Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:57:13 (2310254): wrapper (7.7.26015): starting
00:57:13 (2310254): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 00:57:13] Arguments: --nthreads 3
[2025-11-26 00:57:13] Threads: 3
[2025-11-26 00:57:13] Checking for CVMFS
[2025-11-26 00:57:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:57:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:57:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:57:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:57:14] 2.9.2.0 2184780 26 53544 153302 1 88 35457864 36864000 0 130560 0 375632 100.000 4 58 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 00:57:14] CVMFS is ok
[2025-11-26 00:57:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:57:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:57:14] Further information can be found at the LHC@home message board.
[2025-11-26 00:57:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:57:14] Checking for apptainer binary...
[2025-11-26 00:57:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:57:14] Running /usr/bin/apptainer --version
[2025-11-26 00:57:14] apptainer version 1.4.1-1.1
[2025-11-26 00:57:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:57:14] thA335
[2025-11-26 00:57:14] apptainer works
[2025-11-26 00:57:14] Set ATHENA_PROC_NUMBER=3
[2025-11-26 00:57:14] Set ATHENA_CORE_NUMBER=3
[2025-11-26 00:57:14] Starting ATLAS job with PandaID=6895816683
[2025-11-26 00:57:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 01:01:31]  *** The last 200 lines of the pilot log: ***
[2025-11-26 01:01:31] 2025-11-26 00:00:42,621 | INFO     | update_server=False
[2025-11-26 01:01:31] 2025-11-26 00:00:42,621 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 01:01:31] 2025-11-26 00:00:42,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 01:01:31] 2025-11-26 00:00:42,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:01:31] 2025-11-26 00:00:42,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:01:31] 2025-11-26 00:00:42,995 | INFO     | aborting loop
[2025-11-26 01:01:31] 2025-11-26 00:00:43,000 | INFO     | all data control threads have been joined
[2025-11-26 01:01:31] 2025-11-26 00:00:43,028 | INFO     | all payload control threads have been joined
[2025-11-26 01:01:31] 2025-11-26 00:00:43,627 | INFO     | [job] retrieve thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:43,628 | INFO     | [job] queue monitor thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:43,799 | INFO     | [payload] validate_post thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:43,846 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:43,851 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 01:01:31] 2025-11-26 00:00:43,956 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:43,963 | INFO     | all job control threads have been joined
[2025-11-26 01:01:31] 2025-11-26 00:00:43,980 | INFO     | [job] validate thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:44,001 | INFO     | [job] job monitor thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:44,006 | INFO     | [data] control thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:44,034 | INFO     | [payload] control thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:44,040 | INFO     | [data] copytool_in thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:44,062 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:44,111 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:44,527 | INFO     | [payload] failed_post thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:44,969 | INFO     | [job] control thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:45,857 | INFO     | [data] copytool_out thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:00:46,628 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 01:01:31] 2025-11-26 00:01:13,137 | INFO     | PID=2313989 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 01:01:31] 2025-11-26 00:01:13,137 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 01:01:31] 2025-11-26 00:01:13,137 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 01:01:31] 2025-11-26 00:01:13,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 01:01:31] 2025-11-26 00:01:24,344 | INFO     | [monitor] cgroup control has ended
[2025-11-26 01:01:31] 2025-11-26 00:01:25,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140658472707904)>', '<ExcThread(monitor, started 140657754629888)>']
[2025-11-26 01:01:31] 2025-11-26 00:01:26,207 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 01:01:31] 2025-11-26 00:01:26,207 | INFO     | [monitor] control thread has ended
[2025-11-26 01:01:31] 2025-11-26 00:01:30,912 | INFO     | all workflow threads have been joined
[2025-11-26 01:01:31] 2025-11-26 00:01:30,913 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 01:01:31] 2025-11-26 00:01:30,913 | INFO     | traces error code: 0
[2025-11-26 01:01:31] 2025-11-26 00:01:30,914 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 01:01:31] 2025-11-26 00:01:30,992 [wrapper] ==== pilot stdout END ====
[2025-11-26 01:01:31] 2025-11-26 00:01:30,996 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 01:01:31] 2025-11-26 00:01:30,999 [wrapper] pilotpid: 2313989
[2025-11-26 01:01:31] 2025-11-26 00:01:31,002 [wrapper] Pilot exit status: 0
[2025-11-26 01:01:31] 2025-11-26 00:01:31,009 [wrapper] pandaids: 6895816683
[2025-11-26 01:01:31] 2025-11-26 00:01:31,026 [wrapper] cleanup supervisor_pilot 2313995 2313990
[2025-11-26 01:01:31] 2025-11-26 00:01:31,029 [wrapper] Test setup, not cleaning
[2025-11-26 01:01:31] 2025-11-26 00:01:31,031 [wrapper] apfmon messages muted
[2025-11-26 01:01:31] 2025-11-26 00:01:31,034 [wrapper] ==== wrapper stdout END ====
[2025-11-26 01:01:31] 2025-11-26 00:01:31,036 [wrapper] ==== wrapper stderr END ====
[2025-11-26 01:01:31]  *** Error codes and diagnostics ***
[2025-11-26 01:01:31]     "exeErrorCode": 65,
[2025-11-26 01:01:31]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 01:01:31]     "pilotErrorCode": 1305,
[2025-11-26 01:01:31]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 01:01:31]  *** Listing of results directory ***
[2025-11-26 01:01:31] total 402200
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc    576529 Nov 24 16:13 pilot3.tar.gz
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc      5112 Nov 24 16:57 queuedata.json
[2025-11-26 01:01:31] -rwx------ 1 boinc boinc     36292 Nov 24 17:00 runpilot2-wrapper.sh
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc       100 Nov 26 00:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 01:01:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 00:57 run_atlas
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc       105 Nov 26 00:57 job.xml
[2025-11-26 01:01:31] -rw-r--r-- 2 boinc boinc 407668464 Nov 26 00:57 EVNT.47483658._002052.pool.root.1
[2025-11-26 01:01:31] -rw-r--r-- 2 boinc boinc    590098 Nov 26 00:57 input.tar.gz
[2025-11-26 01:01:31] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:57 start_atlas.sh
[2025-11-26 01:01:31] drwxrwx--x 2 boinc boinc      4096 Nov 26 00:57 shared
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:57 boinc_setup_complete
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc      6196 Nov 26 00:57 init_data.xml
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:57 boinc_lockfile
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc      2782 Nov 26 00:57 pandaJob.out
[2025-11-26 01:01:31] -rw------- 1 boinc boinc    991877 Nov 26 00:57 agis_schedconf.cvmfs.json
[2025-11-26 01:01:31] -rw------- 1 boinc boinc   1516240 Nov 26 00:57 agis_ddmendpoints.agis.ALL.json
[2025-11-26 01:01:31] drwx------ 5 boinc boinc      4096 Nov 26 00:57 pilot3
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc       522 Nov 26 00:58 boinc_task_state.xml
[2025-11-26 01:01:31] -rw------- 1 boinc boinc       961 Nov 26 00:58 memory_monitor_summary.json
[2025-11-26 01:01:31] -rw------- 1 boinc boinc     54385 Nov 26 00:58 log.47556161._000351.job.log.tgz.1
[2025-11-26 01:01:31] -rw------- 1 boinc boinc        95 Nov 26 01:00 pilot_heartbeat.json
[2025-11-26 01:01:31] -rw------- 1 boinc boinc      8374 Nov 26 01:00 heartbeat.json
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc      8192 Nov 26 01:01 boinc_mmap_file
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc        22 Nov 26 01:01 wrapper_checkpoint.txt
[2025-11-26 01:01:31] -rw------- 1 boinc boinc      4752 Nov 26 01:01 pilotlog.txt
[2025-11-26 01:01:31] -rw------- 1 boinc boinc     93844 Nov 26 01:01 log.47556161._000351.job.log.1
[2025-11-26 01:01:31] -rw------- 1 boinc boinc       186 Nov 26 01:01 output.list
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc       620 Nov 26 01:01 runtime_log
[2025-11-26 01:01:31] -rw------- 1 boinc boinc    163840 Nov 26 01:01 result.tar.gz
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc      8744 Nov 26 01:01 runtime_log.err
[2025-11-26 01:01:31] -rw------- 1 boinc boinc       649 Nov 26 01:01 lPUMDm89nh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNkLKDmEPR30m.diag
[2025-11-26 01:01:31] -rw-r--r-- 1 boinc boinc      7782 Nov 26 01:01 stderr.txt
[2025-11-26 01:01:31] No HITS result produced
[2025-11-26 01:01:31]  *** Contents of shared directory: ***
[2025-11-26 01:01:31] total 398876
[2025-11-26 01:01:31] -rw-r--r-- 2 boinc boinc 407668464 Nov 26 00:57 ATLAS.root_0
[2025-11-26 01:01:31] -rw-r--r-- 2 boinc boinc    590098 Nov 26 00:57 input.tar.gz
[2025-11-26 01:01:31] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:57 start_atlas.sh
[2025-11-26 01:01:31] -rw------- 1 boinc boinc    163840 Nov 26 01:01 result.tar.gz
01:01:32 (2310254): run_atlas exited; CPU time 31.336453
01:01:32 (2310254): called boinc_finish(0)

</stderr_txt>
]]>

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