Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:28:46 (3336382): wrapper (7.7.26015): starting
19:28:46 (3336382): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:28:46] Arguments: --nthreads 8
[2025-11-25 19:28:46] Threads: 8
[2025-11-25 19:28:46] Checking for CVMFS
[2025-11-25 19:28:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:28:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:28:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:28:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:28:48] 2.13.3.0 17216 29195 474072 153303 1 435 26519920 32935937 65026 16776704 0 513894727 99.678 406610198 48378 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:28:48] CVMFS is ok
[2025-11-25 19:28:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:28:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:28:48] Further information can be found at the LHC@home message board.
[2025-11-25 19:28:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:28:48] Checking for apptainer binary...
[2025-11-25 19:28:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:28:48] Running /usr/bin/apptainer --version
[2025-11-25 19:28:48] apptainer version 1.4.4-1.el9
[2025-11-25 19:28:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:28:49] c7-9-14.aglt2.org
[2025-11-25 19:28:49] apptainer works
[2025-11-25 19:28:49] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:28:49] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:28:49] Starting ATLAS job with PandaID=6896557303
[2025-11-25 19:28:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:34:46]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:34:46] 2025-11-26 07:33:54,248 | INFO     | PID=3356399 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 02:34:46] 2025-11-26 07:33:54,248 | INFO     | .. there are 104 such processes running
[2025-11-26 02:34:46] 2025-11-26 07:33:55,269 | INFO     | time since job start (25441s) is within the limit (172800.0s)
[2025-11-26 02:34:46] 2025-11-26 07:33:55,913 | INFO     | monitor loop #1510: job 0:6896557303 is in state 'finished'
[2025-11-26 02:34:46] 2025-11-26 07:33:55,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:34:46] 2025-11-26 07:33:57,276 | INFO     | time since job start (25443s) is within the limit (172800.0s)
[2025-11-26 02:34:46] 2025-11-26 07:33:58,438 | INFO     | monitor loop #1511: job 0:6896557303 is in state 'finished'
[2025-11-26 02:34:46] 2025-11-26 07:33:58,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:34:46] 2025-11-26 07:33:59,286 | INFO     | time since job start (25445s) is within the limit (172800.0s)
[2025-11-26 02:34:46] 2025-11-26 07:34:00,947 | INFO     | monitor loop #1512: job 0:6896557303 is in state 'finished'
[2025-11-26 02:34:46] 2025-11-26 07:34:00,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:34:46] 2025-11-26 07:34:01,293 | INFO     | time since job start (25447s) is within the limit (172800.0s)
[2025-11-26 02:34:46] 2025-11-26 07:34:03,300 | INFO     | time since job start (25449s) is within the limit (172800.0s)
[2025-11-26 02:34:46] 2025-11-26 07:34:03,451 | INFO     | monitor loop #1513: job 0:6896557303 is in state 'finished'
[2025-11-26 02:34:46] 2025-11-26 07:34:03,451 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:34:46] 2025-11-26 07:34:04,071 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 02:34:46] 2025-11-26 07:34:04,121 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.2772343750003
[2025-11-26 02:34:46] 2025-11-26 07:34:04,200 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6896557303/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:34:46] 2025-11-26 07:34:04,201 | INFO     | extracted standard info from prmon json
[2025-11-26 02:34:46] 2025-11-26 07:34:04,201 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:34:46] 2025-11-26 07:34:04,201 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:34:46] 2025-11-26 07:34:04,216 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:34:46] 2025-11-26 07:34:04,216 | INFO     | sum of square deviations: 22162704586.843372
[2025-11-26 02:34:46] 2025-11-26 07:34:04,238 | INFO     | sum of deviations: -272258890079.48196
[2025-11-26 02:34:46] 2025-11-26 07:34:04,238 | INFO     | mean x: 1764129731.2650602
[2025-11-26 02:34:46] 2025-11-26 07:34:04,238 | INFO     | mean y: 2743943.2771084337
[2025-11-26 02:34:46] 2025-11-26 07:34:04,238 | INFO     | intersect: 21674286814.24803
[2025-11-26 02:34:46] 2025-11-26 07:34:04,238 | INFO     | chi2: 20.73171316573008
[2025-11-26 02:34:46] 2025-11-26 07:34:04,239 | INFO     | sum of square deviations: 21371417306.243916
[2025-11-26 02:34:46] 2025-11-26 07:34:04,249 | INFO     | sum of deviations: -147114671632.73166
[2025-11-26 02:34:46] 2025-11-26 07:34:04,249 | INFO     | mean x: 1764129578.7804878
[2025-11-26 02:34:46] 2025-11-26 07:34:04,249 | INFO     | mean y: 2768071.6585365855
[2025-11-26 02:34:46] 2025-11-26 07:34:04,249 | INFO     | intersect: 12146527186.036789
[2025-11-26 02:34:46] 2025-11-26 07:34:04,249 | INFO     | chi2: 17.444613886597544
[2025-11-26 02:34:46] 2025-11-26 07:34:04,249 | INFO     | current chi2=17.444613886597544 (change=15.855415579288328 %)
[2025-11-26 02:34:46] 2025-11-26 07:34:04,249 | INFO     | right removable region: 409
[2025-11-26 02:34:46] 2025-11-26 07:34:04,250 | INFO     | sum of square deviations: 21371097056.24388
[2025-11-26 02:34:46] 2025-11-26 07:34:04,260 | INFO     | sum of deviations: -416712561278.14636
[2025-11-26 02:34:46] 2025-11-26 07:34:04,260 | INFO     | mean x: 1764129883.7804878
[2025-11-26 02:34:46] 2025-11-26 07:34:04,260 | INFO     | mean y: 2771747.131707317
[2025-11-26 02:34:46] 2025-11-26 07:34:04,260 | INFO     | intersect: 34401337265.91518
[2025-11-26 02:34:46] 2025-11-26 07:34:04,260 | INFO     | chi2: 17.396030438706966
[2025-11-26 02:34:46] 2025-11-26 07:34:04,260 | INFO     | current chi2=17.396030438706966 (change=16.089759203002398 %)
[2025-11-26 02:34:46] 2025-11-26 07:34:04,261 | INFO     | left removable region: 10
[2025-11-26 02:34:46] 2025-11-26 07:34:04,261 | INFO     | sum of square deviations: 19696769195.082787
[2025-11-26 02:34:46] 2025-11-26 07:34:04,263 | INFO     | sum of deviations: -286302525097.5641
[2025-11-26 02:34:46] 2025-11-26 07:34:04,263 | INFO     | mean x: 1764129853.3082707
[2025-11-26 02:34:46] 2025-11-26 07:34:04,263 | INFO     | mean y: 2806889.776942356
[2025-11-26 02:34:46] 2025-11-26 07:34:04,263 | INFO     | intersect: 25645328594.719444
[2025-11-26 02:34:46] 2025-11-26 07:34:04,271 | INFO     | chi2: 13.167003399270985
[2025-11-26 02:34:46] 2025-11-26 07:34:04,272 | INFO     | current memory leak: -14.54 B/s (using 399 data points, chi2=13.17)
[2025-11-26 02:34:46] 2025-11-26 07:34:04,272 | INFO     | could have reported an average CPU frequency of 3800 MHz (17 samples)
[2025-11-26 02:34:46] 2025-11-26 07:34:04,272 | INFO     | ..............................
[2025-11-26 02:34:46] 2025-11-26 07:34:04,272 | INFO     | . Timing measurements:
[2025-11-26 02:34:46] 2025-11-26 07:34:04,272 | INFO     | . get job = 0 s
[2025-11-26 02:34:46] 2025-11-26 07:34:04,272 | INFO     | . initial setup = 4 s
[2025-11-26 02:34:46] 2025-11-26 07:34:04,272 | INFO     | . payload setup = 34 s
[2025-11-26 02:34:46] 2025-11-26 07:34:04,272 | INFO     | . stage-in = 0 s
[2025-11-26 02:34:46] 2025-11-26 07:34:04,272 | INFO     | . payload execution = 25323 s
[2025-11-26 02:34:46] 2025-11-26 07:34:04,272 | INFO     | . stage-out = 5 s
[2025-11-26 02:34:46] 2025-11-26 07:34:04,273 | INFO     | . log creation = 1 s
[2025-11-26 02:34:46] 2025-11-26 07:34:04,273 | INFO     | ..............................
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | 
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | job summary report
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | --------------------------------------------------
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | PanDA job id: 6896557303
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | task id: 47556173
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | errors: (none)
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | pilot state: finished 
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | transexitcode: 0
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | exeerrorcode: 0
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | exeerrordiag: 
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | exitcode: 0
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | exitmsg: OK
[2025-11-26 02:34:46] 2025-11-26 07:34:04,388 | INFO     | cpuconsumptiontime: 136128 s
[2025-11-26 02:34:46] 2025-11-26 07:34:04,389 | INFO     | nevents: 1000
[2025-11-26 02:34:46] 2025-11-26 07:34:04,389 | INFO     | neventsw: 0
[2025-11-26 02:34:46] 2025-11-26 07:34:04,389 | INFO     | pid: 3387204
[2025-11-26 02:34:46] 2025-11-26 07:34:04,389 | INFO     | pgrp: 3387204
[2025-11-26 02:34:46] 2025-11-26 07:34:04,389 | INFO     | corecount: 8
[2025-11-26 02:34:46] 2025-11-26 07:34:04,389 | INFO     | event service: False
[2025-11-26 02:34:46] 2025-11-26 07:34:04,389 | INFO     | sizes: {0: 2284313, 1: 2284313, 11: 2284341, 22: 2284369, 27: 2284659, 33: 2284687, 25359: 2320969, 25365: 2329965, 25366: 2330021, 25398: 2330331}
[2025-11-26 02:34:46] 2025-11-26 07:34:04,389 | INFO     | --------------------------------------------------
[2025-11-26 02:34:46] 2025-11-26 07:34:04,389 | INFO     | 
[2025-11-26 02:34:46] 2025-11-26 07:34:04,389 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-26 02:34:46] 2025-11-26 07:34:04,437 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:34:46] 2025-11-26 07:34:04,438 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,439 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:34:46] 2025-11-26 07:34:04,439 | INFO     | job 6896557303 has completed (purged errors)
[2025-11-26 02:34:46] 2025-11-26 07:34:04,439 | INFO     | overall cleanup function is called
[2025-11-26 02:34:46] 2025-11-26 07:34:05,463 | INFO     | --- collectZombieJob: --- 10, [3387204]
[2025-11-26 02:34:46] 2025-11-26 07:34:05,463 | INFO     | zombie collector waiting for pid 3387204
[2025-11-26 02:34:46] 2025-11-26 07:34:05,464 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:34:46] 2025-11-26 07:34:05,464 | INFO     | collected zombie processes
[2025-11-26 02:34:46] 2025-11-26 07:34:05,464 | INFO     | will attempt to kill all subprocesses of pid=3387204
[2025-11-26 02:34:46] 2025-11-26 07:34:06,905 | INFO     | process IDs to be killed: [3387204] (in reverse order)
[2025-11-26 02:34:46] 2025-11-26 07:34:07,211 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:34:46] 2025-11-26 07:34:07,212 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:34:46] 2025-11-26 07:34:07,284 | INFO     | did not find any defunct processes belonging to 3387204
[2025-11-26 02:34:46] 2025-11-26 07:34:07,352 | INFO     | did not find any defunct processes belonging to 3387204
[2025-11-26 02:34:46] 2025-11-26 07:34:07,354 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:34:46] 2025-11-26 07:34:07,354 | INFO     | ready for new job
[2025-11-26 02:34:46] 2025-11-26 07:34:07,354 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:34:46] 2025-11-26 07:34:07,420 | INFO     | ***************************************
[2025-11-26 02:34:46] 2025-11-26 07:34:07,420 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:34:46] 2025-11-26 07:34:07,420 | INFO     | ***************************************
[2025-11-26 02:34:46] 2025-11-26 07:34:07,420 | INFO     | 
[2025-11-26 02:34:46] 2025-11-26 07:34:07,434 | INFO     | architecture information:
[2025-11-26 02:34:46] 2025-11-26 07:34:07,437 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:34:46] 2025-11-26 07:34:07,495 | INFO     | cat /etc/os-release:
[2025-11-26 02:34:46] NAME="CentOS Linux"
[2025-11-26 02:34:46] VERSION="7 (Core)"
[2025-11-26 02:34:46] ID="centos"
[2025-11-26 02:34:46] ID_LIKE="rhel fedora"
[2025-11-26 02:34:46] VERSION_ID="7"
[2025-11-26 02:34:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:34:46] ANSI_COLOR="0;31"
[2025-11-26 02:34:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:34:46] HOME_URL="https://www.centos.org/"
[2025-11-26 02:34:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:34:46] 
[2025-11-26 02:34:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:34:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:34:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:34:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:34:46] 
[2025-11-26 02:34:46] 2025-11-26 07:34:07,495 | INFO     | ***************************************
[2025-11-26 02:34:46] 2025-11-26 07:34:07,998 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-26 02:34:46] 2025-11-26 07:34:08,044 | INFO     | sufficient remaining disk space (58581843968 B)
[2025-11-26 02:34:46] 2025-11-26 07:34:08,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:34:46] 2025-11-26 07:34:08,044 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:34:46] 2025-11-26 07:34:08,044 | INFO     | update_server=False
[2025-11-26 02:34:46] 2025-11-26 07:34:08,044 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:34:46] 2025-11-26 07:34:08,129 | INFO     | all payload control threads have been joined
[2025-11-26 02:34:46] 2025-11-26 07:34:08,474 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 02:34:46] 2025-11-26 07:34:08,474 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 02:34:46] 2025-11-26 07:34:08,475 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:34:46] 2025-11-26 07:34:08,475 | INFO     | will abort loop
[2025-11-26 02:34:46] 2025-11-26 07:34:08,513 | INFO     | all data control threads have been joined
[2025-11-26 02:34:46] 2025-11-26 07:34:08,817 | INFO     | all job control threads have been joined
[2025-11-26 02:34:46] 2025-11-26 07:34:08,982 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:34:46] 2025-11-26 07:34:09,054 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:09,135 | INFO     | [payload] control thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:09,386 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:09,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:34:46] 2025-11-26 07:34:09,441 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:34:46] 2025-11-26 07:34:09,485 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:09,503 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:09,519 | INFO     | [data] control thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:09,637 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:09,765 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:09,778 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:09,823 | INFO     | [job] control thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:10,114 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:10,412 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:10,449 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:10,455 | INFO     | [job] validate thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:10,988 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:13,446 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:34:46] 2025-11-26 07:34:37,862 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:34:46] 2025-11-26 07:34:38,022 | INFO     | PID=3356399 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 02:34:46] 2025-11-26 07:34:38,022 | INFO     | .. there are 104 such processes running
[2025-11-26 02:34:46] 2025-11-26 07:34:38,023 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:34:46] 2025-11-26 07:34:38,023 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:34:46] 2025-11-26 07:34:38,023 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:34:46] 2025-11-26 07:34:39,106 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140057676678976)>', '<ExcThread(monitor, started 140057189013248)>']
[2025-11-26 02:34:46] 2025-11-26 07:34:40,035 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:34:46] 2025-11-26 07:34:40,035 | INFO     | [monitor] control thread has ended
[2025-11-26 02:34:46] 2025-11-26 07:34:44,131 | INFO     | all workflow threads have been joined
[2025-11-26 02:34:46] 2025-11-26 07:34:44,131 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:34:46] 2025-11-26 07:34:44,132 | INFO     | traces error code: 0
[2025-11-26 02:34:46] 2025-11-26 07:34:44,132 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:34:46] 2025-11-26 07:34:45,209 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:34:46] 2025-11-26 07:34:45,236 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:34:46] 2025-11-26 07:34:45,262 [wrapper] pilotpid: 3356399
[2025-11-26 02:34:46] 2025-11-26 07:34:45,286 [wrapper] Pilot exit status: 0
[2025-11-26 02:34:46] 2025-11-26 07:34:45,332 [wrapper] pandaids: 6896557303
[2025-11-26 02:34:46] 2025-11-26 07:34:45,643 [wrapper] cleanup supervisor_pilot 3543308 3356400
[2025-11-26 02:34:46] 2025-11-26 07:34:45,646 [wrapper] Test setup, not cleaning
[2025-11-26 02:34:46] 2025-11-26 07:34:45,670 [wrapper] apfmon messages muted
[2025-11-26 02:34:46] 2025-11-26 07:34:45,703 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:34:46] 2025-11-26 07:34:45,730 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:34:46]  *** Error codes and diagnostics ***
[2025-11-26 02:34:46]     "exeErrorCode": 0,
[2025-11-26 02:34:46]     "exeErrorDiag": "",
[2025-11-26 02:34:46]     "pilotErrorCode": 0,
[2025-11-26 02:34:46]     "pilotErrorDiag": "",
[2025-11-26 02:34:46]  *** Listing of results directory ***
[2025-11-26 02:34:46] total 1320140
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 02:34:46] -rwx------. 1 boincer umatlas     36292 Nov 24 23:58 runpilot2-wrapper.sh
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:58 queuedata.json
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:34:46] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:28 run_atlas
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:28 job.xml
[2025-11-26 02:34:46] -rw-r--r--. 2 boincer umatlas 411356478 Nov 25 19:28 EVNT.47483658._003062.pool.root.1
[2025-11-26 02:34:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:28 start_atlas.sh
[2025-11-26 02:34:46] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:28 shared
[2025-11-26 02:34:46] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 19:28 input.tar.gz
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:28 boinc_lockfile
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 19:28 pandaJob.out
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas        57 Nov 25 19:28 setup.sh.local
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas    991877 Nov 25 19:29 agis_schedconf.cvmfs.json
[2025-11-26 02:34:46] drwx------. 5 boincer umatlas      4096 Nov 25 19:29 pilot3
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas       533 Nov 26 02:03 boinc_task_state.xml
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas      7172 Nov 26 02:30 init_data.xml
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas 926758180 Nov 26 02:32 HITS.47556173._000447.pool.root.1
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas      1052 Nov 26 02:33 memory_monitor_summary.json
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas   1516240 Nov 26 02:33 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas   1686689 Nov 26 02:33 log.47556173._000447.job.log.tgz.1
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas      8581 Nov 26 02:34 heartbeat.json
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas        95 Nov 26 02:34 pilot_heartbeat.json
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas      5012 Nov 26 02:34 pilotlog.txt
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 02:34 boinc_mmap_file
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas        29 Nov 26 02:34 wrapper_checkpoint.txt
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas   3207033 Nov 26 02:34 log.47556173._000447.job.log.1
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas       353 Nov 26 02:34 output.list
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas       620 Nov 26 02:34 runtime_log
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas   4915200 Nov 26 02:34 result.tar.gz
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas      9356 Nov 26 02:34 runtime_log.err
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas       659 Nov 26 02:34 kjZNDmbJ0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmT8LKDmj9rLNm.diag
[2025-11-26 02:34:46] -rw-r--r--. 1 boincer umatlas     21867 Nov 26 02:34 stderr.txt
[2025-11-26 02:34:46] HITS file was successfully produced:
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas 926758180 Nov 26 02:32 shared/HITS.pool.root.1
[2025-11-26 02:34:46]  *** Contents of shared directory: ***
[2025-11-26 02:34:46] total 1312160
[2025-11-26 02:34:46] -rw-r--r--. 2 boincer umatlas 411356478 Nov 25 19:28 ATLAS.root_0
[2025-11-26 02:34:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:28 start_atlas.sh
[2025-11-26 02:34:46] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 19:28 input.tar.gz
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas 926758180 Nov 26 02:32 HITS.pool.root.1
[2025-11-26 02:34:46] -rw-------. 1 boincer umatlas   4915200 Nov 26 02:34 result.tar.gz
02:34:48 (3336382): run_atlas exited; CPU time 136571.220467
02:34:48 (3336382): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN