Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:44:02 (2247657): wrapper (7.7.26015): starting
00:44:02 (2247657): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 00:44:02] Arguments: --nthreads 3
[2025-11-26 00:44:02] Threads: 3
[2025-11-26 00:44:02] Checking for CVMFS
[2025-11-26 00:44:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:44:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:44:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:44:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:44:02] 2.9.2.0 2184780 13 50800 153302 2 88 35451108 36864000 0 130560 0 187829 100.000 2 32 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 00:44:02] CVMFS is ok
[2025-11-26 00:44:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:44:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:44:02] Further information can be found at the LHC@home message board.
[2025-11-26 00:44:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:44:02] Checking for apptainer binary...
[2025-11-26 00:44:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:44:02] Running /usr/bin/apptainer --version
[2025-11-26 00:44:02] apptainer version 1.4.1-1.1
[2025-11-26 00:44:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:44:02] thA335
[2025-11-26 00:44:02] apptainer works
[2025-11-26 00:44:02] Set ATHENA_PROC_NUMBER=3
[2025-11-26 00:44:02] Set ATHENA_CORE_NUMBER=3
[2025-11-26 00:44:02] Starting ATLAS job with PandaID=6895674345
[2025-11-26 00:44:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 00:48:20]  *** The last 200 lines of the pilot log: ***
[2025-11-26 00:48:20] NAME="CentOS Linux"
[2025-11-26 00:48:20] VERSION="7 (Core)"
[2025-11-26 00:48:20] ID="centos"
[2025-11-26 00:48:20] ID_LIKE="rhel fedora"
[2025-11-26 00:48:20] VERSION_ID="7"
[2025-11-26 00:48:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 00:48:20] ANSI_COLOR="0;31"
[2025-11-26 00:48:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 00:48:20] HOME_URL="https://www.centos.org/"
[2025-11-26 00:48:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 00:48:20] 
[2025-11-26 00:48:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 00:48:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 00:48:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 00:48:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 00:48:20] 
[2025-11-26 00:48:20] 2025-11-25 23:47:23,971 | INFO     | ***************************************
[2025-11-26 00:48:20] 2025-11-25 23:47:24,474 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 00:48:20] 2025-11-25 23:47:24,488 | INFO     | sufficient remaining disk space (826569392128 B)
[2025-11-26 00:48:20] 2025-11-25 23:47:24,488 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 00:48:20] 2025-11-25 23:47:24,488 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 00:48:20] 2025-11-25 23:47:24,488 | INFO     | update_server=False
[2025-11-26 00:48:20] 2025-11-25 23:47:24,488 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 00:48:20] 2025-11-25 23:47:24,580 | INFO     | all data control threads have been joined
[2025-11-26 00:48:20] 2025-11-25 23:47:24,871 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 00:48:20] 2025-11-25 23:47:24,881 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 00:48:20] 2025-11-25 23:47:24,881 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 00:48:20] 2025-11-25 23:47:24,882 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:48:20] 2025-11-25 23:47:24,882 | INFO     | will abort loop
[2025-11-26 00:48:20] 2025-11-25 23:47:25,494 | INFO     | [job] retrieve thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:25,543 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:25,584 | INFO     | [data] control thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:25,810 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:25,869 | INFO     | all job control threads have been joined
[2025-11-26 00:48:20] 2025-11-25 23:47:25,888 | INFO     | [job] job monitor thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:25,898 | INFO     | all payload control threads have been joined
[2025-11-26 00:48:20] 2025-11-25 23:47:25,992 | INFO     | [data] copytool_in thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:26,224 | INFO     | [payload] validate_post thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:26,695 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:26,768 | INFO     | [payload] failed_post thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:26,875 | INFO     | [job] control thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:26,878 | INFO     | [data] copytool_out thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:26,897 | INFO     | [job] validate thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:26,903 | INFO     | [payload] control thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:26,992 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:27,427 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:48:20] 2025-11-25 23:47:27,588 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 00:48:20] 2025-11-25 23:47:28,431 | INFO     | [job] queue monitor thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:31,595 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 00:48:20] 2025-11-25 23:47:55,514 | INFO     | PID=2251405 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 00:48:20] 2025-11-25 23:47:55,514 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 00:48:20] 2025-11-25 23:47:55,514 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 00:48:20] 2025-11-25 23:47:55,514 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 00:48:20] 2025-11-25 23:48:14,670 | INFO     | [monitor] cgroup control has ended
[2025-11-26 00:48:20] 2025-11-25 23:48:15,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139876934809408)>', '<ExcThread(monitor, started 139876129298176)>']
[2025-11-26 00:48:20] 2025-11-25 23:48:15,615 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 00:48:20] 2025-11-25 23:48:15,615 | INFO     | [monitor] control thread has ended
[2025-11-26 00:48:20] 2025-11-25 23:48:20,470 | INFO     | all workflow threads have been joined
[2025-11-26 00:48:20] 2025-11-25 23:48:20,471 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 00:48:20] 2025-11-25 23:48:20,472 | INFO     | traces error code: 0
[2025-11-26 00:48:20] 2025-11-25 23:48:20,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 00:48:20] 2025-11-25 23:48:20,519 [wrapper] ==== pilot stdout END ====
[2025-11-26 00:48:20] 2025-11-25 23:48:20,522 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 00:48:20] 2025-11-25 23:48:20,525 [wrapper] pilotpid: 2251405
[2025-11-26 00:48:20] 2025-11-25 23:48:20,528 [wrapper] Pilot exit status: 0
[2025-11-26 00:48:20] 2025-11-25 23:48:20,535 [wrapper] pandaids: 6895674345
[2025-11-26 00:48:20] 2025-11-25 23:48:20,553 [wrapper] cleanup supervisor_pilot 2251411 2251406
[2025-11-26 00:48:20] 2025-11-25 23:48:20,556 [wrapper] Test setup, not cleaning
[2025-11-26 00:48:20] 2025-11-25 23:48:20,559 [wrapper] apfmon messages muted
[2025-11-26 00:48:20] 2025-11-25 23:48:20,562 [wrapper] ==== wrapper stdout END ====
[2025-11-26 00:48:20] 2025-11-25 23:48:20,565 [wrapper] ==== wrapper stderr END ====
[2025-11-26 00:48:20]  *** Error codes and diagnostics ***
[2025-11-26 00:48:20]     "exeErrorCode": 65,
[2025-11-26 00:48:20]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 00:48:20]     "pilotErrorCode": 1305,
[2025-11-26 00:48:20]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 00:48:20]  *** Listing of results directory ***
[2025-11-26 00:48:20] total 403884
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc    576529 Nov 24 14:08 pilot3.tar.gz
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc      5112 Nov 24 14:31 queuedata.json
[2025-11-26 00:48:20] -rwx------ 1 boinc boinc     36292 Nov 24 14:33 runpilot2-wrapper.sh
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc       100 Nov 26 00:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 00:48:20] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 00:44 run_atlas
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc       105 Nov 26 00:44 job.xml
[2025-11-26 00:48:20] -rw-r--r-- 2 boinc boinc 409387035 Nov 26 00:44 EVNT.47483658._001354.pool.root.1
[2025-11-26 00:48:20] -rw-r--r-- 2 boinc boinc    590109 Nov 26 00:44 input.tar.gz
[2025-11-26 00:48:20] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:44 start_atlas.sh
[2025-11-26 00:48:20] drwxrwx--x 2 boinc boinc      4096 Nov 26 00:44 shared
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:44 boinc_setup_complete
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc      6196 Nov 26 00:44 init_data.xml
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:44 boinc_lockfile
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc      2786 Nov 26 00:44 pandaJob.out
[2025-11-26 00:48:20] -rw------- 1 boinc boinc    991877 Nov 26 00:44 agis_schedconf.cvmfs.json
[2025-11-26 00:48:20] -rw------- 1 boinc boinc   1516240 Nov 26 00:44 agis_ddmendpoints.agis.ALL.json
[2025-11-26 00:48:20] drwx------ 5 boinc boinc      4096 Nov 26 00:44 pilot3
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc       522 Nov 26 00:45 boinc_task_state.xml
[2025-11-26 00:48:20] -rw------- 1 boinc boinc       980 Nov 26 00:45 memory_monitor_summary.json
[2025-11-26 00:48:20] -rw------- 1 boinc boinc     55601 Nov 26 00:45 log.47556149._003405.job.log.tgz.1
[2025-11-26 00:48:20] -rw------- 1 boinc boinc        95 Nov 26 00:47 pilot_heartbeat.json
[2025-11-26 00:48:20] -rw------- 1 boinc boinc      8384 Nov 26 00:47 heartbeat.json
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc      8192 Nov 26 00:48 boinc_mmap_file
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc        22 Nov 26 00:48 wrapper_checkpoint.txt
[2025-11-26 00:48:20] -rw------- 1 boinc boinc      4938 Nov 26 00:48 pilotlog.txt
[2025-11-26 00:48:20] -rw------- 1 boinc boinc     91883 Nov 26 00:48 log.47556149._003405.job.log.1
[2025-11-26 00:48:20] -rw------- 1 boinc boinc       186 Nov 26 00:48 output.list
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc       620 Nov 26 00:48 runtime_log
[2025-11-26 00:48:20] -rw------- 1 boinc boinc    163840 Nov 26 00:48 result.tar.gz
[2025-11-26 00:48:20] -rw------- 1 boinc boinc       649 Nov 26 00:48 vGWNDmwrlh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmy4IKDmVAFyJo.diag
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc      8744 Nov 26 00:48 runtime_log.err
[2025-11-26 00:48:20] -rw-r--r-- 1 boinc boinc      9304 Nov 26 00:48 stderr.txt
[2025-11-26 00:48:20] No HITS result produced
[2025-11-26 00:48:20]  *** Contents of shared directory: ***
[2025-11-26 00:48:20] total 400556
[2025-11-26 00:48:20] -rw-r--r-- 2 boinc boinc 409387035 Nov 26 00:44 ATLAS.root_0
[2025-11-26 00:48:20] -rw-r--r-- 2 boinc boinc    590109 Nov 26 00:44 input.tar.gz
[2025-11-26 00:48:20] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:44 start_atlas.sh
[2025-11-26 00:48:20] -rw------- 1 boinc boinc    163840 Nov 26 00:48 result.tar.gz
00:48:21 (2247657): run_atlas exited; CPU time 30.230562
00:48:21 (2247657): called boinc_finish(0)

</stderr_txt>
]]>

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