Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:12:59 (3495729): wrapper (7.7.26015): starting
15:12:59 (3495729): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:12:59] Arguments: --nthreads 8
[2025-11-26 15:12:59] Threads: 8
[2025-11-26 15:12:59] Checking for CVMFS
[2025-11-26 15:13:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:13:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:13:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:13:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:13:01] 2.13.3.0 11600 30467 354932 153333 2 751 28012767 32935937 22462 16776704 0 122940323 99.585 126450142 38629 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 15:13:01] CVMFS is ok
[2025-11-26 15:13:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:13:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:13:01] Further information can be found at the LHC@home message board.
[2025-11-26 15:13:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:13:01] Checking for apptainer binary...
[2025-11-26 15:13:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:13:01] Running /usr/bin/apptainer --version
[2025-11-26 15:13:01] apptainer version 1.4.4-1.el9
[2025-11-26 15:13:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:13:02] c6-2-29-4.aglt2.org
[2025-11-26 15:13:02] apptainer works
[2025-11-26 15:13:02] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:13:02] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:13:02] Starting ATLAS job with PandaID=6896558419
[2025-11-26 15:13:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:24:27]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:24:27] 2025-11-28 01:23:24,184 | INFO     | monitor loop #5796: job 0:6896558419 is in state 'finished'
[2025-11-27 20:24:27] 2025-11-28 01:23:24,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:24:27] 2025-11-28 01:23:25,037 | INFO     | time since job start (104991s) is within the limit (172800.0s)
[2025-11-27 20:24:27] 2025-11-28 01:23:26,777 | INFO     | monitor loop #5797: job 0:6896558419 is in state 'finished'
[2025-11-27 20:24:27] 2025-11-28 01:23:26,777 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:24:27] 2025-11-28 01:23:28,466 | INFO     | PID=3499532 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:24:27] 2025-11-28 01:23:28,466 | INFO     | .. there are 39 such processes running
[2025-11-27 20:24:27] 2025-11-28 01:23:29,298 | INFO     | monitor loop #5798: job 0:6896558419 is in state 'finished'
[2025-11-27 20:24:27] 2025-11-28 01:23:29,298 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:24:27] 2025-11-28 01:23:29,476 | INFO     | time since job start (104995s) is within the limit (172800.0s)
[2025-11-27 20:24:27] 2025-11-28 01:23:31,488 | INFO     | time since job start (104997s) is within the limit (172800.0s)
[2025-11-27 20:24:27] 2025-11-28 01:23:31,819 | INFO     | monitor loop #5799: job 0:6896558419 is in state 'finished'
[2025-11-27 20:24:27] 2025-11-28 01:23:31,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:24:27] 2025-11-28 01:23:33,507 | INFO     | time since job start (104999s) is within the limit (172800.0s)
[2025-11-27 20:24:27] 2025-11-28 01:23:34,332 | INFO     | monitor loop #5800: job 0:6896558419 is in state 'finished'
[2025-11-27 20:24:27] 2025-11-28 01:23:34,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:24:27] 2025-11-28 01:23:35,514 | INFO     | time since job start (105001s) is within the limit (172800.0s)
[2025-11-27 20:24:27] 2025-11-28 01:23:35,755 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 20:24:27] 2025-11-28 01:23:35,842 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2864.582928571428
[2025-11-27 20:24:27] 2025-11-28 01:23:35,890 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896558419/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:24:27] 2025-11-28 01:23:35,895 | INFO     | extracted standard info from prmon json
[2025-11-27 20:24:27] 2025-11-28 01:23:35,895 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:24:27] 2025-11-28 01:23:35,895 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:24:27] 2025-11-28 01:23:35,999 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:24:27] 2025-11-28 01:23:36,014 | INFO     | sum of square deviations: 1575282393899.9534
[2025-11-27 20:24:27] 2025-11-28 01:23:36,151 | INFO     | sum of deviations: 2848022664059.093
[2025-11-27 20:24:27] 2025-11-28 01:23:36,151 | INFO     | mean x: 1764240506.004654
[2025-11-27 20:24:27] 2025-11-28 01:23:36,151 | INFO     | mean y: 2997869.488074462
[2025-11-27 20:24:27] 2025-11-28 01:23:36,151 | INFO     | intersect: -3186650516.99129
[2025-11-27 20:24:27] 2025-11-28 01:23:36,153 | INFO     | chi2: 19.103168695187797
[2025-11-27 20:24:27] 2025-11-28 01:23:36,155 | INFO     | sum of square deviations: 1561580695621.8643
[2025-11-27 20:24:27] 2025-11-28 01:23:36,203 | INFO     | sum of deviations: 3441000678665.021
[2025-11-27 20:24:27] 2025-11-28 01:23:36,203 | INFO     | mean x: 1764240353.5192533
[2025-11-27 20:24:27] 2025-11-28 01:23:36,203 | INFO     | mean y: 3004468.771878646
[2025-11-27 20:24:27] 2025-11-28 01:23:36,203 | INFO     | intersect: -3884564243.372342
[2025-11-27 20:24:27] 2025-11-28 01:23:36,205 | INFO     | chi2: 15.994392479544924
[2025-11-27 20:24:27] 2025-11-28 01:23:36,205 | INFO     | current chi2=15.994392479544924 (change=16.27361546791969 %)
[2025-11-27 20:24:27] 2025-11-28 01:23:36,205 | INFO     | right removable region: 1713
[2025-11-27 20:24:27] 2025-11-28 01:23:36,207 | INFO     | sum of square deviations: 1561575447791.8662
[2025-11-27 20:24:27] 2025-11-28 01:23:36,261 | INFO     | sum of deviations: 2183478386501.6287
[2025-11-27 20:24:27] 2025-11-28 01:23:36,261 | INFO     | mean x: 1764240658.5192533
[2025-11-27 20:24:27] 2025-11-28 01:23:36,261 | INFO     | mean y: 3005262.283547258
[2025-11-27 20:24:27] 2025-11-28 01:23:36,261 | INFO     | intersect: -2463850471.079408
[2025-11-27 20:24:27] 2025-11-28 01:23:36,263 | INFO     | chi2: 15.583358498748916
[2025-11-27 20:24:27] 2025-11-28 01:23:36,263 | INFO     | current chi2=15.583358498748916 (change=18.42526887869415 %)
[2025-11-27 20:24:27] 2025-11-28 01:23:36,264 | INFO     | left removable region: 10
[2025-11-27 20:24:27] 2025-11-28 01:23:36,265 | INFO     | sum of square deviations: 1531707279604.955
[2025-11-27 20:24:27] 2025-11-28 01:23:36,317 | INFO     | sum of deviations: 2651488142735.7183
[2025-11-27 20:24:27] 2025-11-28 01:23:36,318 | INFO     | mean x: 1764240628.0487375
[2025-11-27 20:24:27] 2025-11-28 01:23:36,318 | INFO     | mean y: 3015966.726365238
[2025-11-27 20:24:27] 2025-11-28 01:23:36,318 | INFO     | intersect: -3051003014.8967547
[2025-11-27 20:24:27] 2025-11-28 01:23:36,320 | INFO     | chi2: 11.318976986592077
[2025-11-27 20:24:27] 2025-11-28 01:23:36,320 | INFO     | current memory leak: 1.73 B/s (using 1703 data points, chi2=11.32)
[2025-11-27 20:24:27] 2025-11-28 01:23:36,321 | INFO     | could have reported an average CPU frequency of 2825 MHz (60 samples)
[2025-11-27 20:24:27] 2025-11-28 01:23:36,322 | INFO     | ..............................
[2025-11-27 20:24:27] 2025-11-28 01:23:36,322 | INFO     | . Timing measurements:
[2025-11-27 20:24:27] 2025-11-28 01:23:36,322 | INFO     | . get job = 0 s
[2025-11-27 20:24:27] 2025-11-28 01:23:36,322 | INFO     | . initial setup = 4 s
[2025-11-27 20:24:27] 2025-11-28 01:23:36,322 | INFO     | . payload setup = 29 s
[2025-11-27 20:24:27] 2025-11-28 01:23:36,322 | INFO     | . stage-in = 0 s
[2025-11-27 20:24:27] 2025-11-28 01:23:36,322 | INFO     | . payload execution = 104872 s
[2025-11-27 20:24:27] 2025-11-28 01:23:36,322 | INFO     | . stage-out = 13 s
[2025-11-27 20:24:27] 2025-11-28 01:23:36,322 | INFO     | . log creation = 6 s
[2025-11-27 20:24:27] 2025-11-28 01:23:36,322 | INFO     | ..............................
[2025-11-27 20:24:27] 2025-11-28 01:23:36,468 | INFO     | 
[2025-11-27 20:24:27] 2025-11-28 01:23:36,468 | INFO     | job summary report
[2025-11-27 20:24:27] 2025-11-28 01:23:36,468 | INFO     | --------------------------------------------------
[2025-11-27 20:24:27] 2025-11-28 01:23:36,468 | INFO     | PanDA job id: 6896558419
[2025-11-27 20:24:27] 2025-11-28 01:23:36,468 | INFO     | task id: 47556161
[2025-11-27 20:24:27] 2025-11-28 01:23:36,469 | INFO     | errors: (none)
[2025-11-27 20:24:27] 2025-11-28 01:23:36,469 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:24:27] 2025-11-28 01:23:36,469 | INFO     | pilot state: finished 
[2025-11-27 20:24:27] 2025-11-28 01:23:36,469 | INFO     | transexitcode: 0
[2025-11-27 20:24:27] 2025-11-28 01:23:36,469 | INFO     | exeerrorcode: 0
[2025-11-27 20:24:27] 2025-11-28 01:23:36,469 | INFO     | exeerrordiag: 
[2025-11-27 20:24:27] 2025-11-28 01:23:36,469 | INFO     | exitcode: 0
[2025-11-27 20:24:27] 2025-11-28 01:23:36,469 | INFO     | exitmsg: OK
[2025-11-27 20:24:27] 2025-11-28 01:23:36,469 | INFO     | cpuconsumptiontime: 253194 s
[2025-11-27 20:24:27] 2025-11-28 01:23:36,469 | INFO     | nevents: 1000
[2025-11-27 20:24:27] 2025-11-28 01:23:36,469 | INFO     | neventsw: 0
[2025-11-27 20:24:27] 2025-11-28 01:23:36,482 | INFO     | pid: 3510123
[2025-11-27 20:24:27] 2025-11-28 01:23:36,482 | INFO     | pgrp: 3510123
[2025-11-27 20:24:27] 2025-11-28 01:23:36,482 | INFO     | corecount: 8
[2025-11-27 20:24:27] 2025-11-28 01:23:36,482 | INFO     | event service: False
[2025-11-27 20:24:27] 2025-11-28 01:23:36,482 | INFO     | sizes: {0: 2284040, 1: 2284239, 12: 2284239, 19: 2284529, 23: 2284557, 104906: 2356167, 104907: 2356294, 104921: 2365344, 104923: 2365400, 104958: 2365646}
[2025-11-27 20:24:27] 2025-11-28 01:23:36,482 | INFO     | --------------------------------------------------
[2025-11-27 20:24:27] 2025-11-28 01:23:36,482 | INFO     | 
[2025-11-27 20:24:27] 2025-11-28 01:23:36,482 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 20:24:27] 2025-11-28 01:23:36,563 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,563 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,563 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,564 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,565 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:24:27] 2025-11-28 01:23:36,565 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,565 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:24:27] 2025-11-28 01:23:36,565 | INFO     | job 6896558419 has completed (purged errors)
[2025-11-27 20:24:27] 2025-11-28 01:23:36,565 | INFO     | overall cleanup function is called
[2025-11-27 20:24:27] 2025-11-28 01:23:37,596 | INFO     | --- collectZombieJob: --- 10, [3510123]
[2025-11-27 20:24:27] 2025-11-28 01:23:37,596 | INFO     | zombie collector waiting for pid 3510123
[2025-11-27 20:24:27] 2025-11-28 01:23:37,596 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:24:27] 2025-11-28 01:23:37,596 | INFO     | collected zombie processes
[2025-11-27 20:24:27] 2025-11-28 01:23:37,596 | INFO     | will attempt to kill all subprocesses of pid=3510123
[2025-11-27 20:24:27] 2025-11-28 01:23:41,666 | INFO     | process IDs to be killed: [3510123] (in reverse order)
[2025-11-27 20:24:27] 2025-11-28 01:23:42,740 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:24:27] 2025-11-28 01:23:42,740 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:24:27] 2025-11-28 01:23:42,924 | INFO     | did not find any defunct processes belonging to 3510123
[2025-11-27 20:24:27] 2025-11-28 01:23:43,049 | INFO     | did not find any defunct processes belonging to 3510123
[2025-11-27 20:24:27] 2025-11-28 01:23:43,069 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:24:27] 2025-11-28 01:23:43,070 | INFO     | ready for new job
[2025-11-27 20:24:27] 2025-11-28 01:23:43,070 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:24:27] 2025-11-28 01:23:43,124 | INFO     | ***************************************
[2025-11-27 20:24:27] 2025-11-28 01:23:43,132 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:24:27] 2025-11-28 01:23:43,132 | INFO     | ***************************************
[2025-11-27 20:24:27] 2025-11-28 01:23:43,132 | INFO     | 
[2025-11-27 20:24:27] 2025-11-28 01:23:43,135 | INFO     | architecture information:
[2025-11-27 20:24:27] 2025-11-28 01:23:43,140 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:24:27] 2025-11-28 01:23:43,305 | INFO     | cat /etc/os-release:
[2025-11-27 20:24:27] NAME="CentOS Linux"
[2025-11-27 20:24:27] VERSION="7 (Core)"
[2025-11-27 20:24:27] ID="centos"
[2025-11-27 20:24:27] ID_LIKE="rhel fedora"
[2025-11-27 20:24:27] VERSION_ID="7"
[2025-11-27 20:24:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:24:27] ANSI_COLOR="0;31"
[2025-11-27 20:24:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:24:27] HOME_URL="https://www.centos.org/"
[2025-11-27 20:24:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:24:27] 
[2025-11-27 20:24:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:24:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:24:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:24:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:24:27] 
[2025-11-27 20:24:27] 2025-11-28 01:23:43,306 | INFO     | ***************************************
[2025-11-27 20:24:27] 2025-11-28 01:23:43,809 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 20:24:27] 2025-11-28 01:23:43,957 | INFO     | sufficient remaining disk space (68843208704 B)
[2025-11-27 20:24:27] 2025-11-28 01:23:43,957 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:24:27] 2025-11-28 01:23:43,958 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:24:27] 2025-11-28 01:23:43,958 | INFO     | update_server=False
[2025-11-27 20:24:27] 2025-11-28 01:23:43,958 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:24:27] 2025-11-28 01:23:43,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:24:27] 2025-11-28 01:23:43,967 | INFO     | aborting loop
[2025-11-27 20:24:27] 2025-11-28 01:23:43,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:24:27] 2025-11-28 01:23:44,355 | INFO     | all data control threads have been joined
[2025-11-27 20:24:27] 2025-11-28 01:23:44,466 | INFO     | all job control threads have been joined
[2025-11-27 20:24:27] 2025-11-28 01:23:44,964 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:44,974 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:44,974 | INFO     | all payload control threads have been joined
[2025-11-27 20:24:27] 2025-11-28 01:23:45,121 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:45,122 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:45,122 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:45,122 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:45,201 | INFO     | [job] validate thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:45,298 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:45,321 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:24:27] 2025-11-28 01:23:45,360 | INFO     | [data] control thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:45,406 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:45,472 | INFO     | [job] control thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:45,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:24:27] 2025-11-28 01:23:45,981 | INFO     | [payload] control thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:46,199 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:46,623 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:47,328 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:47,993 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:24:27] 2025-11-28 01:23:52,127 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:24:27] 2025-11-28 01:23:54,213 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140165279848256)>', '<ExcThread(monitor, started 140164462515968)>']
[2025-11-27 20:24:27] 2025-11-28 01:23:59,260 | INFO     | all workflow threads have been joined
[2025-11-27 20:24:27] 2025-11-28 01:23:59,260 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:24:27] 2025-11-28 01:23:59,260 | INFO     | traces error code: 0
[2025-11-27 20:24:27] 2025-11-28 01:23:59,261 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:24:27] 2025-11-28 01:24:11,805 | INFO     | PID=3499532 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:24:27] 2025-11-28 01:24:11,805 | INFO     | .. there are 39 such processes running
[2025-11-27 20:24:27] 2025-11-28 01:24:11,807 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:24:27] 2025-11-28 01:24:11,807 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:24:27] 2025-11-28 01:24:11,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:24:27] 2025-11-28 01:24:11,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:24:27] 2025-11-28 01:24:11,808 | INFO     | [monitor] control thread has ended
[2025-11-27 20:24:27] 2025-11-28 01:24:12,137 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:24:27] 2025-11-28 01:24:12,150 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:24:27] 2025-11-28 01:24:12,161 [wrapper] pilotpid: 3499532
[2025-11-27 20:24:27] 2025-11-28 01:24:12,192 [wrapper] Pilot exit status: 0
[2025-11-27 20:24:27] 2025-11-28 01:24:12,308 [wrapper] pandaids: 6896558419
[2025-11-27 20:24:27] 2025-11-28 01:24:13,007 [wrapper] cleanup supervisor_pilot  987841 3499533
[2025-11-27 20:24:27] 2025-11-28 01:24:13,045 [wrapper] Test setup, not cleaning
[2025-11-27 20:24:27] 2025-11-28 01:24:13,076 [wrapper] apfmon messages muted
[2025-11-27 20:24:27] 2025-11-28 01:24:13,124 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:24:27] 2025-11-28 01:24:13,145 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:24:27]  *** Error codes and diagnostics ***
[2025-11-27 20:24:27]     "exeErrorCode": 0,
[2025-11-27 20:24:27]     "exeErrorDiag": "",
[2025-11-27 20:24:27]     "pilotErrorCode": 0,
[2025-11-27 20:24:27]     "pilotErrorDiag": "",
[2025-11-27 20:24:27]  *** Listing of results directory ***
[2025-11-27 20:24:27] total 1331728
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:01 queuedata.json
[2025-11-27 20:24:27] -rwx------. 1 boincer umatlas     36292 Nov 25 00:02 runpilot2-wrapper.sh
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas       100 Nov 26 15:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:24:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 15:12 run_atlas
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas       105 Nov 26 15:12 job.xml
[2025-11-27 20:24:27] -rw-r--r--. 2 boincer umatlas 408801381 Nov 26 15:12 EVNT.47483658._002086.pool.root.1
[2025-11-27 20:24:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 15:12 shared
[2025-11-27 20:24:27] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 15:12 input.tar.gz
[2025-11-27 20:24:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:12 start_atlas.sh
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas         0 Nov 26 15:12 boinc_lockfile
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 15:13 pandaJob.out
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas        57 Nov 26 15:13 setup.sh.local
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas    991522 Nov 26 15:13 agis_schedconf.cvmfs.json
[2025-11-27 20:24:27] drwx------. 5 boincer umatlas      4096 Nov 26 15:13 pilot3
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas       533 Nov 27 19:47 boinc_task_state.xml
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas      6844 Nov 27 20:19 init_data.xml
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas 920618032 Nov 27 20:21 HITS.47556161._000700.pool.root.1
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas      1058 Nov 27 20:22 memory_monitor_summary.json
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:22 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas   2621154 Nov 27 20:22 log.47556161._000700.job.log.tgz.1
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas      7964 Nov 27 20:23 heartbeat.json
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas        95 Nov 27 20:24 pilot_heartbeat.json
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas       823 Nov 27 20:24 pilotlog.txt
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas  12559374 Nov 27 20:24 log.47556161._000700.job.log.1
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas       353 Nov 27 20:24 output.list
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:24 runtime_log
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas  15196160 Nov 27 20:24 result.tar.gz
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas      9349 Nov 27 20:24 runtime_log.err
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas       664 Nov 27 20:24 CrUMDmgN0h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqKJKDmLSNqXn.diag
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:24 wrapper_checkpoint.txt
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:24 boinc_mmap_file
[2025-11-27 20:24:27] -rw-r--r--. 1 boincer umatlas     21898 Nov 27 20:24 stderr.txt
[2025-11-27 20:24:27] HITS file was successfully produced:
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas 920618032 Nov 27 20:21 shared/HITS.pool.root.1
[2025-11-27 20:24:27]  *** Contents of shared directory: ***
[2025-11-27 20:24:27] total 1313708
[2025-11-27 20:24:27] -rw-r--r--. 2 boincer umatlas 408801381 Nov 26 15:12 ATLAS.root_0
[2025-11-27 20:24:27] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 15:12 input.tar.gz
[2025-11-27 20:24:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:12 start_atlas.sh
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas 920618032 Nov 27 20:21 HITS.pool.root.1
[2025-11-27 20:24:27] -rw-------. 1 boincer umatlas  15196160 Nov 27 20:24 result.tar.gz
20:24:28 (3495729): run_atlas exited; CPU time 256179.879385
20:24:28 (3495729): called boinc_finish(0)

</stderr_txt>
]]>

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