Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:50:03 (4963): wrapper (7.7.26015): starting
18:50:03 (4963): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 18:50:03] Arguments: --nthreads 8
[2025-11-25 18:50:03] Threads: 8
[2025-11-25 18:50:03] Checking for CVMFS
[2025-11-25 18:50:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:50:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:50:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:50:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:50:04] 2.11.2.0 3838 141706 133252 153302 1 82 13067818 18432000 1885 130560 0 116841999 99.988 5039846 27148 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 18:50:04] CVMFS is ok
[2025-11-25 18:50:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:50:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:50:04] Further information can be found at the LHC@home message board.
[2025-11-25 18:50:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:50:04] Checking for apptainer binary...
[2025-11-25 18:50:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:50:04] Running /usr/bin/apptainer --version
[2025-11-25 18:50:04] apptainer version 1.3.2-1.el7
[2025-11-25 18:50:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:50:04] c-206-4.aglt2.org
[2025-11-25 18:50:04] apptainer works
[2025-11-25 18:50:04] Set ATHENA_PROC_NUMBER=8
[2025-11-25 18:50:04] Set ATHENA_CORE_NUMBER=8
[2025-11-25 18:50:05] Starting ATLAS job with PandaID=6896558441
[2025-11-25 18:50:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:52:36]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:52:36] 2025-11-26 18:52:03,290 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 13:52:36] 2025-11-26 18:52:03,296 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.125
[2025-11-26 13:52:36] 2025-11-26 18:52:03,300 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896558441/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:52:36] 2025-11-26 18:52:03,301 | INFO     | extracted standard info from prmon json
[2025-11-26 13:52:36] 2025-11-26 18:52:03,301 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:52:36] 2025-11-26 18:52:03,302 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:52:36] 2025-11-26 18:52:03,331 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:52:36] 2025-11-26 18:52:03,332 | INFO     | sum of square deviations: 439155178819.7029
[2025-11-26 13:52:36] 2025-11-26 18:52:03,361 | INFO     | sum of deviations: 2190419088300.8462
[2025-11-26 13:52:36] 2025-11-26 18:52:03,361 | INFO     | mean x: 1764148863.5520926
[2025-11-26 13:52:36] 2025-11-26 18:52:03,361 | INFO     | mean y: 2969773.7034728406
[2025-11-26 13:52:36] 2025-11-26 18:52:03,362 | INFO     | intersect: -8796255492.669222
[2025-11-26 13:52:36] 2025-11-26 18:52:03,363 | INFO     | chi2: 5.830425904549564
[2025-11-26 13:52:36] 2025-11-26 18:52:03,365 | INFO     | sum of square deviations: 433315621215.6742
[2025-11-26 13:52:36] 2025-11-26 18:52:03,393 | INFO     | sum of deviations: 2547108358690.622
[2025-11-26 13:52:36] 2025-11-26 18:52:03,394 | INFO     | mean x: 1764148711.0545616
[2025-11-26 13:52:36] 2025-11-26 18:52:03,394 | INFO     | mean y: 2979082.9570661895
[2025-11-26 13:52:36] 2025-11-26 18:52:03,394 | INFO     | intersect: -10367009230.166365
[2025-11-26 13:52:36] 2025-11-26 18:52:03,395 | INFO     | chi2: 3.0339477761328726
[2025-11-26 13:52:36] 2025-11-26 18:52:03,395 | INFO     | current chi2=3.0339477761328726 (change=47.96353086718004 %)
[2025-11-26 13:52:36] 2025-11-26 18:52:03,396 | INFO     | sum of square deviations: 427528064586.62714
[2025-11-26 13:52:36] 2025-11-26 18:52:03,418 | INFO     | sum of deviations: 2694965979480.101
[2025-11-26 13:52:36] 2025-11-26 18:52:03,418 | INFO     | mean x: 1764148558.557053
[2025-11-26 13:52:36] 2025-11-26 18:52:03,418 | INFO     | mean y: 2982977.336927224
[2025-11-26 13:52:36] 2025-11-26 18:52:03,418 | INFO     | intersect: -11117504171.634274
[2025-11-26 13:52:36] 2025-11-26 18:52:03,419 | INFO     | chi2: 2.4535874614598105
[2025-11-26 13:52:36] 2025-11-26 18:52:03,419 | INFO     | current chi2=2.4535874614598105 (change=19.128882811977743 %)
[2025-11-26 13:52:36] 2025-11-26 18:52:03,419 | INFO     | right removable region: 1112
[2025-11-26 13:52:36] 2025-11-26 18:52:03,420 | INFO     | sum of square deviations: 433315243015.6738
[2025-11-26 13:52:36] 2025-11-26 18:52:03,461 | INFO     | sum of deviations: 1885633782635.279
[2025-11-26 13:52:36] 2025-11-26 18:52:03,461 | INFO     | mean x: 1764149016.0545616
[2025-11-26 13:52:36] 2025-11-26 18:52:03,461 | INFO     | mean y: 2977723.6511627906
[2025-11-26 13:52:36] 2025-11-26 18:52:03,461 | INFO     | intersect: -7673971185.701979
[2025-11-26 13:52:36] 2025-11-26 18:52:03,462 | INFO     | chi2: 3.7581503699369403
[2025-11-26 13:52:36] 2025-11-26 18:52:03,462 | INFO     | current chi2=3.7581503699369403 (change=35.54243838337089 %)
[2025-11-26 13:52:36] 2025-11-26 18:52:03,463 | INFO     | sum of square deviations: 427527580857.0653
[2025-11-26 13:52:36] 2025-11-26 18:52:03,486 | INFO     | sum of deviations: 1812003921167.7456
[2025-11-26 13:52:36] 2025-11-26 18:52:03,486 | INFO     | mean x: 1764149168.5534592
[2025-11-26 13:52:36] 2025-11-26 18:52:03,486 | INFO     | mean y: 2979663.2731356695
[2025-11-26 13:52:36] 2025-11-26 18:52:03,486 | INFO     | intersect: -7474070599.859282
[2025-11-26 13:52:36] 2025-11-26 18:52:03,487 | INFO     | chi2: 3.712817729361744
[2025-11-26 13:52:36] 2025-11-26 18:52:03,488 | INFO     | current chi2=3.712817729361744 (change=1.2062487157999695 %)
[2025-11-26 13:52:36] 2025-11-26 18:52:03,488 | INFO     | left removable region: 20
[2025-11-26 13:52:36] 2025-11-26 18:52:03,489 | INFO     | sum of square deviations: 403782093100.2485
[2025-11-26 13:52:36] 2025-11-26 18:52:03,511 | INFO     | sum of deviations: 2233640360078.733
[2025-11-26 13:52:36] 2025-11-26 18:52:03,511 | INFO     | mean x: 1764149138.058608
[2025-11-26 13:52:36] 2025-11-26 18:52:03,511 | INFO     | mean y: 2996109.863553114
[2025-11-26 13:52:36] 2025-11-26 18:52:03,512 | INFO     | intersect: -9755917876.912724
[2025-11-26 13:52:36] 2025-11-26 18:52:03,513 | INFO     | chi2: 0.27034506166881833
[2025-11-26 13:52:36] 2025-11-26 18:52:03,513 | INFO     | current memory leak: 5.53 B/s (using 1092 data points, chi2=0.27)
[2025-11-26 13:52:36] 2025-11-26 18:52:03,514 | INFO     | could have reported an average CPU frequency of 2627 MHz (41 samples)
[2025-11-26 13:52:36] 2025-11-26 18:52:03,514 | INFO     | ..............................
[2025-11-26 13:52:36] 2025-11-26 18:52:03,514 | INFO     | . Timing measurements:
[2025-11-26 13:52:36] 2025-11-26 18:52:03,514 | INFO     | . get job = 0 s
[2025-11-26 13:52:36] 2025-11-26 18:52:03,515 | INFO     | . initial setup = 2 s
[2025-11-26 13:52:36] 2025-11-26 18:52:03,515 | INFO     | . payload setup = 6 s
[2025-11-26 13:52:36] 2025-11-26 18:52:03,515 | INFO     | . stage-in = 0 s
[2025-11-26 13:52:36] 2025-11-26 18:52:03,515 | INFO     | . payload execution = 68469 s
[2025-11-26 13:52:36] 2025-11-26 18:52:03,515 | INFO     | . stage-out = 3 s
[2025-11-26 13:52:36] 2025-11-26 18:52:03,515 | INFO     | . log creation = 0 s
[2025-11-26 13:52:36] 2025-11-26 18:52:03,516 | INFO     | ..............................
[2025-11-26 13:52:36] 2025-11-26 18:52:03,655 | INFO     | 
[2025-11-26 13:52:36] 2025-11-26 18:52:03,655 | INFO     | job summary report
[2025-11-26 13:52:36] 2025-11-26 18:52:03,656 | INFO     | --------------------------------------------------
[2025-11-26 13:52:36] 2025-11-26 18:52:03,656 | INFO     | PanDA job id: 6896558441
[2025-11-26 13:52:36] 2025-11-26 18:52:03,656 | INFO     | task id: 47556161
[2025-11-26 13:52:36] 2025-11-26 18:52:03,656 | INFO     | errors: (none)
[2025-11-26 13:52:36] 2025-11-26 18:52:03,657 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:52:36] 2025-11-26 18:52:03,657 | INFO     | pilot state: finished 
[2025-11-26 13:52:36] 2025-11-26 18:52:03,657 | INFO     | transexitcode: 0
[2025-11-26 13:52:36] 2025-11-26 18:52:03,657 | INFO     | exeerrorcode: 0
[2025-11-26 13:52:36] 2025-11-26 18:52:03,657 | INFO     | exeerrordiag: 
[2025-11-26 13:52:36] 2025-11-26 18:52:03,657 | INFO     | exitcode: 0
[2025-11-26 13:52:36] 2025-11-26 18:52:03,658 | INFO     | exitmsg: OK
[2025-11-26 13:52:36] 2025-11-26 18:52:03,658 | INFO     | cpuconsumptiontime: 527422 s
[2025-11-26 13:52:36] 2025-11-26 18:52:03,658 | INFO     | nevents: 1000
[2025-11-26 13:52:36] 2025-11-26 18:52:03,658 | INFO     | neventsw: 0
[2025-11-26 13:52:36] 2025-11-26 18:52:03,658 | INFO     | pid: 15134
[2025-11-26 13:52:36] 2025-11-26 18:52:03,658 | INFO     | pgrp: 15134
[2025-11-26 13:52:36] 2025-11-26 18:52:03,659 | INFO     | corecount: 8
[2025-11-26 13:52:36] 2025-11-26 18:52:03,659 | INFO     | event service: False
[2025-11-26 13:52:36] 2025-11-26 18:52:03,659 | INFO     | sizes: {0: 2284262, 1: 2284262, 4: 2284552, 11: 2284580, 68478: 2340529, 68479: 2340528, 68483: 2349706, 68486: 2349762, 68492: 2350104}
[2025-11-26 13:52:36] 2025-11-26 18:52:03,659 | INFO     | --------------------------------------------------
[2025-11-26 13:52:36] 2025-11-26 18:52:03,659 | INFO     | 
[2025-11-26 13:52:36] 2025-11-26 18:52:03,659 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 13:52:36] 2025-11-26 18:52:03,675 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,675 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,675 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,676 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,676 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,676 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,676 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,676 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,676 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,677 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,677 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,677 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,677 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,677 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,677 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,678 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,678 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,678 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:52:36] 2025-11-26 18:52:03,678 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,678 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:52:36] 2025-11-26 18:52:03,679 | INFO     | job 6896558441 has completed (purged errors)
[2025-11-26 13:52:36] 2025-11-26 18:52:03,679 | INFO     | overall cleanup function is called
[2025-11-26 13:52:36] 2025-11-26 18:52:03,835 | INFO     | PID=8642 has CPU usage=18.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 13:52:36] 2025-11-26 18:52:03,836 | INFO     | .. there are 3 such processes running
[2025-11-26 13:52:36] 2025-11-26 18:52:04,702 | INFO     | --- collectZombieJob: --- 10, [15134]
[2025-11-26 13:52:36] 2025-11-26 18:52:04,702 | INFO     | zombie collector waiting for pid 15134
[2025-11-26 13:52:36] 2025-11-26 18:52:04,702 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:52:36] 2025-11-26 18:52:04,702 | INFO     | collected zombie processes
[2025-11-26 13:52:36] 2025-11-26 18:52:04,702 | INFO     | will attempt to kill all subprocesses of pid=15134
[2025-11-26 13:52:36] 2025-11-26 18:52:04,872 | INFO     | process IDs to be killed: [15134] (in reverse order)
[2025-11-26 13:52:36] 2025-11-26 18:52:04,930 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:52:36] 2025-11-26 18:52:04,931 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:52:36] 2025-11-26 18:52:04,936 | INFO     | did not find any defunct processes belonging to 15134
[2025-11-26 13:52:36] 2025-11-26 18:52:04,941 | INFO     | did not find any defunct processes belonging to 15134
[2025-11-26 13:52:36] 2025-11-26 18:52:04,943 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:52:36] 2025-11-26 18:52:04,943 | INFO     | ready for new job
[2025-11-26 13:52:36] 2025-11-26 18:52:04,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:52:36] 2025-11-26 18:52:04,948 | INFO     | ***************************************
[2025-11-26 13:52:36] 2025-11-26 18:52:04,948 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:52:36] 2025-11-26 18:52:04,949 | INFO     | ***************************************
[2025-11-26 13:52:36] 2025-11-26 18:52:04,949 | INFO     | 
[2025-11-26 13:52:36] 2025-11-26 18:52:04,950 | INFO     | architecture information:
[2025-11-26 13:52:36] 2025-11-26 18:52:04,951 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:52:36] 2025-11-26 18:52:05,021 | INFO     | cat /etc/os-release:
[2025-11-26 13:52:36] NAME="CentOS Linux"
[2025-11-26 13:52:36] VERSION="7 (Core)"
[2025-11-26 13:52:36] ID="centos"
[2025-11-26 13:52:36] ID_LIKE="rhel fedora"
[2025-11-26 13:52:36] VERSION_ID="7"
[2025-11-26 13:52:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:52:36] ANSI_COLOR="0;31"
[2025-11-26 13:52:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:52:36] HOME_URL="https://www.centos.org/"
[2025-11-26 13:52:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:52:36] 
[2025-11-26 13:52:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:52:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:52:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:52:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:52:36] 
[2025-11-26 13:52:36] 2025-11-26 18:52:05,021 | INFO     | ***************************************
[2025-11-26 13:52:36] 2025-11-26 18:52:05,524 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 13:52:36] 2025-11-26 18:52:05,540 | INFO     | sufficient remaining disk space (25824329728 B)
[2025-11-26 13:52:36] 2025-11-26 18:52:05,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:52:36] 2025-11-26 18:52:05,541 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:52:36] 2025-11-26 18:52:05,541 | INFO     | update_server=False
[2025-11-26 13:52:36] 2025-11-26 18:52:05,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:52:36] 2025-11-26 18:52:05,542 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:52:36] 2025-11-26 18:52:05,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:52:36] 2025-11-26 18:52:05,557 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:52:36] 2025-11-26 18:52:05,557 | INFO     | aborting loop
[2025-11-26 13:52:36] 2025-11-26 18:52:05,865 | INFO     | all payload control threads have been joined
[2025-11-26 13:52:36] 2025-11-26 18:52:06,149 | INFO     | all data control threads have been joined
[2025-11-26 13:52:36] 2025-11-26 18:52:06,549 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:06,549 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:06,562 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:06,652 | INFO     | [job] validate thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:06,695 | INFO     | all job control threads have been joined
[2025-11-26 13:52:36] 2025-11-26 18:52:06,725 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:06,870 | INFO     | [payload] control thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:07,154 | INFO     | [data] control thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:07,514 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:07,544 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:07,548 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:07,568 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:07,663 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:07,700 | INFO     | [job] control thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:07,834 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:07,956 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:08,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:52:36] 2025-11-26 18:52:09,137 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:52:36] 2025-11-26 18:52:12,214 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:52:36] 2025-11-26 18:52:12,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140193492506432)>', '<ExcThread(monitor, started 140193185109760)>']
[2025-11-26 13:52:36] 2025-11-26 18:52:17,514 | INFO     | all workflow threads have been joined
[2025-11-26 13:52:36] 2025-11-26 18:52:17,514 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:52:36] 2025-11-26 18:52:17,514 | INFO     | traces error code: 0
[2025-11-26 13:52:36] 2025-11-26 18:52:17,514 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:52:36] 2025-11-26 18:52:36,055 | INFO     | PID=8642 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 13:52:36] 2025-11-26 18:52:36,056 | INFO     | .. there are 3 such processes running
[2025-11-26 13:52:36] 2025-11-26 18:52:36,056 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:52:36] 2025-11-26 18:52:36,056 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:52:36] 2025-11-26 18:52:36,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:52:36] 2025-11-26 18:52:36,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:52:36] 2025-11-26 18:52:36,057 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 13:52:36] 2025-11-26 18:52:36,057 | INFO     | [monitor] control thread has ended
[2025-11-26 13:52:36] 2025-11-26 18:52:36,183 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:52:36] 2025-11-26 18:52:36,191 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:52:36] 2025-11-26 18:52:36,193 [wrapper] pilotpid: 8642
[2025-11-26 13:52:36] 2025-11-26 18:52:36,196 [wrapper] Pilot exit status: 0
[2025-11-26 13:52:36] 2025-11-26 18:52:36,204 [wrapper] pandaids: 6896558441
[2025-11-26 13:52:36] 2025-11-26 18:52:36,244 [wrapper] cleanup supervisor_pilot 20248 8643
[2025-11-26 13:52:36] 2025-11-26 18:52:36,247 [wrapper] Test setup, not cleaning
[2025-11-26 13:52:36] 2025-11-26 18:52:36,249 [wrapper] apfmon messages muted
[2025-11-26 13:52:36] 2025-11-26 18:52:36,252 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:52:36] 2025-11-26 18:52:36,254 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:52:36]  *** Error codes and diagnostics ***
[2025-11-26 13:52:36]     "exeErrorCode": 0,
[2025-11-26 13:52:36]     "exeErrorDiag": "",
[2025-11-26 13:52:36]     "pilotErrorCode": 0,
[2025-11-26 13:52:36]     "pilotErrorDiag": "",
[2025-11-26 13:52:36]  *** Listing of results directory ***
[2025-11-26 13:52:36] total 1319308
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 00:05 queuedata.json
[2025-11-26 13:52:36] -rwx------ 1 boincer umatlas     36292 Nov 25 00:09 runpilot2-wrapper.sh
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas       100 Nov 25 18:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:52:36] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 18:50 run_atlas
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas       105 Nov 25 18:50 job.xml
[2025-11-26 13:52:36] -rw-r--r-- 2 boincer umatlas 410999430 Nov 25 18:50 EVNT.47483658._002089.pool.root.1
[2025-11-26 13:52:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 18:50 start_atlas.sh
[2025-11-26 13:52:36] drwxrwx--x 2 boincer umatlas      4096 Nov 25 18:50 shared
[2025-11-26 13:52:36] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 18:50 input.tar.gz
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas         0 Nov 25 18:50 boinc_lockfile
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas      2784 Nov 25 18:50 pandaJob.out
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas        57 Nov 25 18:50 setup.sh.local
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas    991877 Nov 25 18:50 agis_schedconf.cvmfs.json
[2025-11-26 13:52:36] drwx------ 5 boincer umatlas      4096 Nov 25 18:50 pilot3
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas       533 Nov 26 13:36 boinc_task_state.xml
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas      5953 Nov 26 13:46 init_data.xml
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas 912502019 Nov 26 13:51 HITS.47556161._000722.pool.root.1
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas        95 Nov 26 13:51 pilot_heartbeat.json
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas      1068 Nov 26 13:51 memory_monitor_summary.json
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas   1516240 Nov 26 13:51 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas   2298935 Nov 26 13:51 log.47556161._000722.job.log.tgz.1
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas      8657 Nov 26 13:52 heartbeat.json
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 13:52 boinc_mmap_file
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas        29 Nov 26 13:52 wrapper_checkpoint.txt
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas       889 Nov 26 13:52 pilotlog.txt
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas   9479518 Nov 26 13:52 log.47556161._000722.job.log.1
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas       353 Nov 26 13:52 output.list
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas       620 Nov 26 13:52 runtime_log
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas  11796480 Nov 26 13:52 result.tar.gz
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas      9338 Nov 26 13:52 runtime_log.err
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas       667 Nov 26 13:52 0waKDmgT0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmi8LKDmScMnlm.diag
[2025-11-26 13:52:36] -rw-r--r-- 1 boincer umatlas     21346 Nov 26 13:52 stderr.txt
[2025-11-26 13:52:36] HITS file was successfully produced:
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas 912502019 Nov 26 13:51 shared/HITS.pool.root.1
[2025-11-26 13:52:36]  *** Contents of shared directory: ***
[2025-11-26 13:52:36] total 1304604
[2025-11-26 13:52:36] -rw-r--r-- 2 boincer umatlas 410999430 Nov 25 18:50 ATLAS.root_0
[2025-11-26 13:52:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 18:50 start_atlas.sh
[2025-11-26 13:52:36] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 18:50 input.tar.gz
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas 912502019 Nov 26 13:51 HITS.pool.root.1
[2025-11-26 13:52:36] -rw------- 1 boincer umatlas  11796480 Nov 26 13:52 result.tar.gz
13:52:37 (4963): run_atlas exited; CPU time 526323.303629
13:52:37 (4963): called boinc_finish(0)

</stderr_txt>
]]>

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