Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:23:43 (20836): wrapper (7.7.26015): starting
19:23:43 (20836): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 19:23:43] Arguments: --nthreads 12
[2025-11-25 19:23:43] Threads: 12
[2025-11-25 19:23:43] Checking for CVMFS
[2025-11-25 19:23:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:23:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:23:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:23:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:23:44] 2.11.2.0 2925 286957 94832 153303 0 81 16908529 20275201 1 130560 1 129877100 99.975 16193319 14058 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 19:23:44] CVMFS is ok
[2025-11-25 19:23:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:23:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:23:44] Further information can be found at the LHC@home message board.
[2025-11-25 19:23:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:23:44] Checking for apptainer binary...
[2025-11-25 19:23:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:23:44] Running /usr/bin/apptainer --version
[2025-11-25 19:23:44] apptainer version 1.3.2-1.el7
[2025-11-25 19:23:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:23:45] c-205-9.aglt2.org
[2025-11-25 19:23:45] apptainer works
[2025-11-25 19:23:45] Set ATHENA_PROC_NUMBER=12
[2025-11-25 19:23:45] Set ATHENA_CORE_NUMBER=12
[2025-11-25 19:23:45] Starting ATLAS job with PandaID=6894238229
[2025-11-25 19:23:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:05:28]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:05:28] 2025-11-26 04:04:23,235 | INFO     | time since job start (13223s) is within the limit (172800.0s)
[2025-11-25 23:05:28] 2025-11-26 04:04:24,182 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 23:05:28] 2025-11-26 04:04:24,186 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-25 23:05:28] 2025-11-26 04:04:24,189 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894238229/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:05:28] 2025-11-26 04:04:24,189 | INFO     | extracted standard info from prmon json
[2025-11-25 23:05:28] 2025-11-26 04:04:24,189 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:05:28] 2025-11-26 04:04:24,189 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:05:28] 2025-11-26 04:04:24,190 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 23:05:28] 2025-11-26 04:04:24,190 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 23:05:28] 2025-11-26 04:04:24,193 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:05:28] 2025-11-26 04:04:24,194 | INFO     | sum of square deviations: 3168461268.0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,195 | INFO     | sum of deviations: -13916142524.000002
[2025-11-25 23:05:28] 2025-11-26 04:04:24,195 | INFO     | mean x: 1764123258.0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,195 | INFO     | mean y: 2750500.709677419
[2025-11-25 23:05:28] 2025-11-26 04:04:24,195 | INFO     | intersect: 7750924965.132775
[2025-11-25 23:05:28] 2025-11-26 04:04:24,196 | INFO     | chi2: 2.7116492761026407
[2025-11-25 23:05:28] 2025-11-26 04:04:24,196 | INFO     | sum of square deviations: 2954447953.0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,197 | INFO     | sum of deviations: 2318867572.499994
[2025-11-25 23:05:28] 2025-11-26 04:04:24,197 | INFO     | mean x: 1764123105.5
[2025-11-25 23:05:28] 2025-11-26 04:04:24,198 | INFO     | mean y: 2761858.287735849
[2025-11-25 23:05:28] 2025-11-26 04:04:24,198 | INFO     | intersect: -1381851419.156565
[2025-11-25 23:05:28] 2025-11-26 04:04:24,198 | INFO     | chi2: 1.9399838531864286
[2025-11-25 23:05:28] 2025-11-26 04:04:24,198 | INFO     | current chi2=1.9399838531864286 (change=28.4574199811452 %)
[2025-11-25 23:05:28] 2025-11-26 04:04:24,199 | INFO     | sum of square deviations: 2750295288.0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,200 | INFO     | sum of deviations: 2411395697.0000067
[2025-11-25 23:05:28] 2025-11-26 04:04:24,200 | INFO     | mean x: 1764122953.0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,200 | INFO     | mean y: 2761927.420289855
[2025-11-25 23:05:28] 2025-11-26 04:04:24,200 | INFO     | intersect: -1543980531.9818168
[2025-11-25 23:05:28] 2025-11-26 04:04:24,200 | INFO     | chi2: 1.9404300794157878
[2025-11-25 23:05:28] 2025-11-26 04:04:24,201 | INFO     | current chi2=1.9404300794157878 (change=-0.023001543472965742 %)
[2025-11-25 23:05:28] 2025-11-26 04:04:24,201 | INFO     | right removable region: 206
[2025-11-25 23:05:28] 2025-11-26 04:04:24,201 | INFO     | sum of square deviations: 2954447953.0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,202 | INFO     | sum of deviations: -54427571469.99999
[2025-11-25 23:05:28] 2025-11-26 04:04:24,202 | INFO     | mean x: 1764123410.5
[2025-11-25 23:05:28] 2025-11-26 04:04:24,202 | INFO     | mean y: 2779112.320754717
[2025-11-25 23:05:28] 2025-11-26 04:04:24,203 | INFO     | intersect: 32501897233.31914
[2025-11-25 23:05:28] 2025-11-26 04:04:24,203 | INFO     | chi2: 1.10691805754976
[2025-11-25 23:05:28] 2025-11-26 04:04:24,203 | INFO     | current chi2=1.10691805754976 (change=59.179158333459156 %)
[2025-11-25 23:05:28] 2025-11-26 04:04:24,203 | INFO     | sum of square deviations: 2750295288.0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,205 | INFO     | sum of deviations: -65837083694.00001
[2025-11-25 23:05:28] 2025-11-26 04:04:24,205 | INFO     | mean x: 1764123563.0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,205 | INFO     | mean y: 2787635.734299517
[2025-11-25 23:05:28] 2025-11-26 04:04:24,205 | INFO     | intersect: 42232707881.22486
[2025-11-25 23:05:28] 2025-11-26 04:04:24,205 | INFO     | chi2: 0.9743099749270079
[2025-11-25 23:05:28] 2025-11-26 04:04:24,205 | INFO     | current chi2=0.9743099749270079 (change=11.979936700670441 %)
[2025-11-25 23:05:28] 2025-11-26 04:04:24,205 | INFO     | left removable region: 20
[2025-11-25 23:05:28] 2025-11-26 04:04:24,206 | INFO     | sum of square deviations: 1995283922.5
[2025-11-25 23:05:28] 2025-11-26 04:04:24,207 | INFO     | sum of deviations: -39812819552.99999
[2025-11-25 23:05:28] 2025-11-26 04:04:24,207 | INFO     | mean x: 1764123532.5
[2025-11-25 23:05:28] 2025-11-26 04:04:24,207 | INFO     | mean y: 2794622.5376344086
[2025-11-25 23:05:28] 2025-11-26 04:04:24,207 | INFO     | intersect: 35203164392.78191
[2025-11-25 23:05:28] 2025-11-26 04:04:24,207 | INFO     | chi2: 0.16408119130869805
[2025-11-25 23:05:28] 2025-11-26 04:04:24,208 | INFO     | current memory leak: -19.95 B/s (using 186 data points, chi2=0.16)
[2025-11-25 23:05:28] 2025-11-26 04:04:24,208 | INFO     | could have reported an average CPU frequency of 2318 MHz (11 samples)
[2025-11-25 23:05:28] 2025-11-26 04:04:24,208 | INFO     | ..............................
[2025-11-25 23:05:28] 2025-11-26 04:04:24,208 | INFO     | . Timing measurements:
[2025-11-25 23:05:28] 2025-11-26 04:04:24,208 | INFO     | . get job = 0 s
[2025-11-25 23:05:28] 2025-11-26 04:04:24,208 | INFO     | . initial setup = 2 s
[2025-11-25 23:05:28] 2025-11-26 04:04:24,208 | INFO     | . payload setup = 8 s
[2025-11-25 23:05:28] 2025-11-26 04:04:24,208 | INFO     | . stage-in = 0 s
[2025-11-25 23:05:28] 2025-11-26 04:04:24,209 | INFO     | . payload execution = 13186 s
[2025-11-25 23:05:28] 2025-11-26 04:04:24,209 | INFO     | . stage-out = 2 s
[2025-11-25 23:05:28] 2025-11-26 04:04:24,209 | INFO     | . log creation = 0 s
[2025-11-25 23:05:28] 2025-11-26 04:04:24,209 | INFO     | ..............................
[2025-11-25 23:05:28] 2025-11-26 04:04:24,290 | INFO     | 
[2025-11-25 23:05:28] 2025-11-26 04:04:24,290 | INFO     | job summary report
[2025-11-25 23:05:28] 2025-11-26 04:04:24,290 | INFO     | --------------------------------------------------
[2025-11-25 23:05:28] 2025-11-26 04:04:24,290 | INFO     | PanDA job id: 6894238229
[2025-11-25 23:05:28] 2025-11-26 04:04:24,290 | INFO     | task id: 47523675
[2025-11-25 23:05:28] 2025-11-26 04:04:24,291 | INFO     | errors: (none)
[2025-11-25 23:05:28] 2025-11-26 04:04:24,291 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:05:28] 2025-11-26 04:04:24,291 | INFO     | pilot state: finished 
[2025-11-25 23:05:28] 2025-11-26 04:04:24,291 | INFO     | transexitcode: 0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,291 | INFO     | exeerrorcode: 0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,291 | INFO     | exeerrordiag: 
[2025-11-25 23:05:28] 2025-11-26 04:04:24,292 | INFO     | exitcode: 0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,292 | INFO     | exitmsg: OK
[2025-11-25 23:05:28] 2025-11-26 04:04:24,292 | INFO     | cpuconsumptiontime: 147924 s
[2025-11-25 23:05:28] 2025-11-26 04:04:24,292 | INFO     | nevents: 400
[2025-11-25 23:05:28] 2025-11-26 04:04:24,292 | INFO     | neventsw: 0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,292 | INFO     | pid: 31931
[2025-11-25 23:05:28] 2025-11-26 04:04:24,293 | INFO     | pgrp: 31931
[2025-11-25 23:05:28] 2025-11-26 04:04:24,293 | INFO     | corecount: 12
[2025-11-25 23:05:28] 2025-11-26 04:04:24,293 | INFO     | event service: False
[2025-11-25 23:05:28] 2025-11-26 04:04:24,293 | INFO     | sizes: {0: 2283944, 5: 2284206, 11: 2284262, 13198: 2314421, 13201: 2323475, 13207: 2323613}
[2025-11-25 23:05:28] 2025-11-26 04:04:24,293 | INFO     | --------------------------------------------------
[2025-11-25 23:05:28] 2025-11-26 04:04:24,293 | INFO     | 
[2025-11-25 23:05:28] 2025-11-26 04:04:24,294 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 23:05:28] 2025-11-26 04:04:24,317 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,318 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,318 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,318 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,318 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,318 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,320 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,320 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,320 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,320 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:05:28] 2025-11-26 04:04:24,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,321 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:05:28] 2025-11-26 04:04:24,321 | INFO     | job 6894238229 has completed (purged errors)
[2025-11-25 23:05:28] 2025-11-26 04:04:24,321 | INFO     | overall cleanup function is called
[2025-11-25 23:05:28] 2025-11-26 04:04:25,329 | INFO     | --- collectZombieJob: --- 10, [31931]
[2025-11-25 23:05:28] 2025-11-26 04:04:25,329 | INFO     | zombie collector waiting for pid 31931
[2025-11-25 23:05:28] 2025-11-26 04:04:25,329 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:05:28] 2025-11-26 04:04:25,330 | INFO     | collected zombie processes
[2025-11-25 23:05:28] 2025-11-26 04:04:25,330 | INFO     | will attempt to kill all subprocesses of pid=31931
[2025-11-25 23:05:28] 2025-11-26 04:04:25,424 | INFO     | process IDs to be killed: [31931] (in reverse order)
[2025-11-25 23:05:28] 2025-11-26 04:04:25,561 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:05:28] 2025-11-26 04:04:25,562 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:05:28] 2025-11-26 04:04:25,565 | INFO     | did not find any defunct processes belonging to 31931
[2025-11-25 23:05:28] 2025-11-26 04:04:25,569 | INFO     | did not find any defunct processes belonging to 31931
[2025-11-25 23:05:28] 2025-11-26 04:04:25,571 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:05:28] 2025-11-26 04:04:25,577 | INFO     | ready for new job
[2025-11-25 23:05:28] 2025-11-26 04:04:25,577 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:05:28] 2025-11-26 04:04:25,578 | INFO     | ***************************************
[2025-11-25 23:05:28] 2025-11-26 04:04:25,579 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:05:28] 2025-11-26 04:04:25,579 | INFO     | ***************************************
[2025-11-25 23:05:28] 2025-11-26 04:04:25,579 | INFO     | 
[2025-11-25 23:05:28] 2025-11-26 04:04:25,579 | INFO     | architecture information:
[2025-11-25 23:05:28] 2025-11-26 04:04:25,580 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:05:28] 2025-11-26 04:04:25,596 | INFO     | cat /etc/os-release:
[2025-11-25 23:05:28] NAME="CentOS Linux"
[2025-11-25 23:05:28] VERSION="7 (Core)"
[2025-11-25 23:05:28] ID="centos"
[2025-11-25 23:05:28] ID_LIKE="rhel fedora"
[2025-11-25 23:05:28] VERSION_ID="7"
[2025-11-25 23:05:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:05:28] ANSI_COLOR="0;31"
[2025-11-25 23:05:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:05:28] HOME_URL="https://www.centos.org/"
[2025-11-25 23:05:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:05:28] 
[2025-11-25 23:05:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:05:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:05:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:05:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:05:28] 
[2025-11-25 23:05:28] 2025-11-26 04:04:25,596 | INFO     | ***************************************
[2025-11-25 23:05:28] 2025-11-26 04:04:26,099 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 23:05:28] 2025-11-26 04:04:26,115 | INFO     | sufficient remaining disk space (29067575296 B)
[2025-11-25 23:05:28] 2025-11-26 04:04:26,116 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:05:28] 2025-11-26 04:04:26,116 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:05:28] 2025-11-26 04:04:26,116 | INFO     | update_server=False
[2025-11-25 23:05:28] 2025-11-26 04:04:26,116 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:05:28] 2025-11-26 04:04:26,116 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:05:28] 2025-11-26 04:04:26,117 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:05:28] 2025-11-26 04:04:26,408 | INFO     | all data control threads have been joined
[2025-11-25 23:05:28] 2025-11-26 04:04:26,510 | INFO     | all payload control threads have been joined
[2025-11-25 23:05:28] 2025-11-26 04:04:26,648 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:05:28] 2025-11-26 04:04:26,648 | INFO     | aborting loop
[2025-11-25 23:05:28] 2025-11-26 04:04:27,117 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:27,122 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:27,214 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:27,409 | INFO     | [data] control thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:27,511 | INFO     | [payload] control thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:27,569 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:27,594 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:27,616 | INFO     | all job control threads have been joined
[2025-11-25 23:05:28] 2025-11-26 04:04:27,654 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:27,788 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:28,123 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:28,196 | INFO     | [job] validate thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:28,271 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:28,617 | INFO     | [job] control thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:28,622 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:05:28] 2025-11-26 04:04:28,641 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:32,628 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:37,113 | INFO     | job.realtimelogging is not enabled
[2025-11-25 23:05:28] 2025-11-26 04:04:38,118 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:05:28] 2025-11-26 04:04:56,447 | INFO     | PID=24525 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 23:05:28] 2025-11-26 04:04:56,448 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:05:28] 2025-11-26 04:04:56,448 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:05:28] 2025-11-26 04:04:56,448 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:05:28] 2025-11-26 04:05:21,342 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:05:28] 2025-11-26 04:05:22,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140645988566848)>', '<ExcThread(monitor, started 140645230417664)>']
[2025-11-25 23:05:28] 2025-11-26 04:05:23,578 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:05:28] 2025-11-26 04:05:23,579 | INFO     | [monitor] control thread has ended
[2025-11-25 23:05:28] 2025-11-26 04:05:27,797 | INFO     | all workflow threads have been joined
[2025-11-25 23:05:28] 2025-11-26 04:05:27,797 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:05:28] 2025-11-26 04:05:27,798 | INFO     | traces error code: 0
[2025-11-25 23:05:28] 2025-11-26 04:05:27,801 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:05:28] 2025-11-26 04:05:27,903 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:05:28] 2025-11-26 04:05:27,907 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:05:28] 2025-11-26 04:05:27,910 [wrapper] pilotpid: 24525
[2025-11-25 23:05:28] 2025-11-26 04:05:27,914 [wrapper] Pilot exit status: 0
[2025-11-25 23:05:28] 2025-11-26 04:05:27,930 [wrapper] pandaids: 6894238229
[2025-11-25 23:05:28] 2025-11-26 04:05:27,977 [wrapper] cleanup supervisor_pilot  3158 24526
[2025-11-25 23:05:28] 2025-11-26 04:05:27,981 [wrapper] Test setup, not cleaning
[2025-11-25 23:05:28] 2025-11-26 04:05:27,986 [wrapper] apfmon messages muted
[2025-11-25 23:05:28] 2025-11-26 04:05:27,990 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:05:28] 2025-11-26 04:05:27,993 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:05:28]  *** Error codes and diagnostics ***
[2025-11-25 23:05:28]     "exeErrorCode": 0,
[2025-11-25 23:05:28]     "exeErrorDiag": "",
[2025-11-25 23:05:28]     "pilotErrorCode": 0,
[2025-11-25 23:05:28]     "pilotErrorDiag": "",
[2025-11-25 23:05:28]  *** Listing of results directory ***
[2025-11-25 23:05:28] total 626624
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 10:13 pilot3.tar.gz
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 10:57 queuedata.json
[2025-11-25 23:05:28] -rwx------ 1 boincer umatlas     36292 Nov 24 10:58 runpilot2-wrapper.sh
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas       100 Nov 25 19:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:05:28] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 19:23 run_atlas
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas       105 Nov 25 19:23 job.xml
[2025-11-25 23:05:28] -rw-r--r-- 2 boincer umatlas 287673146 Nov 25 19:23 EVNT.47523673._000001.pool.root.1
[2025-11-25 23:05:28] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 19:23 start_atlas.sh
[2025-11-25 23:05:28] drwxrwx--x 2 boincer umatlas      4096 Nov 25 19:23 shared
[2025-11-25 23:05:28] -rw-r--r-- 2 boincer umatlas    589933 Nov 25 19:23 input.tar.gz
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas         0 Nov 25 19:23 boinc_lockfile
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas      2610 Nov 25 19:23 pandaJob.out
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas        57 Nov 25 19:23 setup.sh.local
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas    991877 Nov 25 19:23 agis_schedconf.cvmfs.json
[2025-11-25 23:05:28] drwx------ 5 boincer umatlas      4096 Nov 25 19:24 pilot3
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas      5955 Nov 25 23:03 init_data.xml
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas 345402808 Nov 25 23:03 HITS.47523675._000009.pool.root.1
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas       532 Nov 25 23:03 boinc_task_state.xml
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas        95 Nov 25 23:04 pilot_heartbeat.json
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas      1057 Nov 25 23:04 memory_monitor_summary.json
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas   1516240 Nov 25 23:04 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas    504956 Nov 25 23:04 log.47523675._000009.job.log.tgz.1
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas      7852 Nov 25 23:04 heartbeat.json
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 23:05 boinc_mmap_file
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas        29 Nov 25 23:05 wrapper_checkpoint.txt
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas      4818 Nov 25 23:05 pilotlog.txt
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas   1830984 Nov 25 23:05 log.47523675._000009.job.log.1
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas       357 Nov 25 23:05 output.list
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas       620 Nov 25 23:05 runtime_log
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas   2355200 Nov 25 23:05 result.tar.gz
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas      9340 Nov 25 23:05 runtime_log.err
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas       664 Nov 25 23:05 666KDmC8nh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGkLKDmDtCwLm.diag
[2025-11-25 23:05:28] -rw-r--r-- 1 boincer umatlas     21157 Nov 25 23:05 stderr.txt
[2025-11-25 23:05:28] HITS file was successfully produced:
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas 345402808 Nov 25 23:03 shared/HITS.pool.root.1
[2025-11-25 23:05:28]  *** Contents of shared directory: ***
[2025-11-25 23:05:28] total 621140
[2025-11-25 23:05:28] -rw-r--r-- 2 boincer umatlas 287673146 Nov 25 19:23 ATLAS.root_0
[2025-11-25 23:05:28] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 19:23 start_atlas.sh
[2025-11-25 23:05:28] -rw-r--r-- 2 boincer umatlas    589933 Nov 25 19:23 input.tar.gz
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas 345402808 Nov 25 23:03 HITS.pool.root.1
[2025-11-25 23:05:28] -rw------- 1 boincer umatlas   2355200 Nov 25 23:05 result.tar.gz
23:05:29 (20836): run_atlas exited; CPU time 147902.574293
23:05:29 (20836): called boinc_finish(0)

</stderr_txt>
]]>

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