Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:39:02 (1297137): wrapper (7.7.26015): starting
19:39:02 (1297137): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:39:02] Arguments: --nthreads 8
[2025-11-25 19:39:02] Threads: 8
[2025-11-25 19:39:02] Checking for CVMFS
[2025-11-25 19:39:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:39:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:39:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:39:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:39:04] 2.13.3.0 12257 29291 377944 153303 2 117 30966336 32935937 43277 16776704 0 279057245 99.784 149838625 29540 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:39:04] CVMFS is ok
[2025-11-25 19:39:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:39:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:39:04] Further information can be found at the LHC@home message board.
[2025-11-25 19:39:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:39:04] Checking for apptainer binary...
[2025-11-25 19:39:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:39:04] Running /usr/bin/apptainer --version
[2025-11-25 19:39:04] apptainer version 1.4.4-1.el9
[2025-11-25 19:39:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:39:46] c-1-3.aglt2.org
[2025-11-25 19:39:46] apptainer works
[2025-11-25 19:39:46] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:39:46] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:39:46] Starting ATLAS job with PandaID=6896556878
[2025-11-25 19:39:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:05:49]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:05:49] 2025-11-26 18:05:00,688 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:05:49] 2025-11-26 18:05:00,694 | INFO     | sum of square deviations: 333938346488.68884
[2025-11-26 13:05:49] 2025-11-26 18:05:00,735 | INFO     | sum of deviations: 1345029125283.5771
[2025-11-26 13:05:49] 2025-11-26 18:05:00,735 | INFO     | mean x: 1764148997.8663414
[2025-11-26 13:05:49] 2025-11-26 18:05:00,735 | INFO     | mean y: 2888083.3326829267
[2025-11-26 13:05:49] 2025-11-26 18:05:00,735 | INFO     | intersect: -7102710325.535396
[2025-11-26 13:05:49] 2025-11-26 18:05:00,741 | INFO     | chi2: 10.881938694607348
[2025-11-26 13:05:49] 2025-11-26 18:05:00,742 | INFO     | sum of square deviations: 329076323452.4072
[2025-11-26 13:05:49] 2025-11-26 18:05:00,787 | INFO     | sum of deviations: 1680925981009.0996
[2025-11-26 13:05:49] 2025-11-26 18:05:00,787 | INFO     | mean x: 1764148845.380392
[2025-11-26 13:05:49] 2025-11-26 18:05:00,788 | INFO     | mean y: 2898616.004901961
[2025-11-26 13:05:49] 2025-11-26 18:05:00,788 | INFO     | intersect: -9008395777.515873
[2025-11-26 13:05:49] 2025-11-26 18:05:00,789 | INFO     | chi2: 7.873116959947908
[2025-11-26 13:05:49] 2025-11-26 18:05:00,789 | INFO     | current chi2=7.873116959947908 (change=27.649684666487694 %)
[2025-11-26 13:05:49] 2025-11-26 18:05:00,790 | INFO     | sum of square deviations: 324261680950.5078
[2025-11-26 13:05:49] 2025-11-26 18:05:00,837 | INFO     | sum of deviations: 2034713360469.3618
[2025-11-26 13:05:49] 2025-11-26 18:05:00,838 | INFO     | mean x: 1764148692.8935962
[2025-11-26 13:05:49] 2025-11-26 18:05:00,838 | INFO     | mean y: 2909814.99408867
[2025-11-26 13:05:49] 2025-11-26 18:05:00,838 | INFO     | intersect: -11066967158.329298
[2025-11-26 13:05:49] 2025-11-26 18:05:00,839 | INFO     | chi2: 4.499552228503129
[2025-11-26 13:05:49] 2025-11-26 18:05:00,840 | INFO     | current chi2=4.499552228503129 (change=42.84916315363744 %)
[2025-11-26 13:05:49] 2025-11-26 18:05:00,845 | INFO     | sum of square deviations: 319493815864.40027
[2025-11-26 13:05:49] 2025-11-26 18:05:00,884 | INFO     | sum of deviations: 2111170817343.4028
[2025-11-26 13:05:49] 2025-11-26 18:05:00,884 | INFO     | mean x: 1764148540.4
[2025-11-26 13:05:49] 2025-11-26 18:05:00,885 | INFO     | mean y: 2912253.5732673267
[2025-11-26 13:05:49] 2025-11-26 18:05:00,885 | INFO     | intersect: -11654336591.368881
[2025-11-26 13:05:49] 2025-11-26 18:05:00,886 | INFO     | chi2: 4.129785970699889
[2025-11-26 13:05:49] 2025-11-26 18:05:00,886 | INFO     | current chi2=4.129785970699889 (change=8.217845666084202 %)
[2025-11-26 13:05:49] 2025-11-26 18:05:00,886 | INFO     | right removable region: 1009
[2025-11-26 13:05:49] 2025-11-26 18:05:00,892 | INFO     | sum of square deviations: 329074531272.40674
[2025-11-26 13:05:49] 2025-11-26 18:05:00,933 | INFO     | sum of deviations: 978929224868.9448
[2025-11-26 13:05:49] 2025-11-26 18:05:00,933 | INFO     | mean x: 1764149150.380392
[2025-11-26 13:05:49] 2025-11-26 18:05:00,933 | INFO     | mean y: 2899559.237254902
[2025-11-26 13:05:49] 2025-11-26 18:05:00,933 | INFO     | intersect: -5245082269.248582
[2025-11-26 13:05:49] 2025-11-26 18:05:00,935 | INFO     | chi2: 7.624080610607313
[2025-11-26 13:05:49] 2025-11-26 18:05:00,939 | INFO     | current chi2=7.624080610607313 (change=29.93821391049095 %)
[2025-11-26 13:05:49] 2025-11-26 18:05:00,941 | INFO     | sum of square deviations: 324258345114.07806
[2025-11-26 13:05:49] 2025-11-26 18:05:00,983 | INFO     | sum of deviations: 833374664121.6781
[2025-11-26 13:05:49] 2025-11-26 18:05:00,983 | INFO     | mean x: 1764149302.8916256
[2025-11-26 13:05:49] 2025-11-26 18:05:00,983 | INFO     | mean y: 2904161.715270936
[2025-11-26 13:05:49] 2025-11-26 18:05:00,983 | INFO     | intersect: -4531126665.588703
[2025-11-26 13:05:49] 2025-11-26 18:05:00,989 | INFO     | chi2: 7.010339169161172
[2025-11-26 13:05:49] 2025-11-26 18:05:00,989 | INFO     | current chi2=7.010339169161172 (change=8.050038723255998 %)
[2025-11-26 13:05:49] 2025-11-26 18:05:00,989 | INFO     | left removable region: 20
[2025-11-26 13:05:49] 2025-11-26 18:05:00,991 | INFO     | sum of square deviations: 299975274196.1859
[2025-11-26 13:05:49] 2025-11-26 18:05:01,035 | INFO     | sum of deviations: 1496749410768.955
[2025-11-26 13:05:49] 2025-11-26 18:05:01,035 | INFO     | mean x: 1764149119.9302325
[2025-11-26 13:05:49] 2025-11-26 18:05:01,035 | INFO     | mean y: 2931990.289180991
[2025-11-26 13:05:49] 2025-11-26 18:05:01,035 | INFO     | intersect: -8799424013.350132
[2025-11-26 13:05:49] 2025-11-26 18:05:01,037 | INFO     | chi2: 0.13696842893528785
[2025-11-26 13:05:49] 2025-11-26 18:05:01,037 | INFO     | current memory leak: 4.99 B/s (using 989 data points, chi2=0.14)
[2025-11-26 13:05:49] 2025-11-26 18:05:01,038 | INFO     | could have reported an average CPU frequency of 2741 MHz (37 samples)
[2025-11-26 13:05:49] 2025-11-26 18:05:01,038 | INFO     | ..............................
[2025-11-26 13:05:49] 2025-11-26 18:05:01,038 | INFO     | . Timing measurements:
[2025-11-26 13:05:49] 2025-11-26 18:05:01,039 | INFO     | . get job = 0 s
[2025-11-26 13:05:49] 2025-11-26 18:05:01,044 | INFO     | . initial setup = 5 s
[2025-11-26 13:05:49] 2025-11-26 18:05:01,044 | INFO     | . payload setup = 36 s
[2025-11-26 13:05:49] 2025-11-26 18:05:01,044 | INFO     | . stage-in = 0 s
[2025-11-26 13:05:49] 2025-11-26 18:05:01,044 | INFO     | . payload execution = 62519 s
[2025-11-26 13:05:49] 2025-11-26 18:05:01,044 | INFO     | . stage-out = 6 s
[2025-11-26 13:05:49] 2025-11-26 18:05:01,044 | INFO     | . log creation = 1 s
[2025-11-26 13:05:49] 2025-11-26 18:05:01,044 | INFO     | ..............................
[2025-11-26 13:05:49] 2025-11-26 18:05:01,292 | INFO     | 
[2025-11-26 13:05:49] 2025-11-26 18:05:01,293 | INFO     | job summary report
[2025-11-26 13:05:49] 2025-11-26 18:05:01,293 | INFO     | --------------------------------------------------
[2025-11-26 13:05:49] 2025-11-26 18:05:01,293 | INFO     | PanDA job id: 6896556878
[2025-11-26 13:05:49] 2025-11-26 18:05:01,293 | INFO     | task id: 47556161
[2025-11-26 13:05:49] 2025-11-26 18:05:01,293 | INFO     | errors: (none)
[2025-11-26 13:05:49] 2025-11-26 18:05:01,293 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:05:49] 2025-11-26 18:05:01,293 | INFO     | pilot state: finished 
[2025-11-26 13:05:49] 2025-11-26 18:05:01,293 | INFO     | transexitcode: 0
[2025-11-26 13:05:49] 2025-11-26 18:05:01,293 | INFO     | exeerrorcode: 0
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | exeerrordiag: 
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | exitcode: 0
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | exitmsg: OK
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | cpuconsumptiontime: 271943 s
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | nevents: 1000
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | neventsw: 0
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | pid: 1321606
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | pgrp: 1321606
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | corecount: 8
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | event service: False
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | sizes: {0: 2284084, 1: 2284283, 2: 2284283, 13: 2284311, 24: 2284367, 33: 2284657, 35: 2284841, 62561: 2337219, 62569: 2346213, 62570: 2346269, 62602: 2346515}
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | --------------------------------------------------
[2025-11-26 13:05:49] 2025-11-26 18:05:01,294 | INFO     | 
[2025-11-26 13:05:49] 2025-11-26 18:05:01,295 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 13:05:49] 2025-11-26 18:05:01,346 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,347 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,347 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,347 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,347 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,347 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,347 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,347 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,348 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:05:49] 2025-11-26 18:05:01,349 | INFO     | job 6896556878 has completed (purged errors)
[2025-11-26 13:05:49] 2025-11-26 18:05:01,349 | INFO     | overall cleanup function is called
[2025-11-26 13:05:49] 2025-11-26 18:05:02,394 | INFO     | --- collectZombieJob: --- 10, [1321606]
[2025-11-26 13:05:49] 2025-11-26 18:05:02,394 | INFO     | zombie collector waiting for pid 1321606
[2025-11-26 13:05:49] 2025-11-26 18:05:02,394 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:05:49] 2025-11-26 18:05:02,394 | INFO     | collected zombie processes
[2025-11-26 13:05:49] 2025-11-26 18:05:02,394 | INFO     | will attempt to kill all subprocesses of pid=1321606
[2025-11-26 13:05:49] 2025-11-26 18:05:08,394 | INFO     | PID=1304183 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:05:49] 2025-11-26 18:05:08,394 | INFO     | .. there are 78 such processes running
[2025-11-26 13:05:49] 2025-11-26 18:05:08,447 | INFO     | process IDs to be killed: [1321606] (in reverse order)
[2025-11-26 13:05:49] 2025-11-26 18:05:09,040 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:05:49] 2025-11-26 18:05:09,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:05:49] 2025-11-26 18:05:09,072 | INFO     | did not find any defunct processes belonging to 1321606
[2025-11-26 13:05:49] 2025-11-26 18:05:09,160 | INFO     | did not find any defunct processes belonging to 1321606
[2025-11-26 13:05:49] 2025-11-26 18:05:09,229 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:05:49] 2025-11-26 18:05:09,229 | INFO     | ready for new job
[2025-11-26 13:05:49] 2025-11-26 18:05:09,230 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:05:49] 2025-11-26 18:05:09,239 | INFO     | ***************************************
[2025-11-26 13:05:49] 2025-11-26 18:05:09,239 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:05:49] 2025-11-26 18:05:09,239 | INFO     | ***************************************
[2025-11-26 13:05:49] 2025-11-26 18:05:09,239 | INFO     | 
[2025-11-26 13:05:49] 2025-11-26 18:05:09,256 | INFO     | architecture information:
[2025-11-26 13:05:49] 2025-11-26 18:05:09,269 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:05:49] 2025-11-26 18:05:09,348 | INFO     | cat /etc/os-release:
[2025-11-26 13:05:49] NAME="CentOS Linux"
[2025-11-26 13:05:49] VERSION="7 (Core)"
[2025-11-26 13:05:49] ID="centos"
[2025-11-26 13:05:49] ID_LIKE="rhel fedora"
[2025-11-26 13:05:49] VERSION_ID="7"
[2025-11-26 13:05:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:05:49] ANSI_COLOR="0;31"
[2025-11-26 13:05:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:05:49] HOME_URL="https://www.centos.org/"
[2025-11-26 13:05:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:05:49] 
[2025-11-26 13:05:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:05:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:05:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:05:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:05:49] 
[2025-11-26 13:05:49] 2025-11-26 18:05:09,349 | INFO     | ***************************************
[2025-11-26 13:05:49] 2025-11-26 18:05:09,854 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 13:05:49] 2025-11-26 18:05:09,898 | INFO     | sufficient remaining disk space (65581088768 B)
[2025-11-26 13:05:49] 2025-11-26 18:05:09,898 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:05:49] 2025-11-26 18:05:09,898 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:05:49] 2025-11-26 18:05:09,898 | INFO     | update_server=False
[2025-11-26 13:05:49] 2025-11-26 18:05:09,899 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:05:49] 2025-11-26 18:05:09,899 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:05:49] 2025-11-26 18:05:09,899 | INFO     | aborting loop
[2025-11-26 13:05:49] 2025-11-26 18:05:09,899 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:05:49] 2025-11-26 18:05:10,339 | INFO     | all job control threads have been joined
[2025-11-26 13:05:49] 2025-11-26 18:05:10,413 | INFO     | all data control threads have been joined
[2025-11-26 13:05:49] 2025-11-26 18:05:10,654 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:05:49] 2025-11-26 18:05:10,913 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:10,931 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:10,939 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:10,939 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:10,940 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:05:49] 2025-11-26 18:05:10,996 | INFO     | [job] validate thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:11,032 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:11,032 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:11,265 | INFO     | all payload control threads have been joined
[2025-11-26 13:05:49] 2025-11-26 18:05:11,373 | INFO     | [job] control thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:11,420 | INFO     | [data] control thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:11,458 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:11,661 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:11,689 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:11,828 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:11,906 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:12,271 | INFO     | [payload] control thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:14,959 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:05:49] 2025-11-26 18:05:41,398 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:05:49] 2025-11-26 18:05:42,421 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140187744909120)>', '<ExcThread(monitor, started 140187078203136)>']
[2025-11-26 13:05:49] 2025-11-26 18:05:43,385 | INFO     | PID=1304183 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:05:49] 2025-11-26 18:05:43,390 | INFO     | .. there are 78 such processes running
[2025-11-26 13:05:49] 2025-11-26 18:05:43,391 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:05:49] 2025-11-26 18:05:43,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:05:49] 2025-11-26 18:05:43,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:05:49] 2025-11-26 18:05:43,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:05:49] 2025-11-26 18:05:43,391 | INFO     | [monitor] control thread has ended
[2025-11-26 13:05:49] 2025-11-26 18:05:47,470 | INFO     | all workflow threads have been joined
[2025-11-26 13:05:49] 2025-11-26 18:05:47,529 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:05:49] 2025-11-26 18:05:47,529 | INFO     | traces error code: 0
[2025-11-26 13:05:49] 2025-11-26 18:05:47,529 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:05:49] 2025-11-26 18:05:48,480 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:05:49] 2025-11-26 18:05:48,496 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:05:49] 2025-11-26 18:05:48,513 [wrapper] pilotpid: 1304183
[2025-11-26 13:05:49] 2025-11-26 18:05:48,529 [wrapper] Pilot exit status: 0
[2025-11-26 13:05:49] 2025-11-26 18:05:48,678 [wrapper] pandaids: 6896556878
[2025-11-26 13:05:49] 2025-11-26 18:05:49,026 [wrapper] cleanup supervisor_pilot 3613281 1304184
[2025-11-26 13:05:49] 2025-11-26 18:05:49,038 [wrapper] Test setup, not cleaning
[2025-11-26 13:05:49] 2025-11-26 18:05:49,058 [wrapper] apfmon messages muted
[2025-11-26 13:05:49] 2025-11-26 18:05:49,068 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:05:49] 2025-11-26 18:05:49,071 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:05:49]  *** Error codes and diagnostics ***
[2025-11-26 13:05:49]     "exeErrorCode": 0,
[2025-11-26 13:05:49]     "exeErrorDiag": "",
[2025-11-26 13:05:49]     "pilotErrorCode": 0,
[2025-11-26 13:05:49]     "pilotErrorDiag": "",
[2025-11-26 13:05:49]  *** Listing of results directory ***
[2025-11-26 13:05:49] total 1319200
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:38 queuedata.json
[2025-11-26 13:05:49] -rwx------. 1 boincer umatlas     36292 Nov 24 23:40 runpilot2-wrapper.sh
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:05:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:39 run_atlas
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:39 job.xml
[2025-11-26 13:05:49] -rw-r--r--. 2 boincer umatlas 412012881 Nov 25 19:39 EVNT.47483658._002084.pool.root.1
[2025-11-26 13:05:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:39 start_atlas.sh
[2025-11-26 13:05:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:39 shared
[2025-11-26 13:05:49] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 19:39 input.tar.gz
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:39 boinc_lockfile
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas      2780 Nov 25 19:39 pandaJob.out
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas        57 Nov 25 19:39 setup.sh.local
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas    991877 Nov 25 19:40 agis_schedconf.cvmfs.json
[2025-11-26 13:05:49] drwx------. 5 boincer umatlas      4096 Nov 25 19:40 pilot3
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas       532 Nov 26 12:50 boinc_task_state.xml
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas      6840 Nov 26 13:00 init_data.xml
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas 916737051 Nov 26 13:03 HITS.47556161._000671.pool.root.1
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas      1058 Nov 26 13:04 memory_monitor_summary.json
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas   1516240 Nov 26 13:04 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas   2099696 Nov 26 13:04 log.47556161._000671.job.log.tgz.1
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas      8607 Nov 26 13:05 heartbeat.json
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas        95 Nov 26 13:05 pilot_heartbeat.json
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 13:05 boinc_mmap_file
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas      4824 Nov 26 13:05 pilotlog.txt
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas        29 Nov 26 13:05 wrapper_checkpoint.txt
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas   6992218 Nov 26 13:05 log.47556161._000671.job.log.1
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas       353 Nov 26 13:05 output.list
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas       620 Nov 26 13:05 runtime_log
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas   9113600 Nov 26 13:05 result.tar.gz
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas       657 Nov 26 13:05 zcsKDml1zh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfKJKDmJJikfn.diag
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas      9328 Nov 26 13:05 runtime_log.err
[2025-11-26 13:05:49] -rw-r--r--. 1 boincer umatlas     21273 Nov 26 13:05 stderr.txt
[2025-11-26 13:05:49] HITS file was successfully produced:
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas 916737051 Nov 26 13:03 shared/HITS.pool.root.1
[2025-11-26 13:05:49]  *** Contents of shared directory: ***
[2025-11-26 13:05:49] total 1307116
[2025-11-26 13:05:49] -rw-r--r--. 2 boincer umatlas 412012881 Nov 25 19:39 ATLAS.root_0
[2025-11-26 13:05:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:39 start_atlas.sh
[2025-11-26 13:05:49] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 19:39 input.tar.gz
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas 916737051 Nov 26 13:03 HITS.pool.root.1
[2025-11-26 13:05:49] -rw-------. 1 boincer umatlas   9113600 Nov 26 13:05 result.tar.gz
13:05:51 (1297137): run_atlas exited; CPU time 275022.701747
13:05:51 (1297137): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN