Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:20:58 (2424324): wrapper (7.7.26015): starting
22:20:58 (2424324): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:20:58] Arguments: --nthreads 8
[2025-11-25 22:20:58] Threads: 8
[2025-11-25 22:20:58] Checking for CVMFS
[2025-11-25 22:20:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:20:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:20:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:21:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:21:00] 2.13.3.0 12388 29456 220432 153307 2 104 16896399 32935936 34887 16776704 0 117726018 99.495 139213113 36399 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:21:00] CVMFS is ok
[2025-11-25 22:21:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:21:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:21:00] Further information can be found at the LHC@home message board.
[2025-11-25 22:21:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:21:00] Checking for apptainer binary...
[2025-11-25 22:21:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:21:00] Running /usr/bin/apptainer --version
[2025-11-25 22:21:00] apptainer version 1.4.4-1.el9
[2025-11-25 22:21:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:21:01] c7-4-31.aglt2.org
[2025-11-25 22:21:01] apptainer works
[2025-11-25 22:21:01] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:21:01] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:21:01] Starting ATLAS job with PandaID=6895884162
[2025-11-25 22:21:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:49:11]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:49:11] 2025-11-27 04:48:03,426 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:49:11] 2025-11-27 04:48:04,149 | INFO     | time since job start (91545s) is within the limit (172800.0s)
[2025-11-26 23:49:11] 2025-11-27 04:48:05,943 | INFO     | monitor loop #5224: job 0:6895884162 is in state 'finished'
[2025-11-26 23:49:11] 2025-11-27 04:48:05,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:49:11] 2025-11-27 04:48:06,160 | INFO     | time since job start (91547s) is within the limit (172800.0s)
[2025-11-26 23:49:11] 2025-11-27 04:48:08,170 | INFO     | time since job start (91549s) is within the limit (172800.0s)
[2025-11-26 23:49:11] 2025-11-27 04:48:08,446 | INFO     | monitor loop #5225: job 0:6895884162 is in state 'finished'
[2025-11-26 23:49:11] 2025-11-27 04:48:08,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:49:11] 2025-11-27 04:48:10,185 | INFO     | time since job start (91551s) is within the limit (172800.0s)
[2025-11-26 23:49:11] 2025-11-27 04:48:10,952 | INFO     | monitor loop #5226: job 0:6895884162 is in state 'finished'
[2025-11-26 23:49:11] 2025-11-27 04:48:10,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:49:11] 2025-11-27 04:48:13,499 | INFO     | monitor loop #5227: job 0:6895884162 is in state 'finished'
[2025-11-26 23:49:11] 2025-11-27 04:48:13,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:49:11] 2025-11-27 04:48:15,372 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:49:11] 2025-11-27 04:48:15,381 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3090.2710625000004
[2025-11-26 23:49:11] 2025-11-27 04:48:15,554 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895884162/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:49:11] 2025-11-27 04:48:15,555 | INFO     | extracted standard info from prmon json
[2025-11-26 23:49:11] 2025-11-27 04:48:15,555 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:49:11] 2025-11-27 04:48:15,555 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:49:11] 2025-11-27 04:48:15,793 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:49:11] 2025-11-27 04:48:15,795 | INFO     | sum of square deviations: 1042358039383.2052
[2025-11-26 23:49:11] 2025-11-27 04:48:16,101 | INFO     | monitor loop #5228: job 0:6895884162 is in state 'finished'
[2025-11-26 23:49:11] 2025-11-27 04:48:16,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:49:11] 2025-11-27 04:48:16,249 | INFO     | sum of deviations: 5409630411882.981
[2025-11-26 23:49:11] 2025-11-27 04:48:16,249 | INFO     | mean x: 1764173153.1502004
[2025-11-26 23:49:11] 2025-11-27 04:48:16,249 | INFO     | mean y: 2819979.715620828
[2025-11-26 23:49:11] 2025-11-27 04:48:16,249 | INFO     | intersect: -9152886966.005266
[2025-11-26 23:49:11] 2025-11-27 04:48:16,275 | INFO     | chi2: 38.059495416957375
[2025-11-26 23:49:11] 2025-11-27 04:48:16,276 | INFO     | sum of square deviations: 1031955713498.5834
[2025-11-26 23:49:11] 2025-11-27 04:48:16,698 | INFO     | sum of deviations: 5858906684393.512
[2025-11-26 23:49:11] 2025-11-27 04:48:16,699 | INFO     | mean x: 1764173000.6523778
[2025-11-26 23:49:11] 2025-11-27 04:48:16,699 | INFO     | mean y: 2826565.7582049565
[2025-11-26 23:49:11] 2025-11-27 04:48:16,699 | INFO     | intersect: -10013228242.356354
[2025-11-26 23:49:11] 2025-11-27 04:48:16,700 | INFO     | chi2: 35.11130090790961
[2025-11-26 23:49:11] 2025-11-27 04:48:16,700 | INFO     | current chi2=35.11130090790961 (change=7.7462784956791655 %)
[2025-11-26 23:49:11] 2025-11-27 04:48:16,744 | INFO     | right removable region: 1492
[2025-11-26 23:49:11] 2025-11-27 04:48:16,750 | INFO     | sum of square deviations: 1031955119358.5839
[2025-11-26 23:49:11] 2025-11-27 04:48:17,716 | INFO     | sum of deviations: 4799101192092.849
[2025-11-26 23:49:11] 2025-11-27 04:48:17,716 | INFO     | mean x: 1764173305.6523778
[2025-11-26 23:49:11] 2025-11-27 04:48:17,716 | INFO     | mean y: 2828929.0709979907
[2025-11-26 23:49:11] 2025-11-27 04:48:17,716 | INFO     | intersect: -8201448616.910909
[2025-11-26 23:49:11] 2025-11-27 04:48:17,718 | INFO     | chi2: 33.6221738284235
[2025-11-26 23:49:11] 2025-11-27 04:48:17,718 | INFO     | current chi2=33.6221738284235 (change=11.658908085672707 %)
[2025-11-26 23:49:11] 2025-11-27 04:48:17,718 | INFO     | left removable region: 10
[2025-11-26 23:49:11] 2025-11-27 04:48:17,767 | INFO     | sum of square deviations: 1009313520756.3684
[2025-11-26 23:49:11] 2025-11-27 04:48:18,303 | INFO     | sum of deviations: 4809484611197.038
[2025-11-26 23:49:11] 2025-11-27 04:48:18,304 | INFO     | mean x: 1764173275.15722
[2025-11-26 23:49:11] 2025-11-27 04:48:18,304 | INFO     | mean y: 2844726.360323887
[2025-11-26 23:49:11] 2025-11-27 04:48:18,304 | INFO     | intersect: -8403625655.603189
[2025-11-26 23:49:11] 2025-11-27 04:48:18,305 | INFO     | chi2: 26.88388333825757
[2025-11-26 23:49:11] 2025-11-27 04:48:18,306 | INFO     | current memory leak: 4.77 B/s (using 1482 data points, chi2=26.88)
[2025-11-26 23:49:11] 2025-11-27 04:48:18,307 | INFO     | could have reported an average CPU frequency of 3145 MHz (54 samples)
[2025-11-26 23:49:11] 2025-11-27 04:48:18,307 | INFO     | ..............................
[2025-11-26 23:49:11] 2025-11-27 04:48:18,307 | INFO     | . Timing measurements:
[2025-11-26 23:49:11] 2025-11-27 04:48:18,307 | INFO     | . get job = 0 s
[2025-11-26 23:49:11] 2025-11-27 04:48:18,307 | INFO     | . initial setup = 8 s
[2025-11-26 23:49:11] 2025-11-27 04:48:18,307 | INFO     | . payload setup = 46 s
[2025-11-26 23:49:11] 2025-11-27 04:48:18,307 | INFO     | . stage-in = 0 s
[2025-11-26 23:49:11] 2025-11-27 04:48:18,333 | INFO     | . payload execution = 91392 s
[2025-11-26 23:49:11] 2025-11-27 04:48:18,333 | INFO     | . stage-out = 13 s
[2025-11-26 23:49:11] 2025-11-27 04:48:18,333 | INFO     | . log creation = 1 s
[2025-11-26 23:49:11] 2025-11-27 04:48:18,333 | INFO     | ..............................
[2025-11-26 23:49:11] 2025-11-27 04:48:19,493 | INFO     | 
[2025-11-26 23:49:11] 2025-11-27 04:48:19,499 | INFO     | job summary report
[2025-11-26 23:49:11] 2025-11-27 04:48:19,500 | INFO     | --------------------------------------------------
[2025-11-26 23:49:11] 2025-11-27 04:48:19,500 | INFO     | PanDA job id: 6895884162
[2025-11-26 23:49:11] 2025-11-27 04:48:19,500 | INFO     | task id: 47556149
[2025-11-26 23:49:11] 2025-11-27 04:48:19,500 | INFO     | errors: (none)
[2025-11-26 23:49:11] 2025-11-27 04:48:19,500 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:49:11] 2025-11-27 04:48:19,500 | INFO     | pilot state: finished 
[2025-11-26 23:49:11] 2025-11-27 04:48:19,500 | INFO     | transexitcode: 0
[2025-11-26 23:49:11] 2025-11-27 04:48:19,500 | INFO     | exeerrorcode: 0
[2025-11-26 23:49:11] 2025-11-27 04:48:19,500 | INFO     | exeerrordiag: 
[2025-11-26 23:49:11] 2025-11-27 04:48:19,500 | INFO     | exitcode: 0
[2025-11-26 23:49:11] 2025-11-27 04:48:19,500 | INFO     | exitmsg: OK
[2025-11-26 23:49:11] 2025-11-27 04:48:19,501 | INFO     | cpuconsumptiontime: 205084 s
[2025-11-26 23:49:11] 2025-11-27 04:48:19,501 | INFO     | nevents: 1000
[2025-11-26 23:49:11] 2025-11-27 04:48:19,501 | INFO     | neventsw: 0
[2025-11-26 23:49:11] 2025-11-27 04:48:19,501 | INFO     | pid: 2447297
[2025-11-26 23:49:11] 2025-11-27 04:48:19,501 | INFO     | pgrp: 2447297
[2025-11-26 23:49:11] 2025-11-27 04:48:19,501 | INFO     | corecount: 8
[2025-11-26 23:49:11] 2025-11-27 04:48:19,501 | INFO     | event service: False
[2025-11-26 23:49:11] 2025-11-27 04:48:19,501 | INFO     | sizes: {0: 2283436, 1: 2284292, 2: 2284292, 12: 2284320, 23: 2284348, 34: 2284376, 37: 2284794, 45: 2284822, 91444: 2352478, 91446: 2352477, 91460: 2361527, 91463:
[2025-11-26 23:49:11] 2025-11-27 04:48:19,501 | INFO     | --------------------------------------------------
[2025-11-26 23:49:11] 2025-11-27 04:48:19,501 | INFO     | 
[2025-11-26 23:49:11] 2025-11-27 04:48:19,501 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 23:49:11] 2025-11-27 04:48:19,669 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,669 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,669 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,669 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,669 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,669 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,670 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:49:11] 2025-11-27 04:48:19,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,671 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:49:11] 2025-11-27 04:48:19,671 | INFO     | job 6895884162 has completed (purged errors)
[2025-11-26 23:49:11] 2025-11-27 04:48:19,671 | INFO     | overall cleanup function is called
[2025-11-26 23:49:11] 2025-11-27 04:48:20,850 | INFO     | --- collectZombieJob: --- 10, [2447297]
[2025-11-26 23:49:11] 2025-11-27 04:48:20,851 | INFO     | zombie collector waiting for pid 2447297
[2025-11-26 23:49:11] 2025-11-27 04:48:20,851 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:49:11] 2025-11-27 04:48:20,851 | INFO     | collected zombie processes
[2025-11-26 23:49:11] 2025-11-27 04:48:20,851 | INFO     | will attempt to kill all subprocesses of pid=2447297
[2025-11-26 23:49:11] 2025-11-27 04:48:20,957 | INFO     | PID=2429493 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:49:11] 2025-11-27 04:48:20,957 | INFO     | .. there are 48 such processes running
[2025-11-26 23:49:11] 2025-11-27 04:48:24,639 | INFO     | process IDs to be killed: [2447297] (in reverse order)
[2025-11-26 23:49:11] 2025-11-27 04:48:25,257 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:49:11] 2025-11-27 04:48:25,258 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:49:11] 2025-11-27 04:48:25,284 | INFO     | did not find any defunct processes belonging to 2447297
[2025-11-26 23:49:11] 2025-11-27 04:48:25,310 | INFO     | did not find any defunct processes belonging to 2447297
[2025-11-26 23:49:11] 2025-11-27 04:48:25,315 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:49:11] 2025-11-27 04:48:25,315 | INFO     | ready for new job
[2025-11-26 23:49:11] 2025-11-27 04:48:25,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:49:11] 2025-11-27 04:48:25,349 | INFO     | ***************************************
[2025-11-26 23:49:11] 2025-11-27 04:48:25,349 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:49:11] 2025-11-27 04:48:25,349 | INFO     | ***************************************
[2025-11-26 23:49:11] 2025-11-27 04:48:25,349 | INFO     | 
[2025-11-26 23:49:11] 2025-11-27 04:48:25,355 | INFO     | architecture information:
[2025-11-26 23:49:11] 2025-11-27 04:48:25,364 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:49:11] 2025-11-27 04:48:25,383 | INFO     | cat /etc/os-release:
[2025-11-26 23:49:11] NAME="CentOS Linux"
[2025-11-26 23:49:11] VERSION="7 (Core)"
[2025-11-26 23:49:11] ID="centos"
[2025-11-26 23:49:11] ID_LIKE="rhel fedora"
[2025-11-26 23:49:11] VERSION_ID="7"
[2025-11-26 23:49:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:49:11] ANSI_COLOR="0;31"
[2025-11-26 23:49:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:49:11] HOME_URL="https://www.centos.org/"
[2025-11-26 23:49:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:49:11] 
[2025-11-26 23:49:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:49:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:49:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:49:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:49:11] 
[2025-11-26 23:49:11] 2025-11-27 04:48:25,384 | INFO     | ***************************************
[2025-11-26 23:49:11] 2025-11-27 04:48:25,888 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 23:49:11] 2025-11-27 04:48:25,960 | INFO     | sufficient remaining disk space (66768076800 B)
[2025-11-26 23:49:11] 2025-11-27 04:48:25,963 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:49:11] 2025-11-27 04:48:25,964 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:49:11] 2025-11-27 04:48:25,964 | INFO     | update_server=False
[2025-11-26 23:49:11] 2025-11-27 04:48:25,964 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:49:11] 2025-11-27 04:48:25,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:49:11] 2025-11-27 04:48:25,964 | INFO     | aborting loop
[2025-11-26 23:49:11] 2025-11-27 04:48:25,965 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:49:11] 2025-11-27 04:48:26,321 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:49:11] 2025-11-27 04:48:26,701 | INFO     | all payload control threads have been joined
[2025-11-26 23:49:11] 2025-11-27 04:48:26,970 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:26,971 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:27,042 | INFO     | all data control threads have been joined
[2025-11-26 23:49:11] 2025-11-27 04:48:27,134 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:27,255 | INFO     | all job control threads have been joined
[2025-11-26 23:49:11] 2025-11-27 04:48:27,496 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:27,509 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:27,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:27,649 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:27,657 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:27,706 | INFO     | [payload] control thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:27,737 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:27,972 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:28,048 | INFO     | [data] control thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:28,188 | INFO     | [job] validate thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:28,265 | INFO     | [job] control thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:28,619 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:49:11] 2025-11-27 04:48:29,626 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:48:30,330 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:49:11] 2025-11-27 04:49:01,097 | INFO     | PID=2429493 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:49:11] 2025-11-27 04:49:01,097 | INFO     | .. there are 47 such processes running
[2025-11-26 23:49:11] 2025-11-27 04:49:01,178 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:49:11] 2025-11-27 04:49:01,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:49:11] 2025-11-27 04:49:01,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:49:11] 2025-11-27 04:49:01,261 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:49:11] 2025-11-27 04:49:02,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398125258560)>', '<ExcThread(monitor, started 140397489669888)>']
[2025-11-26 23:49:11] 2025-11-27 04:49:03,191 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:49:11] 2025-11-27 04:49:03,192 | INFO     | [monitor] control thread has ended
[2025-11-26 23:49:11] 2025-11-27 04:49:07,584 | INFO     | all workflow threads have been joined
[2025-11-26 23:49:11] 2025-11-27 04:49:07,585 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:49:11] 2025-11-27 04:49:07,668 | INFO     | traces error code: 0
[2025-11-26 23:49:11] 2025-11-27 04:49:07,669 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:49:11] 2025-11-27 04:49:10,107 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:49:11] 2025-11-27 04:49:10,123 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:49:11] 2025-11-27 04:49:10,148 [wrapper] pilotpid: 2429493
[2025-11-26 23:49:11] 2025-11-27 04:49:10,180 [wrapper] Pilot exit status: 0
[2025-11-26 23:49:11] 2025-11-27 04:49:10,281 [wrapper] pandaids: 6895884162
[2025-11-26 23:49:11] 2025-11-27 04:49:10,672 [wrapper] cleanup supervisor_pilot 1692911 2429494
[2025-11-26 23:49:11] 2025-11-27 04:49:10,687 [wrapper] Test setup, not cleaning
[2025-11-26 23:49:11] 2025-11-27 04:49:10,711 [wrapper] apfmon messages muted
[2025-11-26 23:49:11] 2025-11-27 04:49:10,742 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:49:11] 2025-11-27 04:49:10,745 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:49:11]  *** Error codes and diagnostics ***
[2025-11-26 23:49:11]     "exeErrorCode": 0,
[2025-11-26 23:49:11]     "exeErrorDiag": "",
[2025-11-26 23:49:11]     "pilotErrorCode": 0,
[2025-11-26 23:49:11]     "pilotErrorDiag": "",
[2025-11-26 23:49:11]  *** Listing of results directory ***
[2025-11-26 23:49:11] total 1319128
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 12:06 queuedata.json
[2025-11-26 23:49:11] -rwx------. 1 boincer umatlas     36292 Nov 24 12:08 runpilot2-wrapper.sh
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas       100 Nov 25 22:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:49:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 22:20 run_atlas
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas       105 Nov 25 22:20 job.xml
[2025-11-26 23:49:11] -rw-r--r--. 2 boincer umatlas 408610196 Nov 25 22:20 EVNT.47483658._001400.pool.root.1
[2025-11-26 23:49:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:20 start_atlas.sh
[2025-11-26 23:49:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 22:20 shared
[2025-11-26 23:49:11] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 22:20 input.tar.gz
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas         0 Nov 25 22:20 boinc_lockfile
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 22:21 pandaJob.out
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas        57 Nov 25 22:21 setup.sh.local
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas    991877 Nov 25 22:22 agis_schedconf.cvmfs.json
[2025-11-26 23:49:11] drwx------. 5 boincer umatlas      4096 Nov 25 22:22 pilot3
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas       533 Nov 26 23:08 boinc_task_state.xml
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas 910848254 Nov 26 23:46 HITS.47556149._003865.pool.root.1
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas      1069 Nov 26 23:47 memory_monitor_summary.json
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:47 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas   2483892 Nov 26 23:47 log.47556149._003865.job.log.tgz.1
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 23:47 init_data.xml
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas      8634 Nov 26 23:48 heartbeat.json
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas        95 Nov 26 23:49 pilot_heartbeat.json
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:49 boinc_mmap_file
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:49 wrapper_checkpoint.txt
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas      4824 Nov 26 23:49 pilotlog.txt
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas  11218143 Nov 26 23:49 log.47556149._003865.job.log.1
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas       353 Nov 26 23:49 output.list
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:49 runtime_log
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas  13721600 Nov 26 23:49 result.tar.gz
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 23:49 runtime_log.err
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas       665 Nov 26 23:49 CQpLDm9Dph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmanLKDmLyoWSm.diag
[2025-11-26 23:49:11] -rw-r--r--. 1 boincer umatlas     21913 Nov 26 23:49 stderr.txt
[2025-11-26 23:49:11] HITS file was successfully produced:
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas 910848254 Nov 26 23:46 shared/HITS.pool.root.1
[2025-11-26 23:49:11]  *** Contents of shared directory: ***
[2025-11-26 23:49:11] total 1302544
[2025-11-26 23:49:11] -rw-r--r--. 2 boincer umatlas 408610196 Nov 25 22:20 ATLAS.root_0
[2025-11-26 23:49:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:20 start_atlas.sh
[2025-11-26 23:49:11] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 22:20 input.tar.gz
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas 910848254 Nov 26 23:46 HITS.pool.root.1
[2025-11-26 23:49:11] -rw-------. 1 boincer umatlas  13721600 Nov 26 23:49 result.tar.gz
23:49:14 (2424324): run_atlas exited; CPU time 207910.266645
23:49:14 (2424324): called boinc_finish(0)

</stderr_txt>
]]>

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