Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:40:05 (1063558): wrapper (7.7.26015): starting
18:40:05 (1063558): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 18:40:05] Arguments: --nthreads 8
[2025-11-25 18:40:05] Threads: 8
[2025-11-25 18:40:05] Checking for CVMFS
[2025-11-25 18:40:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:40:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:40:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:40:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:40:07] 2.13.3.0 12257 29232 378964 153302 1 115 30791855 32935937 42586 16776704 0 278762315 99.783 149827088 29540 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 18:40:07] CVMFS is ok
[2025-11-25 18:40:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:40:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:40:07] Further information can be found at the LHC@home message board.
[2025-11-25 18:40:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:40:07] Checking for apptainer binary...
[2025-11-25 18:40:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:40:07] Running /usr/bin/apptainer --version
[2025-11-25 18:40:07] apptainer version 1.4.4-1.el9
[2025-11-25 18:40:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:40:08] c-1-3.aglt2.org
[2025-11-25 18:40:08] apptainer works
[2025-11-25 18:40:08] Set ATHENA_PROC_NUMBER=8
[2025-11-25 18:40:08] Set ATHENA_CORE_NUMBER=8
[2025-11-25 18:40:08] Starting ATLAS job with PandaID=6896556870
[2025-11-25 18:40:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:20:14 (1063558): BOINC client no longer exists - exiting
16:20:14 (1063558): timer handler: client dead, exiting
16:27:26 (950210): wrapper (7.7.26015): starting
16:27:26 (950210): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 16:27:26] Arguments: --nthreads 10
[2025-11-26 16:27:26] Threads: 10
[2025-11-26 16:27:26] This job has been restarted, cleaning up previous attempt
[2025-11-26 16:27:26] Checking for CVMFS
[2025-11-26 16:27:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:27:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:27:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:27:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:27:27] 2.13.3.0 12257 30540 397544 153335 1 543 20772440 32935936 48019 16776704 0 292059870 99.784 156717556 29487 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:27:27] CVMFS is ok
[2025-11-26 16:27:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:27:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:27:27] Further information can be found at the LHC@home message board.
[2025-11-26 16:27:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:27:27] Checking for apptainer binary...
[2025-11-26 16:27:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:27:27] Running /usr/bin/apptainer --version
[2025-11-26 16:27:27] apptainer version 1.4.4-1.el9
[2025-11-26 16:27:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:27:27] c-1-3.aglt2.org
[2025-11-26 16:27:27] apptainer works
[2025-11-26 16:27:27] Set ATHENA_PROC_NUMBER=10
[2025-11-26 16:27:27] Set ATHENA_CORE_NUMBER=10
[2025-11-26 16:27:27] Starting ATLAS job with PandaID=6896556870
[2025-11-26 16:27:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:01:41]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:01:41] 2025-11-27 20:01:05,348 | INFO     | sum of square deviations: 731225116736.97
[2025-11-27 15:01:41] 2025-11-27 20:01:05,381 | INFO     | sum of deviations: 5577191816457.503
[2025-11-27 15:01:41] 2025-11-27 20:01:05,381 | INFO     | mean x: 1764233062.833208
[2025-11-27 15:01:41] 2025-11-27 20:01:05,382 | INFO     | mean y: 3289893.060856499
[2025-11-27 15:01:41] 2025-11-27 20:01:05,382 | INFO     | intersect: -13452848271.701462
[2025-11-27 15:01:41] 2025-11-27 20:01:05,383 | INFO     | chi2: 7.789944671125644
[2025-11-27 15:01:41] 2025-11-27 20:01:05,384 | INFO     | sum of square deviations: 723017616530.7279
[2025-11-27 15:01:41] 2025-11-27 20:01:05,416 | INFO     | sum of deviations: 6123381169415.7295
[2025-11-27 15:01:41] 2025-11-27 20:01:05,417 | INFO     | mean x: 1764232910.3476622
[2025-11-27 15:01:41] 2025-11-27 20:01:05,417 | INFO     | mean y: 3300040.5580693814
[2025-11-27 15:01:41] 2025-11-27 20:01:05,417 | INFO     | intersect: -14938342230.238882
[2025-11-27 15:01:41] 2025-11-27 20:01:05,418 | INFO     | chi2: 4.176220173003246
[2025-11-27 15:01:41] 2025-11-27 20:01:05,419 | INFO     | current chi2=4.176220173003246 (change=46.38960417160724 %)
[2025-11-27 15:01:41] 2025-11-27 20:01:05,420 | INFO     | sum of square deviations: 714871387862.5284
[2025-11-27 15:01:41] 2025-11-27 20:01:05,456 | INFO     | sum of deviations: 6440098348657.249
[2025-11-27 15:01:41] 2025-11-27 20:01:05,456 | INFO     | mean x: 1764232757.8584406
[2025-11-27 15:01:41] 2025-11-27 20:01:05,456 | INFO     | mean y: 3305963.6911430736
[2025-11-27 15:01:41] 2025-11-27 20:01:05,456 | INFO     | intersect: -15890227703.257177
[2025-11-27 15:01:41] 2025-11-27 20:01:05,458 | INFO     | chi2: 2.597885738765177
[2025-11-27 15:01:41] 2025-11-27 20:01:05,458 | INFO     | current chi2=2.597885738765177 (change=37.79337220870329 %)
[2025-11-27 15:01:41] 2025-11-27 20:01:05,460 | INFO     | sum of square deviations: 706786199325.2031
[2025-11-27 15:01:41] 2025-11-27 20:01:05,494 | INFO     | sum of deviations: 6436062187039.109
[2025-11-27 15:01:41] 2025-11-27 20:01:05,494 | INFO     | mean x: 1764232605.3655014
[2025-11-27 15:01:41] 2025-11-27 20:01:05,494 | INFO     | mean y: 3305885.288753799
[2025-11-27 15:01:41] 2025-11-27 20:01:05,494 | INFO     | intersect: -16061963599.847189
[2025-11-27 15:01:41] 2025-11-27 20:01:05,495 | INFO     | chi2: 2.5165439088109585
[2025-11-27 15:01:41] 2025-11-27 20:01:05,496 | INFO     | current chi2=2.5165439088109585 (change=3.131078043212233 %)
[2025-11-27 15:01:41] 2025-11-27 20:01:05,496 | INFO     | right removable region: 1315
[2025-11-27 15:01:41] 2025-11-27 20:01:05,497 | INFO     | sum of square deviations: 723014747291.8057
[2025-11-27 15:01:41] 2025-11-27 20:01:05,507 | INFO     | monitor loop #3921: job 0:6896556870 is in state 'finished'
[2025-11-27 15:01:41] 2025-11-27 20:01:05,507 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:01:41] 2025-11-27 20:01:05,552 | INFO     | sum of deviations: 5175696308985.653
[2025-11-27 15:01:41] 2025-11-27 20:01:05,552 | INFO     | mean x: 1764233215.3453996
[2025-11-27 15:01:41] 2025-11-27 20:01:05,552 | INFO     | mean y: 3297343.5422322773
[2025-11-27 15:01:41] 2025-11-27 20:01:05,552 | INFO     | intersect: -12625954514.812723
[2025-11-27 15:01:41] 2025-11-27 20:01:05,557 | INFO     | chi2: 5.741409081709105
[2025-11-27 15:01:41] 2025-11-27 20:01:05,558 | INFO     | current chi2=5.741409081709105 (change=26.297177655313515 %)
[2025-11-27 15:01:41] 2025-11-27 20:01:05,559 | INFO     | sum of square deviations: 714866377356.0941
[2025-11-27 15:01:41] 2025-11-27 20:01:05,592 | INFO     | sum of deviations: 5013990504245.01
[2025-11-27 15:01:41] 2025-11-27 20:01:05,593 | INFO     | mean x: 1764233367.8546555
[2025-11-27 15:01:41] 2025-11-27 20:01:05,593 | INFO     | mean y: 3300369.8697956093
[2025-11-27 15:01:41] 2025-11-27 20:01:05,593 | INFO     | intersect: -12370829445.007595
[2025-11-27 15:01:41] 2025-11-27 20:01:05,594 | INFO     | chi2: 5.610444847485302
[2025-11-27 15:01:41] 2025-11-27 20:01:05,595 | INFO     | current chi2=5.610444847485302 (change=2.281046906081426 %)
[2025-11-27 15:01:41] 2025-11-27 20:01:05,595 | INFO     | left removable region: 20
[2025-11-27 15:01:41] 2025-11-27 20:01:05,596 | INFO     | sum of square deviations: 673486361616.9338
[2025-11-27 15:01:41] 2025-11-27 20:01:05,656 | INFO     | sum of deviations: 5621453843564.518
[2025-11-27 15:01:41] 2025-11-27 20:01:05,657 | INFO     | mean x: 1764233184.9034748
[2025-11-27 15:01:41] 2025-11-27 20:01:05,657 | INFO     | mean y: 3321100.372200772
[2025-11-27 15:01:41] 2025-11-27 20:01:05,657 | INFO     | intersect: -14722374895.028852
[2025-11-27 15:01:41] 2025-11-27 20:01:05,658 | INFO     | chi2: 0.23358853456651826
[2025-11-27 15:01:41] 2025-11-27 20:01:05,659 | INFO     | current memory leak: 8.35 B/s (using 1295 data points, chi2=0.23)
[2025-11-27 15:01:41] 2025-11-27 20:01:05,660 | INFO     | could have reported an average CPU frequency of 2775 MHz (47 samples)
[2025-11-27 15:01:41] 2025-11-27 20:01:05,660 | INFO     | ..............................
[2025-11-27 15:01:41] 2025-11-27 20:01:05,661 | INFO     | . Timing measurements:
[2025-11-27 15:01:41] 2025-11-27 20:01:05,661 | INFO     | . get job = 0 s
[2025-11-27 15:01:41] 2025-11-27 20:01:05,661 | INFO     | . initial setup = 2 s
[2025-11-27 15:01:41] 2025-11-27 20:01:05,661 | INFO     | . payload setup = 8 s
[2025-11-27 15:01:41] 2025-11-27 20:01:05,661 | INFO     | . stage-in = 0 s
[2025-11-27 15:01:41] 2025-11-27 20:01:05,661 | INFO     | . payload execution = 81146 s
[2025-11-27 15:01:41] 2025-11-27 20:01:05,661 | INFO     | . stage-out = 5 s
[2025-11-27 15:01:41] 2025-11-27 20:01:05,661 | INFO     | . log creation = 1 s
[2025-11-27 15:01:41] 2025-11-27 20:01:05,661 | INFO     | ..............................
[2025-11-27 15:01:41] 2025-11-27 20:01:05,932 | INFO     | time since job start (81204s) is within the limit (172800.0s)
[2025-11-27 15:01:41] 2025-11-27 20:01:06,113 | INFO     | 
[2025-11-27 15:01:41] 2025-11-27 20:01:06,113 | INFO     | job summary report
[2025-11-27 15:01:41] 2025-11-27 20:01:06,113 | INFO     | --------------------------------------------------
[2025-11-27 15:01:41] 2025-11-27 20:01:06,113 | INFO     | PanDA job id: 6896556870
[2025-11-27 15:01:41] 2025-11-27 20:01:06,113 | INFO     | task id: 47556161
[2025-11-27 15:01:41] 2025-11-27 20:01:06,113 | INFO     | errors: (none)
[2025-11-27 15:01:41] 2025-11-27 20:01:06,113 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | pilot state: finished 
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | transexitcode: 0
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | exeerrorcode: 0
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | exeerrordiag: 
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | exitcode: 0
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | exitmsg: OK
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | cpuconsumptiontime: 275259 s
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | nevents: 1000
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | neventsw: 0
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | pid: 1006535
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | pgrp: 1006535
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | corecount: 10
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | event service: False
[2025-11-27 15:01:41] 2025-11-27 20:01:06,114 | INFO     | sizes: {0: 2284040, 1: 2284239, 7: 2284501, 11: 2284529, 81159: 2345440, 81166: 2354618, 81187: 2354808}
[2025-11-27 15:01:41] 2025-11-27 20:01:06,115 | INFO     | --------------------------------------------------
[2025-11-27 15:01:41] 2025-11-27 20:01:06,115 | INFO     | 
[2025-11-27 15:01:41] 2025-11-27 20:01:06,115 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 15:01:41] 2025-11-27 20:01:06,200 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,201 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,201 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,201 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,201 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,201 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,201 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,201 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,201 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,202 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,202 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,202 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,202 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,202 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,202 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,202 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,202 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,202 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:01:41] 2025-11-27 20:01:06,202 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,202 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:01:41] 2025-11-27 20:01:06,203 | INFO     | job 6896556870 has completed (purged errors)
[2025-11-27 15:01:41] 2025-11-27 20:01:06,209 | INFO     | overall cleanup function is called
[2025-11-27 15:01:41] 2025-11-27 20:01:07,244 | INFO     | --- collectZombieJob: --- 10, [1006535]
[2025-11-27 15:01:41] 2025-11-27 20:01:07,244 | INFO     | zombie collector waiting for pid 1006535
[2025-11-27 15:01:41] 2025-11-27 20:01:07,244 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:01:41] 2025-11-27 20:01:07,244 | INFO     | collected zombie processes
[2025-11-27 15:01:41] 2025-11-27 20:01:07,244 | INFO     | will attempt to kill all subprocesses of pid=1006535
[2025-11-27 15:01:41] 2025-11-27 20:01:08,341 | INFO     | process IDs to be killed: [1006535] (in reverse order)
[2025-11-27 15:01:41] 2025-11-27 20:01:08,725 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:01:41] 2025-11-27 20:01:08,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:01:41] 2025-11-27 20:01:08,805 | INFO     | did not find any defunct processes belonging to 1006535
[2025-11-27 15:01:41] 2025-11-27 20:01:08,940 | INFO     | did not find any defunct processes belonging to 1006535
[2025-11-27 15:01:41] 2025-11-27 20:01:08,963 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:01:41] 2025-11-27 20:01:08,964 | INFO     | ready for new job
[2025-11-27 15:01:41] 2025-11-27 20:01:08,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:01:41] 2025-11-27 20:01:08,985 | INFO     | ***************************************
[2025-11-27 15:01:41] 2025-11-27 20:01:08,985 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:01:41] 2025-11-27 20:01:08,985 | INFO     | ***************************************
[2025-11-27 15:01:41] 2025-11-27 20:01:08,985 | INFO     | 
[2025-11-27 15:01:41] 2025-11-27 20:01:09,035 | INFO     | architecture information:
[2025-11-27 15:01:41] 2025-11-27 20:01:09,043 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:01:41] 2025-11-27 20:01:09,155 | INFO     | cat /etc/os-release:
[2025-11-27 15:01:41] NAME="CentOS Linux"
[2025-11-27 15:01:41] VERSION="7 (Core)"
[2025-11-27 15:01:41] ID="centos"
[2025-11-27 15:01:41] ID_LIKE="rhel fedora"
[2025-11-27 15:01:41] VERSION_ID="7"
[2025-11-27 15:01:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:01:41] ANSI_COLOR="0;31"
[2025-11-27 15:01:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:01:41] HOME_URL="https://www.centos.org/"
[2025-11-27 15:01:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:01:41] 
[2025-11-27 15:01:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:01:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:01:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:01:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:01:41] 
[2025-11-27 15:01:41] 2025-11-27 20:01:09,155 | INFO     | ***************************************
[2025-11-27 15:01:41] 2025-11-27 20:01:09,658 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 15:01:41] 2025-11-27 20:01:09,694 | INFO     | sufficient remaining disk space (67232595968 B)
[2025-11-27 15:01:41] 2025-11-27 20:01:09,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:01:41] 2025-11-27 20:01:09,695 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:01:41] 2025-11-27 20:01:09,695 | INFO     | update_server=False
[2025-11-27 15:01:41] 2025-11-27 20:01:09,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:01:41] 2025-11-27 20:01:09,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:01:41] 2025-11-27 20:01:09,701 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:01:41] 2025-11-27 20:01:09,701 | INFO     | aborting loop
[2025-11-27 15:01:41] 2025-11-27 20:01:10,429 | INFO     | all data control threads have been joined
[2025-11-27 15:01:41] 2025-11-27 20:01:10,501 | INFO     | all job control threads have been joined
[2025-11-27 15:01:41] 2025-11-27 20:01:10,511 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:01:41] 2025-11-27 20:01:10,701 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:10,715 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:10,769 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:10,782 | INFO     | all payload control threads have been joined
[2025-11-27 15:01:41] 2025-11-27 20:01:10,791 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:01:41] 2025-11-27 20:01:11,091 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:11,092 | INFO     | [job] validate thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:11,205 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:11,307 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:11,389 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:11,435 | INFO     | [data] control thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:11,507 | INFO     | [job] control thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:11,566 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:11,583 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:11,787 | INFO     | [payload] control thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:11,797 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:12,531 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:13,711 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:01:41] 2025-11-27 20:01:16,910 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:01:41] 2025-11-27 20:01:18,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140359165626176)>', '<ExcThread(monitor, started 140358809786112)>']
[2025-11-27 15:01:41] 2025-11-27 20:01:23,768 | INFO     | all workflow threads have been joined
[2025-11-27 15:01:41] 2025-11-27 20:01:23,768 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:01:41] 2025-11-27 20:01:23,768 | INFO     | traces error code: 0
[2025-11-27 15:01:41] 2025-11-27 20:01:23,769 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:01:41] 2025-11-27 20:01:40,168 | INFO     | PID=971219 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:01:41] 2025-11-27 20:01:40,169 | INFO     | .. there are 72 such processes running
[2025-11-27 15:01:41] 2025-11-27 20:01:40,170 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:01:41] 2025-11-27 20:01:40,170 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:01:41] 2025-11-27 20:01:40,170 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:01:41] 2025-11-27 20:01:40,170 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:01:41] 2025-11-27 20:01:40,171 | INFO     | [monitor] control thread has ended
[2025-11-27 15:01:41] 2025-11-27 20:01:40,554 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:01:41] 2025-11-27 20:01:40,578 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:01:41] 2025-11-27 20:01:40,581 [wrapper] pilotpid: 971219
[2025-11-27 15:01:41] 2025-11-27 20:01:40,584 [wrapper] Pilot exit status: 0
[2025-11-27 15:01:41] 2025-11-27 20:01:40,636 [wrapper] pandaids: 6896556870 6896556870
[2025-11-27 15:01:41] 2025-11-27 20:01:40,876 [wrapper] cleanup supervisor_pilot  788634 971222
[2025-11-27 15:01:41] 2025-11-27 20:01:40,882 [wrapper] Test setup, not cleaning
[2025-11-27 15:01:41] 2025-11-27 20:01:40,885 [wrapper] apfmon messages muted
[2025-11-27 15:01:41] 2025-11-27 20:01:40,888 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:01:41] 2025-11-27 20:01:40,891 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:01:41]  *** Error codes and diagnostics ***
[2025-11-27 15:01:41]     "exeErrorCode": 0,
[2025-11-27 15:01:41]     "exeErrorDiag": "",
[2025-11-27 15:01:41]     "pilotErrorCode": 0,
[2025-11-27 15:01:41]     "pilotErrorDiag": "",
[2025-11-27 15:01:41]  *** Listing of results directory ***
[2025-11-27 15:01:41] total 1731404
[2025-11-27 15:01:41] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:38 queuedata.json
[2025-11-27 15:01:41] -rwx------. 1 boincer umatlas     36292 Nov 24 23:38 runpilot2-wrapper.sh
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas       100 Nov 25 18:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:01:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 18:40 run_atlas
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas       105 Nov 25 18:40 job.xml
[2025-11-27 15:01:41] -rw-r--r--. 3 boincer umatlas 408663785 Nov 25 18:40 EVNT.47483658._002083.pool.root.1
[2025-11-27 15:01:41] -rw-r--r--. 3 boincer umatlas 408663785 Nov 25 18:40 ATLAS.root_0
[2025-11-27 15:01:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:40 start_atlas.sh
[2025-11-27 15:01:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 18:40 shared
[2025-11-27 15:01:41] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 18:40 input.tar.gz
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas         0 Nov 25 18:40 boinc_lockfile
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 16:27 pandaJob.out
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas        57 Nov 26 16:27 setup.sh.local
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas    991538 Nov 26 16:27 agis_schedconf.cvmfs.json
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas       534 Nov 27 14:48 boinc_task_state.xml
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas      6841 Nov 27 14:56 init_data.xml
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas 928546219 Nov 27 14:59 HITS.47556161._000663.pool.root.1
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas      1057 Nov 27 15:00 memory_monitor_summary.json
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas   2522856 Nov 27 15:00 log.47556161._000663.job.log.tgz.1
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas      8627 Nov 27 15:01 heartbeat.json
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:01 boinc_mmap_file
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas        30 Nov 27 15:01 wrapper_checkpoint.txt
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas        96 Nov 27 15:01 pilot_heartbeat.json
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas       822 Nov 27 15:01 pilotlog.txt
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas   9055255 Nov 27 15:01 log.47556161._000663.job.log.1
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas       353 Nov 27 15:01 output.list
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:01 runtime_log
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas  11601920 Nov 27 15:01 result.tar.gz
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas      9415 Nov 27 15:01 runtime_log.err
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas       782 Nov 27 15:01 BCKLDmlzzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDms7LKDmmLGFNn.diag
[2025-11-27 15:01:41] -rw-r--r--. 1 boincer umatlas     23480 Nov 27 15:01 stderr.txt
[2025-11-27 15:01:41] HITS file was successfully produced:
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas 928546219 Nov 27 14:59 shared/HITS.pool.root.1
[2025-11-27 15:01:41]  *** Contents of shared directory: ***
[2025-11-27 15:01:41] total 1317808
[2025-11-27 15:01:41] -rw-r--r--. 3 boincer umatlas 408663785 Nov 25 18:40 ATLAS.root_0
[2025-11-27 15:01:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:40 start_atlas.sh
[2025-11-27 15:01:41] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 18:40 input.tar.gz
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas 928546219 Nov 27 14:59 HITS.pool.root.1
[2025-11-27 15:01:41] -rw-------. 1 boincer umatlas  11601920 Nov 27 15:01 result.tar.gz
15:01:42 (950210): run_atlas exited; CPU time 278870.081638
15:01:42 (950210): called boinc_finish(0)

</stderr_txt>
]]>

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