Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:00:26 (715702): wrapper (7.7.26015): starting
20:00:26 (715702): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 20:00:26] Arguments: --nthreads 9
[2025-11-25 20:00:26] Threads: 9
[2025-11-25 20:00:26] Checking for CVMFS
[2025-11-25 20:00:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:00:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:00:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:00:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:00:27] 2.13.3.0 13693 29360 357156 153303 1 587 25340532 40960000 23366 16776704 0 81791585 99.605 87298068 37222 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 20:00:27] CVMFS is ok
[2025-11-25 20:00:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:00:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:00:27] Further information can be found at the LHC@home message board.
[2025-11-25 20:00:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:00:27] Checking for apptainer binary...
[2025-11-25 20:00:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:00:27] Running /usr/bin/apptainer --version
[2025-11-25 20:00:27] apptainer version 1.4.4-1.el9
[2025-11-25 20:00:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:00:28] c6-5-37-3.aglt2.org
[2025-11-25 20:00:28] apptainer works
[2025-11-25 20:00:28] Set ATHENA_PROC_NUMBER=9
[2025-11-25 20:00:28] Set ATHENA_CORE_NUMBER=9
[2025-11-25 20:00:28] Starting ATLAS job with PandaID=6896450998
[2025-11-25 20:00:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:49:37]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:49:37] 2025-11-26 13:48:45,831 | INFO     | time since job start (46055s) is within the limit (172800.0s)
[2025-11-26 08:49:37] 2025-11-26 13:48:45,838 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 08:49:37] 2025-11-26 13:48:45,864 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2913.190857142857
[2025-11-26 08:49:37] 2025-11-26 13:48:45,873 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896450998/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:49:37] 2025-11-26 13:48:45,873 | INFO     | extracted standard info from prmon json
[2025-11-26 08:49:37] 2025-11-26 13:48:45,873 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:49:37] 2025-11-26 13:48:45,873 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:49:37] 2025-11-26 13:48:45,903 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:49:37] 2025-11-26 13:48:45,910 | INFO     | sum of square deviations: 132393354231.18205
[2025-11-26 08:49:37] 2025-11-26 13:48:45,923 | INFO     | sum of deviations: 1228600694467.5393
[2025-11-26 08:49:37] 2025-11-26 13:48:45,926 | INFO     | mean x: 1764141907.2841966
[2025-11-26 08:49:37] 2025-11-26 13:48:45,926 | INFO     | mean y: 3039989.2217795486
[2025-11-26 08:49:37] 2025-11-26 13:48:45,926 | INFO     | intersect: -16368068553.310854
[2025-11-26 08:49:37] 2025-11-26 13:48:45,927 | INFO     | chi2: 6.758757639655643
[2025-11-26 08:49:37] 2025-11-26 13:48:45,929 | INFO     | sum of square deviations: 129773777361.46542
[2025-11-26 08:49:37] 2025-11-26 13:48:45,940 | INFO     | sum of deviations: 1487650340490.556
[2025-11-26 08:49:37] 2025-11-26 13:48:45,941 | INFO     | mean x: 1764141754.7914438
[2025-11-26 08:49:37] 2025-11-26 13:48:45,941 | INFO     | mean y: 3055072.586898396
[2025-11-26 08:49:37] 2025-11-26 13:48:45,941 | INFO     | intersect: -20220029556.28348
[2025-11-26 08:49:37] 2025-11-26 13:48:45,942 | INFO     | chi2: 3.804610881346114
[2025-11-26 08:49:37] 2025-11-26 13:48:45,942 | INFO     | current chi2=3.804610881346114 (change=43.708428616772274 %)
[2025-11-26 08:49:37] 2025-11-26 13:48:45,943 | INFO     | sum of square deviations: 127189037468.07077
[2025-11-26 08:49:37] 2025-11-26 13:48:45,952 | INFO     | sum of deviations: 1590107078820.9465
[2025-11-26 08:49:37] 2025-11-26 13:48:45,952 | INFO     | mean x: 1764141602.3001347
[2025-11-26 08:49:37] 2025-11-26 13:48:45,952 | INFO     | mean y: 3061109.524899058
[2025-11-26 08:49:37] 2025-11-26 13:48:45,952 | INFO     | intersect: -22052094788.35801
[2025-11-26 08:49:37] 2025-11-26 13:48:45,953 | INFO     | chi2: 3.151262946879861
[2025-11-26 08:49:37] 2025-11-26 13:48:45,953 | INFO     | current chi2=3.151262946879861 (change=17.172529723593996 %)
[2025-11-26 08:49:37] 2025-11-26 13:48:45,953 | INFO     | right removable region: 742
[2025-11-26 08:49:37] 2025-11-26 13:48:45,954 | INFO     | sum of square deviations: 129773279113.4655
[2025-11-26 08:49:37] 2025-11-26 13:48:45,968 | INFO     | sum of deviations: 962859528819.9137
[2025-11-26 08:49:37] 2025-11-26 13:48:45,968 | INFO     | mean x: 1764142059.7914438
[2025-11-26 08:49:37] 2025-11-26 13:48:45,968 | INFO     | mean y: 3055444.7366310162
[2025-11-26 08:49:37] 2025-11-26 13:48:45,968 | INFO     | intersect: -13086087436.341496
[2025-11-26 08:49:37] 2025-11-26 13:48:45,969 | INFO     | chi2: 3.8265307420947465
[2025-11-26 08:49:37] 2025-11-26 13:48:45,970 | INFO     | current chi2=3.8265307420947465 (change=43.3841107181688 %)
[2025-11-26 08:49:37] 2025-11-26 13:48:45,971 | INFO     | sum of square deviations: 127188269849.20552
[2025-11-26 08:49:37] 2025-11-26 13:48:45,987 | INFO     | monitor loop #2969: job 0:6896450998 is in state 'finished'
[2025-11-26 08:49:37] 2025-11-26 13:48:45,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:49:37] 2025-11-26 13:48:45,995 | INFO     | sum of deviations: 905641780523.573
[2025-11-26 08:49:37] 2025-11-26 13:48:45,995 | INFO     | mean x: 1764142212.2907133
[2025-11-26 08:49:37] 2025-11-26 13:48:45,995 | INFO     | mean y: 3058818.8075370123
[2025-11-26 08:49:37] 2025-11-26 13:48:45,995 | INFO     | intersect: -12558483972.284502
[2025-11-26 08:49:37] 2025-11-26 13:48:45,996 | INFO     | chi2: 3.7675733097958832
[2025-11-26 08:49:37] 2025-11-26 13:48:45,996 | INFO     | current chi2=3.7675733097958832 (change=1.5407541784595307 %)
[2025-11-26 08:49:37] 2025-11-26 13:48:45,996 | INFO     | left removable region: 20
[2025-11-26 08:49:37] 2025-11-26 13:48:45,997 | INFO     | sum of square deviations: 116706438308.23962
[2025-11-26 08:49:37] 2025-11-26 13:48:46,006 | INFO     | sum of deviations: 1173106581057.486
[2025-11-26 08:49:37] 2025-11-26 13:48:46,006 | INFO     | mean x: 1764142181.8074791
[2025-11-26 08:49:37] 2025-11-26 13:48:46,007 | INFO     | mean y: 3086160.168975069
[2025-11-26 08:49:37] 2025-11-26 13:48:46,007 | INFO     | intersect: -17729669919.093147
[2025-11-26 08:49:37] 2025-11-26 13:48:46,007 | INFO     | chi2: 0.07514326471232682
[2025-11-26 08:49:37] 2025-11-26 13:48:46,008 | INFO     | current memory leak: 10.05 B/s (using 722 data points, chi2=0.08)
[2025-11-26 08:49:37] 2025-11-26 13:48:46,009 | INFO     | could have reported an average CPU frequency of 2999 MHz (29 samples)
[2025-11-26 08:49:37] 2025-11-26 13:48:46,009 | INFO     | ..............................
[2025-11-26 08:49:37] 2025-11-26 13:48:46,009 | INFO     | . Timing measurements:
[2025-11-26 08:49:37] 2025-11-26 13:48:46,009 | INFO     | . get job = 0 s
[2025-11-26 08:49:37] 2025-11-26 13:48:46,009 | INFO     | . initial setup = 4 s
[2025-11-26 08:49:37] 2025-11-26 13:48:46,009 | INFO     | . payload setup = 22 s
[2025-11-26 08:49:37] 2025-11-26 13:48:46,009 | INFO     | . stage-in = 0 s
[2025-11-26 08:49:37] 2025-11-26 13:48:46,009 | INFO     | . payload execution = 45946 s
[2025-11-26 08:49:37] 2025-11-26 13:48:46,009 | INFO     | . stage-out = 4 s
[2025-11-26 08:49:37] 2025-11-26 13:48:46,009 | INFO     | . log creation = 1 s
[2025-11-26 08:49:37] 2025-11-26 13:48:46,009 | INFO     | ..............................
[2025-11-26 08:49:37] 2025-11-26 13:48:46,089 | INFO     | 
[2025-11-26 08:49:37] 2025-11-26 13:48:46,089 | INFO     | job summary report
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | --------------------------------------------------
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | PanDA job id: 6896450998
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | task id: 47556149
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | errors: (none)
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | pilot state: finished 
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | transexitcode: 0
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | exeerrorcode: 0
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | exeerrordiag: 
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | exitcode: 0
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | exitmsg: OK
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | cpuconsumptiontime: 230331 s
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | nevents: 1000
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | neventsw: 0
[2025-11-26 08:49:37] 2025-11-26 13:48:46,090 | INFO     | pid: 727071
[2025-11-26 08:49:37] 2025-11-26 13:48:46,091 | INFO     | pgrp: 727071
[2025-11-26 08:49:37] 2025-11-26 13:48:46,091 | INFO     | corecount: 9
[2025-11-26 08:49:37] 2025-11-26 13:48:46,091 | INFO     | event service: False
[2025-11-26 08:49:37] 2025-11-26 13:48:46,091 | INFO     | sizes: {0: 2284088, 1: 2284343, 2: 2284343, 13: 2284371, 24: 2284717, 34: 2284717, 45973: 2332406, 45978: 2341456, 45999: 2341646}
[2025-11-26 08:49:37] 2025-11-26 13:48:46,091 | INFO     | --------------------------------------------------
[2025-11-26 08:49:37] 2025-11-26 13:48:46,091 | INFO     | 
[2025-11-26 08:49:37] 2025-11-26 13:48:46,092 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 08:49:37] 2025-11-26 13:48:46,112 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,113 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,113 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,113 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,113 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,113 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,113 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,113 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,113 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,113 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,113 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,113 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,114 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,114 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,114 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,114 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,114 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,114 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:49:37] 2025-11-26 13:48:46,114 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,114 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:49:37] 2025-11-26 13:48:46,114 | INFO     | job 6896450998 has completed (purged errors)
[2025-11-26 08:49:37] 2025-11-26 13:48:46,114 | INFO     | overall cleanup function is called
[2025-11-26 08:49:37] 2025-11-26 13:48:47,130 | INFO     | --- collectZombieJob: --- 10, [727071]
[2025-11-26 08:49:37] 2025-11-26 13:48:47,130 | INFO     | zombie collector waiting for pid 727071
[2025-11-26 08:49:37] 2025-11-26 13:48:47,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:49:37] 2025-11-26 13:48:47,131 | INFO     | collected zombie processes
[2025-11-26 08:49:37] 2025-11-26 13:48:47,131 | INFO     | will attempt to kill all subprocesses of pid=727071
[2025-11-26 08:49:37] 2025-11-26 13:48:47,682 | INFO     | process IDs to be killed: [727071] (in reverse order)
[2025-11-26 08:49:37] 2025-11-26 13:48:48,370 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:49:37] 2025-11-26 13:48:48,370 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:49:37] 2025-11-26 13:48:48,410 | INFO     | did not find any defunct processes belonging to 727071
[2025-11-26 08:49:37] 2025-11-26 13:48:48,429 | INFO     | did not find any defunct processes belonging to 727071
[2025-11-26 08:49:37] 2025-11-26 13:48:48,431 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:49:37] 2025-11-26 13:48:48,431 | INFO     | ready for new job
[2025-11-26 08:49:37] 2025-11-26 13:48:48,431 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:49:37] 2025-11-26 13:48:48,436 | INFO     | ***************************************
[2025-11-26 08:49:37] 2025-11-26 13:48:48,436 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:49:37] 2025-11-26 13:48:48,437 | INFO     | ***************************************
[2025-11-26 08:49:37] 2025-11-26 13:48:48,437 | INFO     | 
[2025-11-26 08:49:37] 2025-11-26 13:48:48,441 | INFO     | architecture information:
[2025-11-26 08:49:37] 2025-11-26 13:48:48,441 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:49:37] 2025-11-26 13:48:48,468 | INFO     | cat /etc/os-release:
[2025-11-26 08:49:37] NAME="CentOS Linux"
[2025-11-26 08:49:37] VERSION="7 (Core)"
[2025-11-26 08:49:37] ID="centos"
[2025-11-26 08:49:37] ID_LIKE="rhel fedora"
[2025-11-26 08:49:37] VERSION_ID="7"
[2025-11-26 08:49:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:49:37] ANSI_COLOR="0;31"
[2025-11-26 08:49:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:49:37] HOME_URL="https://www.centos.org/"
[2025-11-26 08:49:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:49:37] 
[2025-11-26 08:49:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:49:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:49:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:49:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:49:37] 
[2025-11-26 08:49:37] 2025-11-26 13:48:48,468 | INFO     | ***************************************
[2025-11-26 08:49:37] 2025-11-26 13:48:48,972 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 08:49:37] 2025-11-26 13:48:49,034 | INFO     | sufficient remaining disk space (68813848576 B)
[2025-11-26 08:49:37] 2025-11-26 13:48:49,034 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:49:37] 2025-11-26 13:48:49,034 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:49:37] 2025-11-26 13:48:49,034 | INFO     | update_server=False
[2025-11-26 08:49:37] 2025-11-26 13:48:49,034 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:49:37] 2025-11-26 13:48:49,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:49:37] 2025-11-26 13:48:49,323 | INFO     | all data control threads have been joined
[2025-11-26 08:49:37] 2025-11-26 13:48:49,504 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:49:37] 2025-11-26 13:48:49,505 | INFO     | aborting loop
[2025-11-26 08:49:37] 2025-11-26 13:48:49,916 | INFO     | all payload control threads have been joined
[2025-11-26 08:49:37] 2025-11-26 13:48:50,040 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:50,084 | INFO     | all job control threads have been joined
[2025-11-26 08:49:37] 2025-11-26 13:48:50,197 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:50,235 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:50,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:49:37] 2025-11-26 13:48:50,308 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:50,329 | INFO     | [data] control thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:50,429 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:50,510 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:50,696 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:50,876 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:50,922 | INFO     | [payload] control thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:51,090 | INFO     | [job] control thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:51,112 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:49:37] 2025-11-26 13:48:51,335 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:51,506 | INFO     | [job] validate thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:52,118 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:52,247 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:48:53,254 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:49:37] 2025-11-26 13:49:19,507 | INFO     | PID=719894 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 08:49:37] 2025-11-26 13:49:19,508 | INFO     | .. there are 31 such processes running
[2025-11-26 08:49:37] 2025-11-26 13:49:19,508 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:49:37] 2025-11-26 13:49:19,508 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:49:37] 2025-11-26 13:49:19,508 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:49:37] 2025-11-26 13:49:31,475 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:49:37] 2025-11-26 13:49:31,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140456559486784)>', '<ExcThread(monitor, started 140456058922752)>']
[2025-11-26 08:49:37] 2025-11-26 13:49:31,619 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:49:37] 2025-11-26 13:49:31,619 | INFO     | [monitor] control thread has ended
[2025-11-26 08:49:37] 2025-11-26 13:49:36,576 | INFO     | all workflow threads have been joined
[2025-11-26 08:49:37] 2025-11-26 13:49:36,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:49:37] 2025-11-26 13:49:36,577 | INFO     | traces error code: 0
[2025-11-26 08:49:37] 2025-11-26 13:49:36,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:49:37] 2025-11-26 13:49:36,989 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:49:37] 2025-11-26 13:49:37,010 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:49:37] 2025-11-26 13:49:37,020 [wrapper] pilotpid: 719894
[2025-11-26 08:49:37] 2025-11-26 13:49:37,025 [wrapper] Pilot exit status: 0
[2025-11-26 08:49:37] 2025-11-26 13:49:37,041 [wrapper] pandaids: 6896450998
[2025-11-26 08:49:37] 2025-11-26 13:49:37,138 [wrapper] cleanup supervisor_pilot 2886813 719895
[2025-11-26 08:49:37] 2025-11-26 13:49:37,142 [wrapper] Test setup, not cleaning
[2025-11-26 08:49:37] 2025-11-26 13:49:37,145 [wrapper] apfmon messages muted
[2025-11-26 08:49:37] 2025-11-26 13:49:37,150 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:49:37] 2025-11-26 13:49:37,153 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:49:37]  *** Error codes and diagnostics ***
[2025-11-26 08:49:37]     "exeErrorCode": 0,
[2025-11-26 08:49:37]     "exeErrorDiag": "",
[2025-11-26 08:49:37]     "pilotErrorCode": 0,
[2025-11-26 08:49:37]     "pilotErrorDiag": "",
[2025-11-26 08:49:37]  *** Listing of results directory ***
[2025-11-26 08:49:37] total 1327624
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:21 queuedata.json
[2025-11-26 08:49:37] -rwx------. 1 boincer umatlas     36292 Nov 24 23:24 runpilot2-wrapper.sh
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas       100 Nov 25 20:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:49:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 20:00 run_atlas
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas       105 Nov 25 20:00 job.xml
[2025-11-26 08:49:37] -rw-r--r--. 2 boincer umatlas 407243555 Nov 25 20:00 EVNT.47483658._001507.pool.root.1
[2025-11-26 08:49:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 20:00 start_atlas.sh
[2025-11-26 08:49:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 20:00 shared
[2025-11-26 08:49:37] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 20:00 input.tar.gz
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas         0 Nov 25 20:00 boinc_lockfile
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 20:00 pandaJob.out
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas        57 Nov 25 20:00 setup.sh.local
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas    991877 Nov 25 20:01 agis_schedconf.cvmfs.json
[2025-11-26 08:49:37] drwx------. 5 boincer umatlas      4096 Nov 25 20:01 pilot3
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas       533 Nov 26 08:36 boinc_task_state.xml
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas      6845 Nov 26 08:47 init_data.xml
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas 931912688 Nov 26 08:47 HITS.47556149._004938.pool.root.1
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas      1057 Nov 26 08:48 memory_monitor_summary.json
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas   1516240 Nov 26 08:48 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas   2094042 Nov 26 08:48 log.47556149._004938.job.log.tgz.1
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas        95 Nov 26 08:48 pilot_heartbeat.json
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas      8633 Nov 26 08:48 heartbeat.json
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 08:49 boinc_mmap_file
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas        29 Nov 26 08:49 wrapper_checkpoint.txt
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas      4823 Nov 26 08:49 pilotlog.txt
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas   6109485 Nov 26 08:49 log.47556149._004938.job.log.1
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas       353 Nov 26 08:49 output.list
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas       620 Nov 26 08:49 runtime_log
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas   8222720 Nov 26 08:49 result.tar.gz
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 08:49 runtime_log.err
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas       661 Nov 26 08:49 8U3NDmmmzh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyJJKDmnJysFm.diag
[2025-11-26 08:49:37] -rw-r--r--. 1 boincer umatlas     21346 Nov 26 08:49 stderr.txt
[2025-11-26 08:49:37] HITS file was successfully produced:
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas 931912688 Nov 26 08:47 shared/HITS.pool.root.1
[2025-11-26 08:49:37]  *** Contents of shared directory: ***
[2025-11-26 08:49:37] total 1316408
[2025-11-26 08:49:37] -rw-r--r--. 2 boincer umatlas 407243555 Nov 25 20:00 ATLAS.root_0
[2025-11-26 08:49:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 20:00 start_atlas.sh
[2025-11-26 08:49:37] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 20:00 input.tar.gz
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas 931912688 Nov 26 08:47 HITS.pool.root.1
[2025-11-26 08:49:37] -rw-------. 1 boincer umatlas   8222720 Nov 26 08:49 result.tar.gz
08:49:38 (715702): run_atlas exited; CPU time 231308.292721
08:49:38 (715702): called boinc_finish(0)

</stderr_txt>
]]>

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