Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:41:58 (3364137): wrapper (7.7.26015): starting
19:41:58 (3364137): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:41:58] Arguments: --nthreads 8
[2025-11-25 19:41:58] Threads: 8
[2025-11-25 19:41:58] Checking for CVMFS
[2025-11-25 19:41:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:41:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:41:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:42:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:42:19] 2.13.3.0 11959 29345 375432 153303 2 539 18688638 32935936 44820 16776704 0 145183709 99.493 190750370 34982 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:42:19] CVMFS is ok
[2025-11-25 19:42:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:42:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:42:19] Further information can be found at the LHC@home message board.
[2025-11-25 19:42:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:42:19] Checking for apptainer binary...
[2025-11-25 19:42:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:42:19] Running /usr/bin/apptainer --version
[2025-11-25 19:42:19] apptainer version 1.4.4-1.el9
[2025-11-25 19:42:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:42:19] c6-12-27-3.aglt2.org
[2025-11-25 19:42:19] apptainer works
[2025-11-25 19:42:19] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:42:19] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:42:19] Starting ATLAS job with PandaID=6896451245
[2025-11-25 19:42:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:40:12 (3364137): BOINC client no longer exists - exiting
22:40:12 (3364137): timer handler: client dead, exiting
22:40:58 (92907): wrapper (7.7.26015): starting
22:40:58 (92907): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:40:58] Arguments: --nthreads 8
[2025-11-25 22:40:58] Threads: 8
[2025-11-25 22:40:58] This job has been restarted, cleaning up previous attempt
[2025-11-25 22:40:58] Checking for CVMFS
[2025-11-25 22:40:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:40:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:40:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:40:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:40:58] 2.13.3.0 11959 29524 360564 153307 0 114 23867828 32935936 38194 16776704 0 146671134 99.494 192036547 34946 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:40:58] CVMFS is ok
[2025-11-25 22:40:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:40:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:40:58] Further information can be found at the LHC@home message board.
[2025-11-25 22:40:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:40:58] Checking for apptainer binary...
[2025-11-25 22:40:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:40:58] Running /usr/bin/apptainer --version
[2025-11-25 22:40:58] apptainer version 1.4.4-1.el9
[2025-11-25 22:40:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:40:58] c6-12-27-3.aglt2.org
[2025-11-25 22:40:58] apptainer works
[2025-11-25 22:40:58] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:40:58] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:40:58] Starting ATLAS job with PandaID=6896451245
[2025-11-25 22:40:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:16:16]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:16:16] 2025-11-27 06:15:09,855 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:16:16] 2025-11-27 06:15:09,855 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:16:16] 2025-11-27 06:15:09,879 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:16:16] 2025-11-27 06:15:09,881 | INFO     | sum of square deviations: 1193112075003.4114
[2025-11-27 01:16:16] 2025-11-27 06:15:09,937 | INFO     | sum of deviations: 4859947830501.509
[2025-11-27 01:16:16] 2025-11-27 06:15:09,937 | INFO     | mean x: 1764176261.952138
[2025-11-27 01:16:16] 2025-11-27 06:15:09,937 | INFO     | mean y: 2938403.086790045
[2025-11-27 01:16:16] 2025-11-27 06:15:09,937 | INFO     | intersect: -7183146438.835575
[2025-11-27 01:16:16] 2025-11-27 06:15:09,944 | INFO     | chi2: 9.155986221558917
[2025-11-27 01:16:16] 2025-11-27 06:15:09,951 | INFO     | sum of square deviations: 1181729275912.5645
[2025-11-27 01:16:16] 2025-11-27 06:15:10,086 | INFO     | sum of deviations: 5422924419861.0
[2025-11-27 01:16:16] 2025-11-27 06:15:10,087 | INFO     | mean x: 1764176109.4647887
[2025-11-27 01:16:16] 2025-11-27 06:15:10,087 | INFO     | mean y: 2945944.4545454546
[2025-11-27 01:16:16] 2025-11-27 06:15:10,087 | INFO     | intersect: -8092811603.367967
[2025-11-27 01:16:16] 2025-11-27 06:15:10,089 | INFO     | chi2: 5.696763828149124
[2025-11-27 01:16:16] 2025-11-27 06:15:10,089 | INFO     | current chi2=5.696763828149124 (change=37.78099168896323 %)
[2025-11-27 01:16:16] 2025-11-27 06:15:10,099 | INFO     | sum of square deviations: 1170418939162.126
[2025-11-27 01:16:16] 2025-11-27 06:15:10,168 | INFO     | sum of deviations: 5890114736373.929
[2025-11-27 01:16:16] 2025-11-27 06:15:10,168 | INFO     | mean x: 1764175956.9762363
[2025-11-27 01:16:16] 2025-11-27 06:15:10,168 | INFO     | mean y: 2952240.3493898525
[2025-11-27 01:16:16] 2025-11-27 06:15:10,169 | INFO     | intersect: -8875235265.041721
[2025-11-27 01:16:16] 2025-11-27 06:15:10,170 | INFO     | chi2: 3.0558707662719455
[2025-11-27 01:16:16] 2025-11-27 06:15:10,170 | INFO     | current chi2=3.0558707662719455 (change=46.35777682809792 %)
[2025-11-27 01:16:16] 2025-11-27 06:15:10,172 | INFO     | sum of square deviations: 1159181116733.7903
[2025-11-27 01:16:16] 2025-11-27 06:15:10,215 | INFO     | sum of deviations: 6125582843025.938
[2025-11-27 01:16:16] 2025-11-27 06:15:10,216 | INFO     | mean x: 1764175804.4884021
[2025-11-27 01:16:16] 2025-11-27 06:15:10,216 | INFO     | mean y: 2955434.468427835
[2025-11-27 01:16:16] 2025-11-27 06:15:10,216 | INFO     | intersect: -9319664546.182457
[2025-11-27 01:16:16] 2025-11-27 06:15:10,218 | INFO     | chi2: 2.2888510625614953
[2025-11-27 01:16:16] 2025-11-27 06:15:10,218 | INFO     | current chi2=2.2888510625614953 (change=25.099873730792194 %)
[2025-11-27 01:16:16] 2025-11-27 06:15:10,219 | INFO     | sum of square deviations: 1148015387650.0
[2025-11-27 01:16:16] 2025-11-27 06:15:10,287 | INFO     | sum of deviations: 6164691856644.009
[2025-11-27 01:16:16] 2025-11-27 06:15:10,287 | INFO     | mean x: 1764175652.0
[2025-11-27 01:16:16] 2025-11-27 06:15:10,287 | INFO     | mean y: 2955967.259857789
[2025-11-27 01:16:16] 2025-11-27 06:15:10,287 | INFO     | intersect: -9470435585.301563
[2025-11-27 01:16:16] 2025-11-27 06:15:10,293 | INFO     | chi2: 2.179086147129927
[2025-11-27 01:16:16] 2025-11-27 06:15:10,293 | INFO     | current chi2=2.179086147129927 (change=4.795633810647694 %)
[2025-11-27 01:16:16] 2025-11-27 06:15:10,294 | INFO     | right removable region: 1546
[2025-11-27 01:16:16] 2025-11-27 06:15:10,295 | INFO     | sum of square deviations: 1181725689004.422
[2025-11-27 01:16:16] 2025-11-27 06:15:10,389 | INFO     | sum of deviations: 4470325863083.229
[2025-11-27 01:16:16] 2025-11-27 06:15:10,389 | INFO     | mean x: 1764176414.4635084
[2025-11-27 01:16:16] 2025-11-27 06:15:10,389 | INFO     | mean y: 2943616.775928297
[2025-11-27 01:16:16] 2025-11-27 06:15:10,390 | INFO     | intersect: -6670723145.314869
[2025-11-27 01:16:16] 2025-11-27 06:15:10,391 | INFO     | chi2: 7.3079198218802786
[2025-11-27 01:16:16] 2025-11-27 06:15:10,392 | INFO     | current chi2=7.3079198218802786 (change=20.18424181686878 %)
[2025-11-27 01:16:16] 2025-11-27 06:15:10,396 | INFO     | left removable region: 10
[2025-11-27 01:16:16] 2025-11-27 06:15:10,398 | INFO     | sum of square deviations: 1123698294475.625
[2025-11-27 01:16:16] 2025-11-27 06:15:10,617 | INFO     | sum of deviations: 5633433601700.7
[2025-11-27 01:16:16] 2025-11-27 06:15:10,617 | INFO     | mean x: 1764175926.515625
[2025-11-27 01:16:16] 2025-11-27 06:15:10,617 | INFO     | mean y: 2963037.9954427085
[2025-11-27 01:16:16] 2025-11-27 06:15:10,617 | INFO     | intersect: -8841375333.437555
[2025-11-27 01:16:16] 2025-11-27 06:15:10,649 | INFO     | chi2: 0.2335000164666704
[2025-11-27 01:16:16] 2025-11-27 06:15:10,649 | INFO     | current memory leak: 5.01 B/s (using 1536 data points, chi2=0.23)
[2025-11-27 01:16:16] 2025-11-27 06:15:10,675 | INFO     | could have reported an average CPU frequency of 2717 MHz (55 samples)
[2025-11-27 01:16:16] 2025-11-27 06:15:10,675 | INFO     | ..............................
[2025-11-27 01:16:16] 2025-11-27 06:15:10,675 | INFO     | . Timing measurements:
[2025-11-27 01:16:16] 2025-11-27 06:15:10,676 | INFO     | . get job = 0 s
[2025-11-27 01:16:16] 2025-11-27 06:15:10,676 | INFO     | . initial setup = 1 s
[2025-11-27 01:16:16] 2025-11-27 06:15:10,676 | INFO     | . payload setup = 5 s
[2025-11-27 01:16:16] 2025-11-27 06:15:10,676 | INFO     | . stage-in = 0 s
[2025-11-27 01:16:16] 2025-11-27 06:15:10,676 | INFO     | . payload execution = 95578 s
[2025-11-27 01:16:16] 2025-11-27 06:15:10,676 | INFO     | . stage-out = 7 s
[2025-11-27 01:16:16] 2025-11-27 06:15:10,676 | INFO     | . log creation = 1 s
[2025-11-27 01:16:16] 2025-11-27 06:15:10,676 | INFO     | ..............................
[2025-11-27 01:16:16] 2025-11-27 06:15:10,984 | INFO     | 
[2025-11-27 01:16:16] 2025-11-27 06:15:10,984 | INFO     | job summary report
[2025-11-27 01:16:16] 2025-11-27 06:15:10,984 | INFO     | --------------------------------------------------
[2025-11-27 01:16:16] 2025-11-27 06:15:10,984 | INFO     | PanDA job id: 6896451245
[2025-11-27 01:16:16] 2025-11-27 06:15:10,984 | INFO     | task id: 47556149
[2025-11-27 01:16:16] 2025-11-27 06:15:10,984 | INFO     | errors: (none)
[2025-11-27 01:16:16] 2025-11-27 06:15:10,984 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | pilot state: finished 
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | transexitcode: 0
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | exeerrorcode: 0
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | exeerrordiag: 
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | exitcode: 0
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | exitmsg: OK
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | cpuconsumptiontime: 261105 s
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | nevents: 1000
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | neventsw: 0
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | pid: 173848
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | pgrp: 173848
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | corecount: 8
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | event service: False
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | sizes: {0: 2284309, 4: 2284571, 11: 2284599, 95587: 2352792, 95588: 2352791, 95598: 2361841, 95601: 2362025, 95627: 2362271}
[2025-11-27 01:16:16] 2025-11-27 06:15:10,985 | INFO     | --------------------------------------------------
[2025-11-27 01:16:16] 2025-11-27 06:15:10,986 | INFO     | 
[2025-11-27 01:16:16] 2025-11-27 06:15:10,986 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 01:16:16] 2025-11-27 06:15:11,118 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,118 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,118 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,119 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,120 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,120 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:16:16] 2025-11-27 06:15:11,120 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,120 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:16:16] 2025-11-27 06:15:11,120 | INFO     | job 6896451245 has completed (purged errors)
[2025-11-27 01:16:16] 2025-11-27 06:15:11,120 | INFO     | overall cleanup function is called
[2025-11-27 01:16:16] 2025-11-27 06:15:12,152 | INFO     | --- collectZombieJob: --- 10, [173848]
[2025-11-27 01:16:16] 2025-11-27 06:15:12,152 | INFO     | zombie collector waiting for pid 173848
[2025-11-27 01:16:16] 2025-11-27 06:15:12,152 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:16:16] 2025-11-27 06:15:12,152 | INFO     | collected zombie processes
[2025-11-27 01:16:16] 2025-11-27 06:15:12,152 | INFO     | will attempt to kill all subprocesses of pid=173848
[2025-11-27 01:16:16] 2025-11-27 06:15:14,324 | INFO     | process IDs to be killed: [173848] (in reverse order)
[2025-11-27 01:16:16] 2025-11-27 06:15:14,702 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:16:16] 2025-11-27 06:15:14,702 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:16:16] 2025-11-27 06:15:14,840 | INFO     | did not find any defunct processes belonging to 173848
[2025-11-27 01:16:16] 2025-11-27 06:15:14,978 | INFO     | did not find any defunct processes belonging to 173848
[2025-11-27 01:16:16] 2025-11-27 06:15:14,990 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:16:16] 2025-11-27 06:15:14,991 | INFO     | ready for new job
[2025-11-27 01:16:16] 2025-11-27 06:15:14,991 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:16:16] 2025-11-27 06:15:15,014 | INFO     | ***************************************
[2025-11-27 01:16:16] 2025-11-27 06:15:15,014 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:16:16] 2025-11-27 06:15:15,014 | INFO     | ***************************************
[2025-11-27 01:16:16] 2025-11-27 06:15:15,014 | INFO     | 
[2025-11-27 01:16:16] 2025-11-27 06:15:15,044 | INFO     | architecture information:
[2025-11-27 01:16:16] 2025-11-27 06:15:15,049 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:16:16] 2025-11-27 06:15:15,105 | INFO     | cat /etc/os-release:
[2025-11-27 01:16:16] NAME="CentOS Linux"
[2025-11-27 01:16:16] VERSION="7 (Core)"
[2025-11-27 01:16:16] ID="centos"
[2025-11-27 01:16:16] ID_LIKE="rhel fedora"
[2025-11-27 01:16:16] VERSION_ID="7"
[2025-11-27 01:16:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:16:16] ANSI_COLOR="0;31"
[2025-11-27 01:16:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:16:16] HOME_URL="https://www.centos.org/"
[2025-11-27 01:16:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:16:16] 
[2025-11-27 01:16:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:16:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:16:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:16:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:16:16] 
[2025-11-27 01:16:16] 2025-11-27 06:15:15,105 | INFO     | ***************************************
[2025-11-27 01:16:16] 2025-11-27 06:15:15,609 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 01:16:16] 2025-11-27 06:15:15,801 | INFO     | sufficient remaining disk space (88501911552 B)
[2025-11-27 01:16:16] 2025-11-27 06:15:15,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:16:16] 2025-11-27 06:15:15,802 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:16:16] 2025-11-27 06:15:15,802 | INFO     | update_server=False
[2025-11-27 01:16:16] 2025-11-27 06:15:15,802 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:16:16] 2025-11-27 06:15:15,809 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:16:16] 2025-11-27 06:15:15,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:16:16] 2025-11-27 06:15:15,813 | INFO     | aborting loop
[2025-11-27 01:16:16] 2025-11-27 06:15:16,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:16:16] 2025-11-27 06:15:16,387 | INFO     | all job control threads have been joined
[2025-11-27 01:16:16] 2025-11-27 06:15:16,765 | INFO     | all data control threads have been joined
[2025-11-27 01:16:16] 2025-11-27 06:15:16,808 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:16,819 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:17,015 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:17,080 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:17,269 | INFO     | all payload control threads have been joined
[2025-11-27 01:16:16] 2025-11-27 06:15:17,393 | INFO     | [job] control thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:17,467 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:17,736 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:17,771 | INFO     | [data] control thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:17,786 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:17,834 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:17,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:16:16] 2025-11-27 06:15:18,084 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:18,178 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:18,179 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:18,180 | INFO     | [job] validate thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:18,275 | INFO     | [payload] control thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:21,971 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:16:16] 2025-11-27 06:15:44,431 | INFO     | PID=123384 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 01:16:16] 2025-11-27 06:15:44,431 | INFO     | .. there are 66 such processes running
[2025-11-27 01:16:16] 2025-11-27 06:15:44,436 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:16:16] 2025-11-27 06:15:44,436 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:16:16] 2025-11-27 06:15:44,437 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:16:16] 2025-11-27 06:16:08,709 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:16:16] 2025-11-27 06:16:10,018 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140525485647680)>', '<ExcThread(monitor, started 140524996511488)>']
[2025-11-27 01:16:16] 2025-11-27 06:16:10,662 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:16:16] 2025-11-27 06:16:10,662 | INFO     | [monitor] control thread has ended
[2025-11-27 01:16:16] 2025-11-27 06:16:15,044 | INFO     | all workflow threads have been joined
[2025-11-27 01:16:16] 2025-11-27 06:16:15,044 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:16:16] 2025-11-27 06:16:15,044 | INFO     | traces error code: 0
[2025-11-27 01:16:16] 2025-11-27 06:16:15,045 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:16:16] 2025-11-27 06:16:16,167 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:16:16] 2025-11-27 06:16:16,177 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:16:16] 2025-11-27 06:16:16,181 [wrapper] pilotpid: 123384
[2025-11-27 01:16:16] 2025-11-27 06:16:16,184 [wrapper] Pilot exit status: 0
[2025-11-27 01:16:16] 2025-11-27 06:16:16,220 [wrapper] pandaids: 6896451245 6896451245
[2025-11-27 01:16:16] 2025-11-27 06:16:16,352 [wrapper] cleanup supervisor_pilot 4193870 123385
[2025-11-27 01:16:16] 2025-11-27 06:16:16,370 [wrapper] Test setup, not cleaning
[2025-11-27 01:16:16] 2025-11-27 06:16:16,390 [wrapper] apfmon messages muted
[2025-11-27 01:16:16] 2025-11-27 06:16:16,405 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:16:16] 2025-11-27 06:16:16,423 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:16:16]  *** Error codes and diagnostics ***
[2025-11-27 01:16:16]     "exeErrorCode": 0,
[2025-11-27 01:16:16]     "exeErrorDiag": "",
[2025-11-27 01:16:16]     "pilotErrorCode": 0,
[2025-11-27 01:16:16]     "pilotErrorDiag": "",
[2025-11-27 01:16:16]  *** Listing of results directory ***
[2025-11-27 01:16:16] total 1732124
[2025-11-27 01:16:16] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-27 01:16:16] -rwx------. 1 boincer umatlas     36292 Nov 24 23:26 runpilot2-wrapper.sh
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:26 queuedata.json
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:16:16] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:41 run_atlas
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:41 job.xml
[2025-11-27 01:16:16] -rw-r--r--. 3 boincer umatlas 411876940 Nov 25 19:41 EVNT.47483658._001509.pool.root.1
[2025-11-27 01:16:16] -rw-r--r--. 3 boincer umatlas 411876940 Nov 25 19:41 ATLAS.root_0
[2025-11-27 01:16:16] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:41 start_atlas.sh
[2025-11-27 01:16:16] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:41 shared
[2025-11-27 01:16:16] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 19:41 input.tar.gz
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:41 boinc_lockfile
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 22:40 pandaJob.out
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas        57 Nov 25 22:40 setup.sh.local
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas    991877 Nov 25 22:41 agis_schedconf.cvmfs.json
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas       533 Nov 27 00:54 boinc_task_state.xml
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas      6879 Nov 27 01:10 init_data.xml
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas 919284362 Nov 27 01:13 HITS.47556149._004951.pool.root.1
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas      1069 Nov 27 01:14 memory_monitor_summary.json
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas   1516240 Nov 27 01:14 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas   2461565 Nov 27 01:14 log.47556149._004951.job.log.tgz.1
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas      8642 Nov 27 01:15 heartbeat.json
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas        95 Nov 27 01:15 pilot_heartbeat.json
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 01:16 boinc_mmap_file
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas        29 Nov 27 01:16 wrapper_checkpoint.txt
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas      4823 Nov 27 01:16 pilotlog.txt
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas  10905566 Nov 27 01:16 log.47556149._004951.job.log.1
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas       353 Nov 27 01:16 output.list
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas       620 Nov 27 01:16 runtime_log
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas  13383680 Nov 27 01:16 result.tar.gz
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas      9438 Nov 27 01:16 runtime_log.err
[2025-11-27 01:16:16] -rw-------. 1 boincer umatlas       792 Nov 27 01:16 pgDNDmeozh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAKJKDmp7O3cm.diag
[2025-11-27 01:16:16] -rw-r--r--. 1 boincer umatlas     23393 Nov 27 01:16 stderr.txt
[2025-11-27 01:16:17] HITS file was successfully produced:
[2025-11-27 01:16:17] -rw-------. 1 boincer umatlas 919284362 Nov 27 01:13 shared/HITS.pool.root.1
[2025-11-27 01:16:17]  *** Contents of shared directory: ***
[2025-11-27 01:16:17] total 1313640
[2025-11-27 01:16:17] -rw-r--r--. 3 boincer umatlas 411876940 Nov 25 19:41 ATLAS.root_0
[2025-11-27 01:16:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:41 start_atlas.sh
[2025-11-27 01:16:17] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 19:41 input.tar.gz
[2025-11-27 01:16:17] -rw-------. 1 boincer umatlas 919284362 Nov 27 01:13 HITS.pool.root.1
[2025-11-27 01:16:17] -rw-------. 1 boincer umatlas  13383680 Nov 27 01:16 result.tar.gz
01:16:18 (92907): run_atlas exited; CPU time 265478.845634
01:16:18 (92907): called boinc_finish(0)

</stderr_txt>
]]>

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