Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:14:10 (28039): wrapper (7.7.26015): starting
07:14:10 (28039): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 07:14:10] Arguments: --nthreads 8
[2025-11-28 07:14:10] Threads: 8
[2025-11-28 07:14:10] Checking for CVMFS
[2025-11-28 07:14:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 07:14:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 07:14:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 07:14:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 07:14:12] 2.11.2.0 27863 287895 136472 153399 2 85 21770844 25165825 1394 130560 9 146324475 99.877 83083463 3680 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 07:14:12] CVMFS is ok
[2025-11-28 07:14:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 07:14:12] Checking for apptainer binary...
[2025-11-28 07:14:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 07:14:12] Running /usr/bin/apptainer --version
[2025-11-28 07:14:12] apptainer version 1.3.2-1.el7
[2025-11-28 07:14:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 07:14:19] cg-vwn495.simple-grid.lan
[2025-11-28 07:14:19] apptainer works
[2025-11-28 07:14:19] Set ATHENA_PROC_NUMBER=8
[2025-11-28 07:14:19] Set ATHENA_CORE_NUMBER=8
[2025-11-28 07:14:19] Starting ATLAS job with PandaID=6896556872
[2025-11-28 07:14:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 04:49:01]  *** The last 200 lines of the pilot log: ***
[2025-11-29 04:49:01] 2025-11-29 03:47:41,306 | INFO     | time since job start (77344s) is within the limit (172800.0s)
[2025-11-29 04:49:01] 2025-11-29 03:47:41,621 | INFO     | monitor loop #5261: job 0:6896556872 is in state 'finished'
[2025-11-29 04:49:01] 2025-11-29 03:47:41,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:49:01] 2025-11-29 03:47:43,315 | INFO     | time since job start (77346s) is within the limit (172800.0s)
[2025-11-29 04:49:01] 2025-11-29 03:47:44,130 | INFO     | monitor loop #5262: job 0:6896556872 is in state 'finished'
[2025-11-29 04:49:01] 2025-11-29 03:47:44,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:49:01] 2025-11-29 03:47:45,322 | INFO     | time since job start (77348s) is within the limit (172800.0s)
[2025-11-29 04:49:01] 2025-11-29 03:47:46,635 | INFO     | monitor loop #5263: job 0:6896556872 is in state 'finished'
[2025-11-29 04:49:01] 2025-11-29 03:47:46,636 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:49:01] 2025-11-29 03:47:47,331 | INFO     | time since job start (77350s) is within the limit (172800.0s)
[2025-11-29 04:49:01] 2025-11-29 03:47:48,461 | INFO     | PID=31820 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 04:49:01] 2025-11-29 03:47:48,461 | INFO     | .. there are 9 such processes running
[2025-11-29 04:49:01] 2025-11-29 03:47:49,141 | INFO     | monitor loop #5264: job 0:6896556872 is in state 'finished'
[2025-11-29 04:49:01] 2025-11-29 03:47:49,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:49:01] 2025-11-29 03:47:49,467 | INFO     | time since job start (77352s) is within the limit (172800.0s)
[2025-11-29 04:49:01] 2025-11-29 03:47:51,282 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 04:49:01] 2025-11-29 03:47:51,283 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-29 04:49:01] 2025-11-29 03:47:51,284 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6896556872/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 04:49:01] 2025-11-29 03:47:51,285 | INFO     | extracted standard info from prmon json
[2025-11-29 04:49:01] 2025-11-29 03:47:51,285 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 04:49:01] 2025-11-29 03:47:51,285 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 04:49:01] 2025-11-29 03:47:51,319 | INFO     | fitting pss+swap vs Time
[2025-11-29 04:49:01] 2025-11-29 03:47:51,324 | INFO     | sum of square deviations: 618806394184.5969
[2025-11-29 04:49:01] 2025-11-29 03:47:51,404 | INFO     | sum of deviations: 2217134285616.546
[2025-11-29 04:49:01] 2025-11-29 03:47:51,404 | INFO     | mean x: 1764349577.0436854
[2025-11-29 04:49:01] 2025-11-29 03:47:51,405 | INFO     | mean y: 2835824.208101668
[2025-11-29 04:49:01] 2025-11-29 03:47:51,405 | INFO     | intersect: -6318688930.285099
[2025-11-29 04:49:01] 2025-11-29 03:47:51,406 | INFO     | chi2: 24.323192131368245
[2025-11-29 04:49:01] 2025-11-29 03:47:51,408 | INFO     | sum of square deviations: 611463429356.6289
[2025-11-29 04:49:01] 2025-11-29 03:47:51,450 | INFO     | sum of deviations: 2634347892152.284
[2025-11-29 04:49:01] 2025-11-29 03:47:51,450 | INFO     | mean x: 1764349424.5478468
[2025-11-29 04:49:01] 2025-11-29 03:47:51,450 | INFO     | mean y: 2844487.937001595
[2025-11-29 04:49:01] 2025-11-29 03:47:51,450 | INFO     | intersect: -7598444427.195937
[2025-11-29 04:49:01] 2025-11-29 03:47:51,452 | INFO     | chi2: 21.0633122017296
[2025-11-29 04:49:01] 2025-11-29 03:47:51,452 | INFO     | current chi2=21.0633122017296 (change=13.402352421640252 %)
[2025-11-29 04:49:01] 2025-11-29 03:47:51,452 | INFO     | right removable region: 1253
[2025-11-29 04:49:01] 2025-11-29 03:47:51,454 | INFO     | sum of square deviations: 611462627816.6287
[2025-11-29 04:49:01] 2025-11-29 03:47:51,496 | INFO     | time since job start (77354s) is within the limit (172800.0s)
[2025-11-29 04:49:01] 2025-11-29 03:47:51,501 | INFO     | sum of deviations: 1688932255303.0342
[2025-11-29 04:49:01] 2025-11-29 03:47:51,501 | INFO     | mean x: 1764349729.5478468
[2025-11-29 04:49:01] 2025-11-29 03:47:51,501 | INFO     | mean y: 2846792.3827751195
[2025-11-29 04:49:01] 2025-11-29 03:47:51,501 | INFO     | intersect: -4870496290.756845
[2025-11-29 04:49:01] 2025-11-29 03:47:51,503 | INFO     | chi2: 19.593861196675398
[2025-11-29 04:49:01] 2025-11-29 03:47:51,503 | INFO     | current chi2=19.593861196675398 (change=19.443709975031183 %)
[2025-11-29 04:49:01] 2025-11-29 03:47:51,503 | INFO     | left removable region: 10
[2025-11-29 04:49:01] 2025-11-29 03:47:51,504 | INFO     | sum of square deviations: 595512286102.9452
[2025-11-29 04:49:01] 2025-11-29 03:47:51,545 | INFO     | sum of deviations: 1734404306163.8298
[2025-11-29 04:49:01] 2025-11-29 03:47:51,545 | INFO     | mean x: 1764349699.0571198
[2025-11-29 04:49:01] 2025-11-29 03:47:51,545 | INFO     | mean y: 2867197.7771520517
[2025-11-29 04:49:01] 2025-11-29 03:47:51,546 | INFO     | intersect: -5135726559.286883
[2025-11-29 04:49:01] 2025-11-29 03:47:51,547 | INFO     | chi2: 12.019059194832574
[2025-11-29 04:49:01] 2025-11-29 03:47:51,547 | INFO     | current memory leak: 2.91 B/s (using 1243 data points, chi2=12.02)
[2025-11-29 04:49:01] 2025-11-29 03:47:51,548 | INFO     | could have reported an average CPU frequency of 2249 MHz (43 samples)
[2025-11-29 04:49:01] 2025-11-29 03:47:51,548 | INFO     | ..............................
[2025-11-29 04:49:01] 2025-11-29 03:47:51,549 | INFO     | . Timing measurements:
[2025-11-29 04:49:01] 2025-11-29 03:47:51,549 | INFO     | . get job = 0 s
[2025-11-29 04:49:01] 2025-11-29 03:47:51,549 | INFO     | . initial setup = 5 s
[2025-11-29 04:49:01] 2025-11-29 03:47:51,549 | INFO     | . payload setup = 153 s
[2025-11-29 04:49:01] 2025-11-29 03:47:51,549 | INFO     | . stage-in = 0 s
[2025-11-29 04:49:01] 2025-11-29 03:47:51,549 | INFO     | . payload execution = 76916 s
[2025-11-29 04:49:01] 2025-11-29 03:47:51,549 | INFO     | . stage-out = 14 s
[2025-11-29 04:49:01] 2025-11-29 03:47:51,549 | INFO     | . log creation = 2 s
[2025-11-29 04:49:01] 2025-11-29 03:47:51,549 | INFO     | ..............................
[2025-11-29 04:49:01] 2025-11-29 03:47:51,880 | INFO     | 
[2025-11-29 04:49:01] 2025-11-29 03:47:51,881 | INFO     | job summary report
[2025-11-29 04:49:01] 2025-11-29 03:47:51,881 | INFO     | --------------------------------------------------
[2025-11-29 04:49:01] 2025-11-29 03:47:51,881 | INFO     | PanDA job id: 6896556872
[2025-11-29 04:49:01] 2025-11-29 03:47:51,881 | INFO     | task id: 47556161
[2025-11-29 04:49:01] 2025-11-29 03:47:51,881 | INFO     | errors: (none)
[2025-11-29 04:49:01] 2025-11-29 03:47:51,881 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 04:49:01] 2025-11-29 03:47:51,881 | INFO     | pilot state: finished 
[2025-11-29 04:49:01] 2025-11-29 03:47:51,881 | INFO     | transexitcode: 0
[2025-11-29 04:49:01] 2025-11-29 03:47:51,881 | INFO     | exeerrorcode: 0
[2025-11-29 04:49:01] 2025-11-29 03:47:51,881 | INFO     | exeerrordiag: 
[2025-11-29 04:49:01] 2025-11-29 03:47:51,882 | INFO     | exitcode: 0
[2025-11-29 04:49:01] 2025-11-29 03:47:51,882 | INFO     | exitmsg: OK
[2025-11-29 04:49:01] 2025-11-29 03:47:51,882 | INFO     | cpuconsumptiontime: 285296 s
[2025-11-29 04:49:01] 2025-11-29 03:47:51,882 | INFO     | nevents: 1000
[2025-11-29 04:49:01] 2025-11-29 03:47:51,882 | INFO     | neventsw: 0
[2025-11-29 04:49:01] 2025-11-29 03:47:51,882 | INFO     | pid: 6040
[2025-11-29 04:49:01] 2025-11-29 03:47:51,882 | INFO     | pgrp: 6040
[2025-11-29 04:49:01] 2025-11-29 03:47:51,882 | INFO     | corecount: 8
[2025-11-29 04:49:01] 2025-11-29 03:47:51,882 | INFO     | event service: False
[2025-11-29 04:49:01] 2025-11-29 03:47:51,882 | INFO     | sizes: {0: 2284041, 1: 2284240, 12: 2284240, 23: 2284268, 33: 2284296, 44: 2284352, 55: 2284508, 65: 2284536, 76: 2284564, 87: 2284620, 92: 2284910, 97: 2285218, 7
[2025-11-29 04:49:01] 2025-11-29 03:47:51,882 | INFO     | --------------------------------------------------
[2025-11-29 04:49:01] 2025-11-29 03:47:51,883 | INFO     | 
[2025-11-29 04:49:01] 2025-11-29 03:47:51,883 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-29 04:49:01] 2025-11-29 03:47:52,662 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,662 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,662 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,663 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,664 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 04:49:01] 2025-11-29 03:47:52,664 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,664 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 04:49:01] 2025-11-29 03:47:52,664 | INFO     | job 6896556872 has completed (purged errors)
[2025-11-29 04:49:01] 2025-11-29 03:47:52,664 | INFO     | overall cleanup function is called
[2025-11-29 04:49:01] 2025-11-29 03:47:53,678 | INFO     | --- collectZombieJob: --- 10, [6040]
[2025-11-29 04:49:01] 2025-11-29 03:47:53,679 | INFO     | zombie collector waiting for pid 6040
[2025-11-29 04:49:01] 2025-11-29 03:47:53,679 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 04:49:01] 2025-11-29 03:47:53,679 | INFO     | collected zombie processes
[2025-11-29 04:49:01] 2025-11-29 03:47:53,679 | INFO     | will attempt to kill all subprocesses of pid=6040
[2025-11-29 04:49:01] 2025-11-29 03:47:53,774 | INFO     | process IDs to be killed: [6040] (in reverse order)
[2025-11-29 04:49:01] 2025-11-29 03:47:54,355 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 04:49:01] 2025-11-29 03:47:54,355 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 04:49:01] 2025-11-29 03:47:54,358 | INFO     | did not find any defunct processes belonging to 6040
[2025-11-29 04:49:01] 2025-11-29 03:47:54,360 | INFO     | did not find any defunct processes belonging to 6040
[2025-11-29 04:49:01] 2025-11-29 03:47:54,395 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 04:49:01] 2025-11-29 03:47:54,395 | INFO     | ready for new job
[2025-11-29 04:49:01] 2025-11-29 03:47:54,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 04:49:01] 2025-11-29 03:47:54,399 | INFO     | ***************************************
[2025-11-29 04:49:01] 2025-11-29 03:47:54,400 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 04:49:01] 2025-11-29 03:47:54,400 | INFO     | ***************************************
[2025-11-29 04:49:01] 2025-11-29 03:47:54,400 | INFO     | 
[2025-11-29 04:49:01] 2025-11-29 03:47:54,400 | INFO     | pilot is running in a VM
[2025-11-29 04:49:01] 2025-11-29 03:47:54,400 | INFO     | architecture information:
[2025-11-29 04:49:01] 2025-11-29 03:47:54,406 | INFO     | executing command: cat /etc/os-release
[2025-11-29 04:49:01] 2025-11-29 03:47:54,682 | INFO     | cat /etc/os-release:
[2025-11-29 04:49:01] NAME="CentOS Linux"
[2025-11-29 04:49:01] VERSION="7 (Core)"
[2025-11-29 04:49:01] ID="centos"
[2025-11-29 04:49:01] ID_LIKE="rhel fedora"
[2025-11-29 04:49:01] VERSION_ID="7"
[2025-11-29 04:49:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 04:49:01] ANSI_COLOR="0;31"
[2025-11-29 04:49:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 04:49:01] HOME_URL="https://www.centos.org/"
[2025-11-29 04:49:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 04:49:01] 
[2025-11-29 04:49:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 04:49:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 04:49:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 04:49:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 04:49:01] 
[2025-11-29 04:49:01] 2025-11-29 03:47:54,682 | INFO     | ***************************************
[2025-11-29 04:49:01] 2025-11-29 03:47:55,186 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-29 04:49:01] 2025-11-29 03:47:55,397 | INFO     | sufficient remaining disk space (493338230784 B)
[2025-11-29 04:49:01] 2025-11-29 03:47:55,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 04:49:01] 2025-11-29 03:47:55,397 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 04:49:01] 2025-11-29 03:47:55,398 | INFO     | update_server=False
[2025-11-29 04:49:01] 2025-11-29 03:47:55,398 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 04:49:01] 2025-11-29 03:47:55,398 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 04:49:01] 2025-11-29 03:47:55,399 | INFO     | aborting loop
[2025-11-29 04:49:01] 2025-11-29 03:47:56,150 | INFO     | all data control threads have been joined
[2025-11-29 04:49:01] 2025-11-29 03:47:56,192 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 04:49:01] 2025-11-29 03:47:56,404 | INFO     | [job] retrieve thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:56,405 | INFO     | [job] job monitor thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:56,431 | INFO     | all payload control threads have been joined
[2025-11-29 04:49:01] 2025-11-29 03:47:56,547 | INFO     | all job control threads have been joined
[2025-11-29 04:49:01] 2025-11-29 03:47:56,672 | INFO     | [job] validate thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:56,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 04:49:01] 2025-11-29 03:47:56,712 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 04:49:01] 2025-11-29 03:47:56,789 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:56,801 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:56,850 | INFO     | [payload] failed_post thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:57,157 | INFO     | [data] control thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:57,270 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:57,330 | INFO     | [data] copytool_in thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:57,438 | INFO     | [payload] control thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:57,540 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:57,553 | INFO     | [job] control thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:57,688 | INFO     | [job] queue monitor thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:57,955 | INFO     | [payload] validate_post thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:47:58,199 | INFO     | [data] copytool_out thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:48:00,721 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 04:49:01] 2025-11-29 03:48:24,670 | INFO     | PID=31820 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 04:49:01] 2025-11-29 03:48:24,670 | INFO     | .. there are 9 such processes running
[2025-11-29 04:49:01] 2025-11-29 03:48:24,671 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 04:49:01] 2025-11-29 03:48:24,671 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 04:49:01] 2025-11-29 03:48:24,671 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 04:49:01] 2025-11-29 03:48:51,972 | INFO     | [monitor] cgroup control has ended
[2025-11-29 04:49:01] 2025-11-29 03:48:52,280 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140229083109184)>', '<ExcThread(monitor, started 140228635375360)>']
[2025-11-29 04:49:01] 2025-11-29 03:48:52,833 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 04:49:01] 2025-11-29 03:48:52,834 | INFO     | [monitor] control thread has ended
[2025-11-29 04:49:01] 2025-11-29 03:48:57,305 | INFO     | all workflow threads have been joined
[2025-11-29 04:49:01] 2025-11-29 03:48:57,306 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 04:49:01] 2025-11-29 03:48:57,306 | INFO     | traces error code: 0
[2025-11-29 04:49:01] 2025-11-29 03:48:57,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 04:49:01] 2025-11-29 03:48:57,569 [wrapper] ==== pilot stdout END ====
[2025-11-29 04:49:01] 2025-11-29 03:48:57,597 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 04:49:01] 2025-11-29 03:48:57,645 [wrapper] pilotpid: 31820
[2025-11-29 04:49:01] 2025-11-29 03:48:57,679 [wrapper] Pilot exit status: 0
[2025-11-29 04:49:01] 2025-11-29 03:48:58,017 [wrapper] pandaids: 6896556872
[2025-11-29 04:49:01] 2025-11-29 03:48:58,972 [wrapper] cleanup supervisor_pilot  2213 31821
[2025-11-29 04:49:01] 2025-11-29 03:48:59,061 [wrapper] Test setup, not cleaning
[2025-11-29 04:49:01] 2025-11-29 03:48:59,146 [wrapper] apfmon messages muted
[2025-11-29 04:49:01] 2025-11-29 03:48:59,265 [wrapper] ==== wrapper stdout END ====
[2025-11-29 04:49:01] 2025-11-29 03:48:59,371 [wrapper] ==== wrapper stderr END ====
[2025-11-29 04:49:01]  *** Error codes and diagnostics ***
[2025-11-29 04:49:01]     "exeErrorCode": 0,
[2025-11-29 04:49:01]     "exeErrorDiag": "",
[2025-11-29 04:49:01]     "pilotErrorCode": 0,
[2025-11-29 04:49:01]     "pilotErrorDiag": "",
[2025-11-29 04:49:01]  *** Listing of results directory ***
[2025-11-29 04:49:01] total 1328264
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc    576529 Nov 25 05:09 pilot3.tar.gz
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc      5112 Nov 25 05:38 queuedata.json
[2025-11-29 04:49:01] -rwx------. 1 boinc boinc     36292 Nov 25 05:38 runpilot2-wrapper.sh
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc       100 Nov 28 07:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 04:49:01] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 07:14 run_atlas
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc       105 Nov 28 07:14 job.xml
[2025-11-29 04:49:01] -rw-r--r--. 2 boinc boinc 408663785 Nov 28 07:14 EVNT.47483658._002083.pool.root.1
[2025-11-29 04:49:01] -rw-r--r--. 2 boinc boinc     15847 Nov 28 07:14 start_atlas.sh
[2025-11-29 04:49:01] drwxrwx--x. 2 boinc boinc        68 Nov 28 07:14 shared
[2025-11-29 04:49:01] -rw-r--r--. 2 boinc boinc    590107 Nov 28 07:14 input.tar.gz
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc      6392 Nov 28 07:14 init_data.xml
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc         0 Nov 28 07:14 boinc_lockfile
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc      2783 Nov 28 07:14 pandaJob.out
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc    991866 Nov 28 07:18 agis_schedconf.cvmfs.json
[2025-11-29 04:49:01] drwx------. 5 boinc boinc      4096 Nov 28 07:18 pilot3
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc       533 Nov 29 04:20 boinc_task_state.xml
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc 922097424 Nov 29 04:44 HITS.47556161._000665.pool.root.1
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc      1032 Nov 29 04:46 memory_monitor_summary.json
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc   1516240 Nov 29 04:46 agis_ddmendpoints.agis.ALL.json
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc   2376847 Nov 29 04:46 log.47556161._000665.job.log.tgz.1
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc      8638 Nov 29 04:47 heartbeat.json
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc        95 Nov 29 04:48 pilot_heartbeat.json
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc        29 Nov 29 04:48 wrapper_checkpoint.txt
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc      8192 Nov 29 04:48 boinc_mmap_file
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc      4885 Nov 29 04:48 pilotlog.txt
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc  10360957 Nov 29 04:48 log.47556161._000665.job.log.1
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc       353 Nov 29 04:49 output.list
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc       620 Nov 29 04:49 runtime_log
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc  12759040 Nov 29 04:49 result.tar.gz
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc      8833 Nov 29 04:49 runtime_log.err
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc       662 Nov 29 04:49 4gMLDmlzzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmu7LKDmVG7Fkn.diag
[2025-11-29 04:49:01] -rw-r--r--. 1 boinc boinc     21500 Nov 29 04:49 stderr.txt
[2025-11-29 04:49:01] HITS file was successfully produced:
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc 922097424 Nov 29 04:44 shared/HITS.pool.root.1
[2025-11-29 04:49:01]  *** Contents of shared directory: ***
[2025-11-29 04:49:01] total 1312632
[2025-11-29 04:49:01] -rw-r--r--. 2 boinc boinc 408663785 Nov 28 07:14 ATLAS.root_0
[2025-11-29 04:49:01] -rw-r--r--. 2 boinc boinc     15847 Nov 28 07:14 start_atlas.sh
[2025-11-29 04:49:01] -rw-r--r--. 2 boinc boinc    590107 Nov 28 07:14 input.tar.gz
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc 922097424 Nov 29 04:44 HITS.pool.root.1
[2025-11-29 04:49:01] -rw-------. 1 boinc boinc  12759040 Nov 29 04:49 result.tar.gz
04:49:03 (28039): run_atlas exited; CPU time 285725.548559
04:49:03 (28039): called boinc_finish(0)

</stderr_txt>
]]>

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