Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
13:11:19 (2656962): wrapper (7.7.26015): starting
13:11:19 (2656962): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 13:11:19] Arguments: --nthreads 10
[2025-11-26 13:11:19] Threads: 10
[2025-11-26 13:11:19] Checking for CVMFS
[2025-11-26 13:11:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:11:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:11:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:11:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:11:19] 2.13.3.0 4524 8229 66368 153334 3 90 3601620 4096000 11536 130560 0 1137202754 99.999 1261271 710 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-26 13:11:19] CVMFS is ok
[2025-11-26 13:11:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:11:19] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-26 13:11:19] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-26 13:11:19] Further information can be found at the LHC@home message board.
[2025-11-26 13:11:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:11:19] Checking for apptainer binary...
[2025-11-26 13:11:19] apptainer is not installed, using version from CVMFS
[2025-11-26 13:11:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:11:20] 7950x-linux
[2025-11-26 13:11:20] apptainer works
[2025-11-26 13:11:20] Set ATHENA_PROC_NUMBER=10
[2025-11-26 13:11:20] Set ATHENA_CORE_NUMBER=10
[2025-11-26 13:11:20] Starting ATLAS job with PandaID=6896557302
[2025-11-26 13:11:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc512/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:05:36]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:05:36] 2025-11-27 13:05:02,785 | INFO     | monitor loop #4162: job 0:6896557302 is in state 'finished'
[2025-11-27 05:05:36] 2025-11-27 13:05:02,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,244 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 05:05:36] 2025-11-27 13:05:03,247 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.8681249999995
[2025-11-27 05:05:36] 2025-11-27 13:05:03,251 | INFO     | using path: /var/lib/multiboinc/boinc512/slots/1/PanDA_Pilot-6896557302/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,252 | INFO     | extracted standard info from prmon json
[2025-11-27 05:05:36] 2025-11-27 13:05:03,252 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:05:36] 2025-11-27 13:05:03,252 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:05:36] 2025-11-27 13:05:03,261 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:05:36] 2025-11-27 13:05:03,262 | INFO     | sum of square deviations: 255909514798.49792
[2025-11-27 05:05:36] 2025-11-27 13:05:03,274 | INFO     | sum of deviations: 1883052982877.5981
[2025-11-27 05:05:36] 2025-11-27 13:05:03,274 | INFO     | mean x: 1764220102.5010662
[2025-11-27 05:05:36] 2025-11-27 13:05:03,274 | INFO     | mean y: 3165680.405117271
[2025-11-27 05:05:36] 2025-11-27 13:05:03,274 | INFO     | intersect: -12978453737.235832
[2025-11-27 05:05:36] 2025-11-27 13:05:03,275 | INFO     | chi2: 6.384846785886655
[2025-11-27 05:05:36] 2025-11-27 13:05:03,275 | INFO     | sum of square deviations: 251838917851.00107
[2025-11-27 05:05:36] 2025-11-27 13:05:03,289 | INFO     | sum of deviations: 2233766992066.738
[2025-11-27 05:05:36] 2025-11-27 13:05:03,289 | INFO     | mean x: 1764219950.001072
[2025-11-27 05:05:36] 2025-11-27 13:05:03,289 | INFO     | mean y: 3178813.2647374063
[2025-11-27 05:05:36] 2025-11-27 13:05:03,289 | INFO     | intersect: -15645142441.790878
[2025-11-27 05:05:36] 2025-11-27 13:05:03,290 | INFO     | chi2: 3.0442036538361155
[2025-11-27 05:05:36] 2025-11-27 13:05:03,290 | INFO     | current chi2=3.0442036538361155 (change=52.321429849105286 %)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,290 | INFO     | sum of square deviations: 247811717065.99792
[2025-11-27 05:05:36] 2025-11-27 13:05:03,302 | INFO     | sum of deviations: 2276088409738.8164
[2025-11-27 05:05:36] 2025-11-27 13:05:03,303 | INFO     | mean x: 1764219797.5010777
[2025-11-27 05:05:36] 2025-11-27 13:05:03,303 | INFO     | mean y: 3180409.6864224137
[2025-11-27 05:05:36] 2025-11-27 13:05:03,303 | INFO     | intersect: -16200735534.508177
[2025-11-27 05:05:36] 2025-11-27 13:05:03,303 | INFO     | chi2: 2.8553144517925073
[2025-11-27 05:05:36] 2025-11-27 13:05:03,303 | INFO     | current chi2=2.8553144517925073 (change=6.204880603358509 %)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,303 | INFO     | right removable region: 927
[2025-11-27 05:05:36] 2025-11-27 13:05:03,304 | INFO     | sum of square deviations: 251838917241.00104
[2025-11-27 05:05:36] 2025-11-27 13:05:03,314 | INFO     | sum of deviations: 1577231759725.415
[2025-11-27 05:05:36] 2025-11-27 13:05:03,314 | INFO     | mean x: 1764220255.001072
[2025-11-27 05:05:36] 2025-11-27 13:05:03,315 | INFO     | mean y: 3177125.5862808144
[2025-11-27 05:05:36] 2025-11-27 13:05:03,315 | INFO     | intersect: -11045886489.453506
[2025-11-27 05:05:36] 2025-11-27 13:05:03,315 | INFO     | chi2: 3.9066414706418957
[2025-11-27 05:05:36] 2025-11-27 13:05:03,315 | INFO     | current chi2=3.9066414706418957 (change=38.81385722086069 %)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,316 | INFO     | sum of square deviations: 247811715845.99792
[2025-11-27 05:05:36] 2025-11-27 13:05:03,328 | INFO     | sum of deviations: 1482404762912.5562
[2025-11-27 05:05:36] 2025-11-27 13:05:03,328 | INFO     | time since job start (57208s) is within the limit (172800.0s)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,328 | INFO     | mean x: 1764220407.5010777
[2025-11-27 05:05:36] 2025-11-27 13:05:03,329 | INFO     | mean y: 3180715.9450431033
[2025-11-27 05:05:36] 2025-11-27 13:05:03,329 | INFO     | intersect: -10550350726.17771
[2025-11-27 05:05:36] 2025-11-27 13:05:03,329 | INFO     | chi2: 3.78362027171863
[2025-11-27 05:05:36] 2025-11-27 13:05:03,329 | INFO     | current chi2=3.78362027171863 (change=3.149027108009798 %)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,329 | INFO     | left removable region: 20
[2025-11-27 05:05:36] 2025-11-27 13:05:03,330 | INFO     | sum of square deviations: 231366108953.00085
[2025-11-27 05:05:36] 2025-11-27 13:05:03,339 | INFO     | sum of deviations: 1737501389908.01
[2025-11-27 05:05:36] 2025-11-27 13:05:03,339 | INFO     | mean x: 1764220377.0011024
[2025-11-27 05:05:36] 2025-11-27 13:05:03,339 | INFO     | mean y: 3200878.9900771775
[2025-11-27 05:05:36] 2025-11-27 13:05:03,339 | INFO     | intersect: -13245651215.27293
[2025-11-27 05:05:36] 2025-11-27 13:05:03,340 | INFO     | chi2: 0.14743863716568772
[2025-11-27 05:05:36] 2025-11-27 13:05:03,340 | INFO     | current memory leak: 7.51 B/s (using 907 data points, chi2=0.15)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,340 | INFO     | could have reported an average CPU frequency of 3999 MHz (35 samples)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,341 | INFO     | ..............................
[2025-11-27 05:05:36] 2025-11-27 13:05:03,341 | INFO     | . Timing measurements:
[2025-11-27 05:05:36] 2025-11-27 13:05:03,341 | INFO     | . get job = 0 s
[2025-11-27 05:05:36] 2025-11-27 13:05:03,341 | INFO     | . initial setup = 4 s
[2025-11-27 05:05:36] 2025-11-27 13:05:03,341 | INFO     | . payload setup = 6 s
[2025-11-27 05:05:36] 2025-11-27 13:05:03,341 | INFO     | . stage-in = 0 s
[2025-11-27 05:05:36] 2025-11-27 13:05:03,341 | INFO     | . payload execution = 57170 s
[2025-11-27 05:05:36] 2025-11-27 13:05:03,341 | INFO     | . stage-out = 3 s
[2025-11-27 05:05:36] 2025-11-27 13:05:03,341 | INFO     | . log creation = 0 s
[2025-11-27 05:05:36] 2025-11-27 13:05:03,341 | INFO     | ..............................
[2025-11-27 05:05:36] 2025-11-27 13:05:03,544 | INFO     | 
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | job summary report
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | --------------------------------------------------
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | PanDA job id: 6896557302
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | task id: 47556173
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | errors: (none)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | pilot state: finished 
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | transexitcode: 0
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | exeerrorcode: 0
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | exeerrordiag: 
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | exitcode: 0
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | exitmsg: OK
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | cpuconsumptiontime: 135827 s
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | nevents: 1000
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | neventsw: 0
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | pid: 2667527
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | pgrp: 2667527
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | corecount: 10
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | event service: False
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | sizes: {0: 2284155, 1: 2284354, 6: 2284616, 11: 2284644, 57180: 2336128, 57181: 2336127, 57185: 2345333, 57186: 2345389, 57192: 2345635}
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | --------------------------------------------------
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | 
[2025-11-27 05:05:36] 2025-11-27 13:05:03,545 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc512/slots/1
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,622 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:05:36] 2025-11-27 13:05:03,623 | INFO     | job 6896557302 has completed (purged errors)
[2025-11-27 05:05:36] 2025-11-27 13:05:03,623 | INFO     | overall cleanup function is called
[2025-11-27 05:05:36] 2025-11-27 13:05:04,676 | INFO     | --- collectZombieJob: --- 10, [2667527]
[2025-11-27 05:05:36] 2025-11-27 13:05:04,677 | INFO     | zombie collector waiting for pid 2667527
[2025-11-27 05:05:36] 2025-11-27 13:05:04,677 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:05:36] 2025-11-27 13:05:04,677 | INFO     | collected zombie processes
[2025-11-27 05:05:36] 2025-11-27 13:05:04,677 | INFO     | will attempt to kill all subprocesses of pid=2667527
[2025-11-27 05:05:36] 2025-11-27 13:05:05,042 | INFO     | process IDs to be killed: [2667527] (in reverse order)
[2025-11-27 05:05:36] 2025-11-27 13:05:05,200 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:05:36] 2025-11-27 13:05:05,201 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:05:36] 2025-11-27 13:05:05,206 | INFO     | did not find any defunct processes belonging to 2667527
[2025-11-27 05:05:36] 2025-11-27 13:05:05,212 | INFO     | did not find any defunct processes belonging to 2667527
[2025-11-27 05:05:36] 2025-11-27 13:05:05,213 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:05:36] 2025-11-27 13:05:05,213 | INFO     | ready for new job
[2025-11-27 05:05:36] 2025-11-27 13:05:05,213 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:05:36] 2025-11-27 13:05:05,216 | INFO     | ***************************************
[2025-11-27 05:05:36] 2025-11-27 13:05:05,216 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:05:36] 2025-11-27 13:05:05,216 | INFO     | ***************************************
[2025-11-27 05:05:36] 2025-11-27 13:05:05,216 | INFO     | 
[2025-11-27 05:05:36] 2025-11-27 13:05:05,217 | INFO     | architecture information:
[2025-11-27 05:05:36] 2025-11-27 13:05:05,217 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:05:36] 2025-11-27 13:05:05,236 | INFO     | cat /etc/os-release:
[2025-11-27 05:05:36] NAME="CentOS Linux"
[2025-11-27 05:05:36] VERSION="7 (Core)"
[2025-11-27 05:05:36] ID="centos"
[2025-11-27 05:05:36] ID_LIKE="rhel fedora"
[2025-11-27 05:05:36] VERSION_ID="7"
[2025-11-27 05:05:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:05:36] ANSI_COLOR="0;31"
[2025-11-27 05:05:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:05:36] HOME_URL="https://www.centos.org/"
[2025-11-27 05:05:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:05:36] 
[2025-11-27 05:05:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:05:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:05:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:05:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:05:36] 
[2025-11-27 05:05:36] 2025-11-27 13:05:05,236 | INFO     | ***************************************
[2025-11-27 05:05:36] 2025-11-27 13:05:05,739 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc512/slots/1
[2025-11-27 05:05:36] 2025-11-27 13:05:05,758 | INFO     | sufficient remaining disk space (186251214848 B)
[2025-11-27 05:05:36] 2025-11-27 13:05:05,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:05:36] 2025-11-27 13:05:05,758 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:05:36] 2025-11-27 13:05:05,758 | INFO     | update_server=False
[2025-11-27 05:05:36] 2025-11-27 13:05:05,758 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:05:36] 2025-11-27 13:05:06,013 | INFO     | all data control threads have been joined
[2025-11-27 05:05:36] 2025-11-27 13:05:06,208 | INFO     | all payload control threads have been joined
[2025-11-27 05:05:36] 2025-11-27 13:05:06,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:05:36] 2025-11-27 13:05:06,293 | INFO     | aborting loop
[2025-11-27 05:05:36] 2025-11-27 13:05:06,529 | INFO     | all job control threads have been joined
[2025-11-27 05:05:36] 2025-11-27 13:05:06,763 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:06,809 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:06,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:05:36] 2025-11-27 13:05:07,018 | INFO     | [data] control thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:07,051 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:07,052 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:07,098 | INFO     | [job] validate thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:07,213 | INFO     | [payload] control thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:07,297 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:07,455 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:07,534 | INFO     | [job] control thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:07,702 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:07,966 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:05:36] 2025-11-27 13:05:08,087 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:08,192 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:08,432 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:05:36] 2025-11-27 13:05:08,954 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:09,437 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:09,720 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:05:36] 2025-11-27 13:05:11,971 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:05:36] 2025-11-27 13:05:13,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137695595657024)>', '<ExcThread(monitor, started 137694948607744)>']
[2025-11-27 05:05:36] 2025-11-27 13:05:18,227 | INFO     | all workflow threads have been joined
[2025-11-27 05:05:36] 2025-11-27 13:05:18,228 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:05:36] 2025-11-27 13:05:18,228 | INFO     | traces error code: 0
[2025-11-27 05:05:36] 2025-11-27 13:05:18,228 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:05:36] 2025-11-27 13:05:36,647 | INFO     | PID=2660842 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:05:36] 2025-11-27 13:05:36,647 | INFO     | .. there are 14 such processes running
[2025-11-27 05:05:36] 2025-11-27 13:05:36,647 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:05:36] 2025-11-27 13:05:36,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:05:36] 2025-11-27 13:05:36,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:05:36] 2025-11-27 13:05:36,647 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:05:36] 2025-11-27 13:05:36,647 | INFO     | [monitor] control thread has ended
[2025-11-27 05:05:36] 2025-11-27 13:05:36,751 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:05:36] 2025-11-27 13:05:36,757 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:05:36] 2025-11-27 13:05:36,765 [wrapper] pilotpid: 2660842
[2025-11-27 05:05:36] 2025-11-27 13:05:36,771 [wrapper] Pilot exit status: 0
[2025-11-27 05:05:36] 2025-11-27 13:05:36,785 [wrapper] pandaids: 6896557302
[2025-11-27 05:05:36] 2025-11-27 13:05:36,832 [wrapper] cleanup supervisor_pilot 3902831 2660843
[2025-11-27 05:05:36] 2025-11-27 13:05:36,834 [wrapper] Test setup, not cleaning
[2025-11-27 05:05:36] 2025-11-27 13:05:36,836 [wrapper] apfmon messages muted
[2025-11-27 05:05:36] 2025-11-27 13:05:36,837 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:05:36] 2025-11-27 13:05:36,839 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:05:36]  *** Error codes and diagnostics ***
[2025-11-27 05:05:36]     "exeErrorCode": 0,
[2025-11-27 05:05:36]     "exeErrorDiag": "",
[2025-11-27 05:05:36]     "pilotErrorCode": 0,
[2025-11-27 05:05:36]     "pilotErrorDiag": "",
[2025-11-27 05:05:36]  *** Listing of results directory ***
[2025-11-27 05:05:36] total 1336036
[2025-11-27 05:05:36] -rw-r--r-- 1 root root    576529 Nov 24 20:09 pilot3.tar.gz
[2025-11-27 05:05:36] -rwx------ 1 4871 1028     36292 Nov 24 20:58 runpilot2-wrapper.sh
[2025-11-27 05:05:36] -rw-r--r-- 1 root root      5112 Nov 24 20:58 queuedata.json
[2025-11-27 05:05:36] -rw-r--r-- 1 root root       100 Nov 26 13:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:05:36] -rwxr-xr-x 1 root root      7986 Nov 26 13:11 run_atlas
[2025-11-27 05:05:36] -rw-r--r-- 1 root root       105 Nov 26 13:11 job.xml
[2025-11-27 05:05:36] -rw-r--r-- 1 root root      7066 Nov 26 13:11 init_data.xml
[2025-11-27 05:05:36] -rw-r--r-- 2 root root 411356478 Nov 26 13:11 EVNT.47483658._003062.pool.root.1
[2025-11-27 05:05:36] -rw-r--r-- 2 root root     15847 Nov 26 13:11 start_atlas.sh
[2025-11-27 05:05:36] drwxrwx--x 2 root root      4096 Nov 26 13:11 shared
[2025-11-27 05:05:36] -rw-r--r-- 2 root root    590098 Nov 26 13:11 input.tar.gz
[2025-11-27 05:05:36] -rw-r--r-- 1 root root         0 Nov 26 13:11 boinc_lockfile
[2025-11-27 05:05:36] -rw-r--r-- 1 root root      2784 Nov 26 13:11 pandaJob.out
[2025-11-27 05:05:36] -rw------- 1 root root    991538 Nov 26 13:11 agis_schedconf.cvmfs.json
[2025-11-27 05:05:36] drwxr-xr-x 5  320  320      4096 Nov 26 13:11 pilot3
[2025-11-27 05:05:36] -rw-r--r-- 1 root root       533 Nov 27 04:55 boinc_task_state.xml
[2025-11-27 05:05:36] -rw------- 1 root root 931821541 Nov 27 05:04 HITS.47556173._000446.pool.root.1
[2025-11-27 05:05:36] -rw------- 1 root root      1053 Nov 27 05:04 memory_monitor_summary.json
[2025-11-27 05:05:36] -rw------- 1 root root        95 Nov 27 05:04 pilot_heartbeat.json
[2025-11-27 05:05:36] -rw------- 1 root root   1516240 Nov 27 05:04 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:05:36] -rw------- 1 root root   2326069 Nov 27 05:04 log.47556173._000446.job.log.tgz.1
[2025-11-27 05:05:36] -rw------- 1 root root      8598 Nov 27 05:05 heartbeat.json
[2025-11-27 05:05:36] -rw-r--r-- 1 root root      8192 Nov 27 05:05 boinc_mmap_file
[2025-11-27 05:05:36] -rw-r--r-- 1 root root        29 Nov 27 05:05 wrapper_checkpoint.txt
[2025-11-27 05:05:36] -rw------- 1 root root       823 Nov 27 05:05 pilotlog.txt
[2025-11-27 05:05:36] -rw------- 1 root root   8176228 Nov 27 05:05 log.47556173._000446.job.log.1
[2025-11-27 05:05:36] -rw------- 1 root root       353 Nov 27 05:05 output.list
[2025-11-27 05:05:36] -rw-r--r-- 1 root root       620 Nov 27 05:05 runtime_log
[2025-11-27 05:05:36] -rw------- 1 root root  10526720 Nov 27 05:05 result.tar.gz
[2025-11-27 05:05:36] -rw-r--r-- 1 root root      9021 Nov 27 05:05 runtime_log.err
[2025-11-27 05:05:36] -rw------- 1 root root       662 Nov 27 05:05 L2XNDmbJ0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmS8LKDmHBe9Kn.diag
[2025-11-27 05:05:36] -rw-r--r-- 1 root root     21501 Nov 27 05:05 stderr.txt
[2025-11-27 05:05:36] HITS file was successfully produced:
[2025-11-27 05:05:36] -rw------- 1 root root 931821541 Nov 27 05:04 shared/HITS.pool.root.1
[2025-11-27 05:05:36]  *** Contents of shared directory: ***
[2025-11-27 05:05:36] total 1322584
[2025-11-27 05:05:36] -rw-r--r-- 2 root root 411356478 Nov 26 13:11 ATLAS.root_0
[2025-11-27 05:05:36] -rw-r--r-- 2 root root     15847 Nov 26 13:11 start_atlas.sh
[2025-11-27 05:05:36] -rw-r--r-- 2 root root    590098 Nov 26 13:11 input.tar.gz
[2025-11-27 05:05:36] -rw------- 1 root root 931821541 Nov 27 05:04 HITS.pool.root.1
[2025-11-27 05:05:36] -rw------- 1 root root  10526720 Nov 27 05:05 result.tar.gz
05:05:38 (2656962): run_atlas exited; CPU time 135859.712919
05:05:38 (2656962): called boinc_finish(0)

</stderr_txt>
]]>

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