
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 16:18:14,516 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | pilot state: failed 
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | transexitcode: 65
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | exeerrorcode: 65
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 16:21:39] 2025-11-26 00:20:39,451 | INFO     | exitcode: 65
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | cpuconsumptiontime: 52 s
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | nevents: 0
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | neventsw: 0
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | pid: 4030325
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | pgrp: 4030325
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | corecount: 12
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | event service: False
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | sizes: {0: 2284297, 6: 2284559, 11: 2284587, 92: 2309971, 94: 2314261, 97: 2314289, 229: 2314583}
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | --------------------------------------------------
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | 
[2025-11-25 16:21:39] 2025-11-26 00:20:39,452 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 16:21:39] 2025-11-26 00:20:39,483 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,484 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,485 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 16:21:39] 2025-11-26 00:20:39,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,485 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 16:21:39] 2025-11-26 00:20:39,485 | INFO     | job 6891558442 has completed (purged errors)
[2025-11-25 16:21:39] 2025-11-26 00:20:39,485 | INFO     | overall cleanup function is called
[2025-11-25 16:21:39] 2025-11-26 00:20:39,755 | INFO     | PID=4023714 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 16:21:39] 2025-11-26 00:20:39,755 | INFO     | .. there are 35 such processes running
[2025-11-25 16:21:39] 2025-11-26 00:20:40,496 | INFO     | --- collectZombieJob: --- 10, [4030325]
[2025-11-25 16:21:39] 2025-11-26 00:20:40,496 | INFO     | zombie collector waiting for pid 4030325
[2025-11-25 16:21:39] 2025-11-26 00:20:40,496 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 16:21:39] 2025-11-26 00:20:40,496 | INFO     | collected zombie processes
[2025-11-25 16:21:39] 2025-11-26 00:20:40,496 | INFO     | will attempt to kill all subprocesses of pid=4030325
[2025-11-25 16:21:39] 2025-11-26 00:20:40,750 | INFO     | process IDs to be killed: [4030325] (in reverse order)
[2025-11-25 16:21:39] 2025-11-26 00:20:40,847 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 16:21:39] 2025-11-26 00:20:40,847 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 16:21:39] 2025-11-26 00:20:40,857 | INFO     | did not find any defunct processes belonging to 4030325
[2025-11-25 16:21:39] 2025-11-26 00:20:40,867 | INFO     | did not find any defunct processes belonging to 4030325
[2025-11-25 16:21:39] 2025-11-26 00:20:40,868 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 16:21:39] 2025-11-26 00:20:40,868 | INFO     | ready for new job
[2025-11-25 16:21:39] 2025-11-26 00:20:40,868 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 16:21:39] 2025-11-26 00:20:40,869 | INFO     | ***************************************
[2025-11-25 16:21:39] 2025-11-26 00:20:40,869 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 16:21:39] 2025-11-26 00:20:40,869 | INFO     | ***************************************
[2025-11-25 16:21:39] 2025-11-26 00:20:40,869 | INFO     | 
[2025-11-25 16:21:39] 2025-11-26 00:20:40,872 | INFO     | architecture information:
[2025-11-25 16:21:39] 2025-11-26 00:20:40,873 | INFO     | executing command: cat /etc/os-release
[2025-11-25 16:21:39] 2025-11-26 00:20:40,886 | INFO     | cat /etc/os-release:
[2025-11-25 16:21:39] NAME="CentOS Linux"
[2025-11-25 16:21:39] VERSION="7 (Core)"
[2025-11-25 16:21:39] ID="centos"
[2025-11-25 16:21:39] ID_LIKE="rhel fedora"
[2025-11-25 16:21:39] VERSION_ID="7"
[2025-11-25 16:21:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 16:21:39] ANSI_COLOR="0;31"
[2025-11-25 16:21:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 16:21:39] HOME_URL="https://www.centos.org/"
[2025-11-25 16:21:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 16:21:39] 
[2025-11-25 16:21:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 16:21:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 16:21:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 16:21:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 16:21:39] 
[2025-11-25 16:21:39] 2025-11-26 00:20:40,887 | INFO     | ***************************************
[2025-11-25 16:21:39] 2025-11-26 00:20:41,390 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 16:21:39] 2025-11-26 00:20:41,434 | INFO     | sufficient remaining disk space (1782731243520 B)
[2025-11-25 16:21:39] 2025-11-26 00:20:41,435 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 16:21:39] 2025-11-26 00:20:41,435 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 16:21:39] 2025-11-26 00:20:41,435 | INFO     | update_server=False
[2025-11-25 16:21:39] 2025-11-26 00:20:41,435 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 16:21:39] 2025-11-26 00:20:41,593 | INFO     | all job control threads have been joined
[2025-11-25 16:21:39] 2025-11-26 00:20:42,087 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:21:39] 2025-11-26 00:20:42,087 | INFO     | aborting loop
[2025-11-25 16:21:39] 2025-11-26 00:20:42,181 | INFO     | all data control threads have been joined
[2025-11-25 16:21:39] 2025-11-26 00:20:42,361 | INFO     | all payload control threads have been joined
[2025-11-25 16:21:39] 2025-11-26 00:20:42,425 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 16:21:39] 2025-11-26 00:20:42,441 | INFO     | [job] retrieve thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:42,599 | INFO     | [job] control thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:42,988 | INFO     | [payload] failed_post thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:43,052 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:43,092 | INFO     | [job] job monitor thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:43,187 | INFO     | [data] control thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:43,367 | INFO     | [payload] control thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:43,401 | INFO     | [payload] validate_post thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:43,427 | INFO     | [job] validate thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:43,431 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:43,585 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:43,866 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:43,908 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 16:21:39] 2025-11-26 00:20:43,926 | INFO     | [data] copytool_in thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:44,155 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:21:39] 2025-11-26 00:20:44,440 | INFO     | [data] copytool_out thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:45,161 | INFO     | [job] queue monitor thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:20:47,917 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 16:21:39] 2025-11-26 00:21:12,189 | INFO     | PID=4023714 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 16:21:39] 2025-11-26 00:21:12,189 | INFO     | .. there are 35 such processes running
[2025-11-25 16:21:39] 2025-11-26 00:21:12,189 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 16:21:39] 2025-11-26 00:21:12,189 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 16:21:39] 2025-11-26 00:21:12,189 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 16:21:39] 2025-11-26 00:21:32,344 | INFO     | [monitor] cgroup control has ended
[2025-11-25 16:21:39] 2025-11-26 00:21:33,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140210937657152)>', '<ExcThread(monitor, started 140210415335168)>']
[2025-11-25 16:21:39] 2025-11-26 00:21:34,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 16:21:39] 2025-11-26 00:21:34,329 | INFO     | [monitor] control thread has ended
[2025-11-25 16:21:39] 2025-11-26 00:21:38,847 | INFO     | all workflow threads have been joined
[2025-11-25 16:21:39] 2025-11-26 00:21:38,847 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 16:21:39] 2025-11-26 00:21:38,848 | INFO     | traces error code: 0
[2025-11-25 16:21:39] 2025-11-26 00:21:38,849 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 16:21:39] 2025-11-26 00:21:39,132 [wrapper] ==== pilot stdout END ====
[2025-11-25 16:21:39] 2025-11-26 00:21:39,147 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 16:21:39] 2025-11-26 00:21:39,158 [wrapper] pilotpid: 4023714
[2025-11-25 16:21:39] 2025-11-26 00:21:39,175 [wrapper] Pilot exit status: 0
[2025-11-25 16:21:39] 2025-11-26 00:21:39,258 [wrapper] pandaids: 6891558442
[2025-11-25 16:21:39] 2025-11-26 00:21:39,438 [wrapper] cleanup supervisor_pilot 4023720 4023715
[2025-11-25 16:21:39] 2025-11-26 00:21:39,441 [wrapper] Test setup, not cleaning
[2025-11-25 16:21:39] 2025-11-26 00:21:39,462 [wrapper] apfmon messages muted
[2025-11-25 16:21:39] 2025-11-26 00:21:39,474 [wrapper] ==== wrapper stdout END ====
[2025-11-25 16:21:39] 2025-11-26 00:21:39,478 [wrapper] ==== wrapper stderr END ====
[2025-11-25 16:21:39]  *** Error codes and diagnostics ***
[2025-11-25 16:21:39]     "exeErrorCode": 65,
[2025-11-25 16:21:39]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 16:21:39]     "pilotErrorCode": 1305,
[2025-11-25 16:21:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 16:21:39]  *** Listing of results directory ***
[2025-11-25 16:21:39] total 401616
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc    576529 Nov 18 07:15 pilot3.tar.gz
[2025-11-25 16:21:39] -rwx------. 1 boinc boinc     36292 Nov 18 07:24 runpilot2-wrapper.sh
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc      5112 Nov 18 07:24 queuedata.json
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc       100 Nov 25 16:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 16:21:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 16:16 run_atlas
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc       105 Nov 25 16:16 job.xml
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc      6590 Nov 25 16:16 init_data.xml
[2025-11-25 16:21:39] -rw-r--r--. 2 boinc boinc 407032368 Nov 25 16:16 EVNT.47493065._000060.pool.root.1
[2025-11-25 16:21:39] -rw-r--r--. 2 boinc boinc     15120 Nov 25 16:16 start_atlas.sh
[2025-11-25 16:21:39] drwxrwx--x. 2 boinc boinc      4096 Nov 25 16:16 shared
[2025-11-25 16:21:39] -rw-r--r--. 2 boinc boinc    590096 Nov 25 16:16 input.tar.gz
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc         0 Nov 25 16:16 boinc_lockfile
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc      2771 Nov 25 16:16 pandaJob.out
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc    991877 Nov 25 16:16 agis_schedconf.cvmfs.json
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc   1516240 Nov 25 16:16 agis_ddmendpoints.agis.ALL.json
[2025-11-25 16:21:39] drwx------. 5 boinc boinc      4096 Nov 25 16:16 pilot3
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc       523 Nov 25 16:17 boinc_task_state.xml
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc      1000 Nov 25 16:18 memory_monitor_summary.json
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc     49217 Nov 25 16:18 log.47493068._000598.job.log.tgz.1
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc        95 Nov 25 16:20 pilot_heartbeat.json
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc     10333 Nov 25 16:20 heartbeat.json
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc      8192 Nov 25 16:21 boinc_mmap_file
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc        23 Nov 25 16:21 wrapper_checkpoint.txt
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc      4823 Nov 25 16:21 pilotlog.txt
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc     99105 Nov 25 16:21 log.47493068._000598.job.log.1
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc       186 Nov 25 16:21 output.list
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc       620 Nov 25 16:21 runtime_log
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc    174080 Nov 25 16:21 result.tar.gz
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc       646 Nov 25 16:21 TNQLDmckcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJMFKDmCzYMsm.diag
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc      8528 Nov 25 16:21 runtime_log.err
[2025-11-25 16:21:39] -rw-r--r--. 1 boinc boinc     21800 Nov 25 16:21 stderr.txt
[2025-11-25 16:21:39] No HITS result produced
[2025-11-25 16:21:39]  *** Contents of shared directory: ***
[2025-11-25 16:21:39] total 398268
[2025-11-25 16:21:39] -rw-r--r--. 2 boinc boinc 407032368 Nov 25 16:16 ATLAS.root_0
[2025-11-25 16:21:39] -rw-r--r--. 2 boinc boinc     15120 Nov 25 16:16 start_atlas.sh
[2025-11-25 16:21:39] -rw-r--r--. 2 boinc boinc    590096 Nov 25 16:16 input.tar.gz
[2025-11-25 16:21:39] -rw-------. 1 boinc boinc    174080 Nov 25 16:21 result.tar.gz
16:21:41 (4019999): run_atlas exited; CPU time 52.531664
16:21:41 (4019999): called boinc_finish(0)

</stderr_txt>
]]>

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