Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:12:23 (1504395): wrapper (7.7.26015): starting
19:12:23 (1504395): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 19:12:23] Arguments: --nthreads 9
[2025-11-25 19:12:23] Threads: 9
[2025-11-25 19:12:23] Checking for CVMFS
[2025-11-25 19:12:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:12:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:12:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:12:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:12:26] 2.13.3.0 9239 29267 358404 153302 3 726 18996139 32935937 21762 16776704 0 107985356 99.517 128556222 38047 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:12:26] CVMFS is ok
[2025-11-25 19:12:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:12:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:12:26] Further information can be found at the LHC@home message board.
[2025-11-25 19:12:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:12:26] Checking for apptainer binary...
[2025-11-25 19:12:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:12:26] Running /usr/bin/apptainer --version
[2025-11-25 19:12:26] apptainer version 1.4.4-1.el9
[2025-11-25 19:12:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:12:26] c6-6-39-3.aglt2.org
[2025-11-25 19:12:26] apptainer works
[2025-11-25 19:12:26] Set ATHENA_PROC_NUMBER=9
[2025-11-25 19:12:26] Set ATHENA_CORE_NUMBER=9
[2025-11-25 19:12:26] Starting ATLAS job with PandaID=6895881920
[2025-11-25 19:12:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:00:05 (1504395): BOINC client no longer exists - exiting
23:00:05 (1504395): timer handler: client dead, exiting
23:11:15 (2532244): wrapper (7.7.26015): starting
23:11:15 (2532244): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 23:11:15] Arguments: --nthreads 9
[2025-11-25 23:11:15] Threads: 9
[2025-11-25 23:11:15] This job has been restarted, cleaning up previous attempt
[2025-11-25 23:11:15] Checking for CVMFS
[2025-11-25 23:11:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:11:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:11:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:11:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:11:16] 2.13.3.0 9239 29506 345524 153307 1 395 24873954 32935937 16804 16776704 0 109305721 99.516 130227115 37951 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 23:11:16] CVMFS is ok
[2025-11-25 23:11:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:11:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:11:16] Further information can be found at the LHC@home message board.
[2025-11-25 23:11:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:11:16] Checking for apptainer binary...
[2025-11-25 23:11:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:11:16] Running /usr/bin/apptainer --version
[2025-11-25 23:11:16] apptainer version 1.4.4-1.el9
[2025-11-25 23:11:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:11:16] c6-6-39-3.aglt2.org
[2025-11-25 23:11:16] apptainer works
[2025-11-25 23:11:16] Set ATHENA_PROC_NUMBER=9
[2025-11-25 23:11:16] Set ATHENA_CORE_NUMBER=9
[2025-11-25 23:11:16] Starting ATLAS job with PandaID=6895881920
[2025-11-25 23:11:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:13:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:13:32] 2025-11-26 22:12:58,073 | INFO     | monitor loop #3882: job 0:6895881920 is in state 'finished'
[2025-11-26 17:13:32] 2025-11-26 22:12:58,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:13:32] 2025-11-26 22:12:58,664 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 17:13:32] 2025-11-26 22:12:58,676 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2969.284107142857
[2025-11-26 17:13:32] 2025-11-26 22:12:58,688 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895881920/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:13:32] 2025-11-26 22:12:58,688 | INFO     | extracted standard info from prmon json
[2025-11-26 17:13:32] 2025-11-26 22:12:58,689 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:13:32] 2025-11-26 22:12:58,689 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:13:32] 2025-11-26 22:12:58,708 | INFO     | fitting pss+swap vs Time
[2025-11-26 17:13:32] 2025-11-26 22:12:58,710 | INFO     | sum of square deviations: 373540827082.628
[2025-11-26 17:13:32] 2025-11-26 22:12:58,739 | INFO     | sum of deviations: 2733444110084.74
[2025-11-26 17:13:32] 2025-11-26 22:12:58,740 | INFO     | mean x: 1764162735.3176692
[2025-11-26 17:13:32] 2025-11-26 22:12:58,740 | INFO     | mean y: 3056564.9445488723
[2025-11-26 17:13:32] 2025-11-26 22:12:58,740 | INFO     | intersect: -12906483406.220043
[2025-11-26 17:13:32] 2025-11-26 22:12:58,742 | INFO     | chi2: 6.080447213762264
[2025-11-26 17:13:32] 2025-11-26 22:12:58,744 | INFO     | sum of square deviations: 368300787352.7445
[2025-11-26 17:13:32] 2025-11-26 22:12:58,754 | INFO     | time since job start (64893s) is within the limit (172800.0s)
[2025-11-26 17:13:32] 2025-11-26 22:12:58,766 | INFO     | sum of deviations: 3139926584613.3403
[2025-11-26 17:13:32] 2025-11-26 22:12:58,767 | INFO     | mean x: 1764162582.8309727
[2025-11-26 17:13:32] 2025-11-26 22:12:58,767 | INFO     | mean y: 3068394.001888574
[2025-11-26 17:13:32] 2025-11-26 22:12:58,767 | INFO     | intersect: -15037195389.376165
[2025-11-26 17:13:32] 2025-11-26 22:12:58,768 | INFO     | chi2: 2.512182102708121
[2025-11-26 17:13:32] 2025-11-26 22:12:58,768 | INFO     | current chi2=2.512182102708121 (change=58.684254391319456 %)
[2025-11-26 17:13:32] 2025-11-26 22:12:58,770 | INFO     | sum of square deviations: 363108908234.4173
[2025-11-26 17:13:32] 2025-11-26 22:12:58,794 | INFO     | sum of deviations: 3248890774487.019
[2025-11-26 17:13:32] 2025-11-26 22:12:58,795 | INFO     | mean x: 1764162430.3282733
[2025-11-26 17:13:32] 2025-11-26 22:12:58,795 | INFO     | mean y: 3071589.5664136624
[2025-11-26 17:13:32] 2025-11-26 22:12:58,795 | INFO     | intersect: -15781644550.996887
[2025-11-26 17:13:32] 2025-11-26 22:12:58,796 | INFO     | chi2: 2.015882926802794
[2025-11-26 17:13:32] 2025-11-26 22:12:58,796 | INFO     | current chi2=2.015882926802794 (change=19.755700646474576 %)
[2025-11-26 17:13:32] 2025-11-26 22:12:58,796 | INFO     | right removable region: 1053
[2025-11-26 17:13:32] 2025-11-26 22:12:58,798 | INFO     | sum of square deviations: 368299088024.0638
[2025-11-26 17:13:32] 2025-11-26 22:12:58,819 | INFO     | sum of deviations: 2460828591976.092
[2025-11-26 17:13:32] 2025-11-26 22:12:58,819 | INFO     | mean x: 1764162887.8290842
[2025-11-26 17:13:32] 2025-11-26 22:12:58,819 | INFO     | mean y: 3064485.613786591
[2025-11-26 17:13:32] 2025-11-26 22:12:58,819 | INFO     | intersect: -11784372997.77545
[2025-11-26 17:13:32] 2025-11-26 22:12:58,820 | INFO     | chi2: 4.263583895897327
[2025-11-26 17:13:32] 2025-11-26 22:12:58,821 | INFO     | current chi2=4.263583895897327 (change=29.880422508277267 %)
[2025-11-26 17:13:32] 2025-11-26 22:12:58,822 | INFO     | sum of square deviations: 363106735154.0803
[2025-11-26 17:13:32] 2025-11-26 22:12:58,843 | INFO     | sum of deviations: 2369441309619.646
[2025-11-26 17:13:32] 2025-11-26 22:12:58,844 | INFO     | mean x: 1764163040.3387096
[2025-11-26 17:13:32] 2025-11-26 22:12:58,845 | INFO     | mean y: 3067169.356736243
[2025-11-26 17:13:32] 2025-11-26 22:12:58,845 | INFO     | intersect: -11508921951.16717
[2025-11-26 17:13:32] 2025-11-26 22:12:58,846 | INFO     | chi2: 4.19530559269259
[2025-11-26 17:13:32] 2025-11-26 22:12:58,846 | INFO     | current chi2=4.19530559269259 (change=1.6014298034674 %)
[2025-11-26 17:13:32] 2025-11-26 22:12:58,846 | INFO     | left removable region: 20
[2025-11-26 17:13:32] 2025-11-26 22:12:58,847 | INFO     | sum of square deviations: 341834238862.4804
[2025-11-26 17:13:32] 2025-11-26 22:12:58,863 | INFO     | sum of deviations: 2736828450050.542
[2025-11-26 17:13:32] 2025-11-26 22:12:58,864 | INFO     | mean x: 1764163009.8625362
[2025-11-26 17:13:32] 2025-11-26 22:12:58,864 | INFO     | mean y: 3086425.158760891
[2025-11-26 17:13:32] 2025-11-26 22:12:58,864 | INFO     | intersect: -14121336956.142633
[2025-11-26 17:13:32] 2025-11-26 22:12:58,865 | INFO     | chi2: 0.07065462951265378
[2025-11-26 17:13:32] 2025-11-26 22:12:58,865 | INFO     | current memory leak: 8.01 B/s (using 1033 data points, chi2=0.07)
[2025-11-26 17:13:32] 2025-11-26 22:12:58,866 | INFO     | could have reported an average CPU frequency of 2937 MHz (39 samples)
[2025-11-26 17:13:32] 2025-11-26 22:12:58,866 | INFO     | ..............................
[2025-11-26 17:13:32] 2025-11-26 22:12:58,866 | INFO     | . Timing measurements:
[2025-11-26 17:13:32] 2025-11-26 22:12:58,867 | INFO     | . get job = 0 s
[2025-11-26 17:13:32] 2025-11-26 22:12:58,867 | INFO     | . initial setup = 2 s
[2025-11-26 17:13:32] 2025-11-26 22:12:58,867 | INFO     | . payload setup = 5 s
[2025-11-26 17:13:32] 2025-11-26 22:12:58,867 | INFO     | . stage-in = 0 s
[2025-11-26 17:13:32] 2025-11-26 22:12:58,867 | INFO     | . payload execution = 64855 s
[2025-11-26 17:13:32] 2025-11-26 22:12:58,867 | INFO     | . stage-out = 3 s
[2025-11-26 17:13:32] 2025-11-26 22:12:58,867 | INFO     | . log creation = 0 s
[2025-11-26 17:13:32] 2025-11-26 22:12:58,867 | INFO     | ..............................
[2025-11-26 17:13:32] 2025-11-26 22:12:59,446 | INFO     | 
[2025-11-26 17:13:32] 2025-11-26 22:12:59,446 | INFO     | job summary report
[2025-11-26 17:13:32] 2025-11-26 22:12:59,446 | INFO     | --------------------------------------------------
[2025-11-26 17:13:32] 2025-11-26 22:12:59,446 | INFO     | PanDA job id: 6895881920
[2025-11-26 17:13:32] 2025-11-26 22:12:59,446 | INFO     | task id: 47556149
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | errors: (none)
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | pilot state: finished 
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | transexitcode: 0
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | exeerrorcode: 0
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | exeerrordiag: 
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | exitcode: 0
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | exitmsg: OK
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | cpuconsumptiontime: 243017 s
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | nevents: 1000
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | neventsw: 0
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | pid: 2573518
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | pgrp: 2573518
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | corecount: 9
[2025-11-26 17:13:32] 2025-11-26 22:12:59,447 | INFO     | event service: False
[2025-11-26 17:13:32] 2025-11-26 22:12:59,448 | INFO     | sizes: {0: 2284315, 4: 2284577, 11: 2284605, 64865: 2339351, 64870: 2348429, 64879: 2348619}
[2025-11-26 17:13:32] 2025-11-26 22:12:59,448 | INFO     | --------------------------------------------------
[2025-11-26 17:13:32] 2025-11-26 22:12:59,448 | INFO     | 
[2025-11-26 17:13:32] 2025-11-26 22:12:59,448 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 17:13:32] 2025-11-26 22:12:59,470 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,471 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,471 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,471 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,472 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,472 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,472 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,472 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,472 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,472 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,472 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,473 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,473 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,473 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,473 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,473 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,473 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,473 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:13:32] 2025-11-26 22:12:59,473 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,473 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:13:32] 2025-11-26 22:12:59,474 | INFO     | job 6895881920 has completed (purged errors)
[2025-11-26 17:13:32] 2025-11-26 22:12:59,474 | INFO     | overall cleanup function is called
[2025-11-26 17:13:32] 2025-11-26 22:13:00,496 | INFO     | --- collectZombieJob: --- 10, [2573518]
[2025-11-26 17:13:32] 2025-11-26 22:13:00,496 | INFO     | zombie collector waiting for pid 2573518
[2025-11-26 17:13:32] 2025-11-26 22:13:00,496 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:13:32] 2025-11-26 22:13:00,497 | INFO     | collected zombie processes
[2025-11-26 17:13:32] 2025-11-26 22:13:00,497 | INFO     | will attempt to kill all subprocesses of pid=2573518
[2025-11-26 17:13:32] 2025-11-26 22:13:00,908 | INFO     | process IDs to be killed: [2573518] (in reverse order)
[2025-11-26 17:13:32] 2025-11-26 22:13:01,069 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:13:32] 2025-11-26 22:13:01,069 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:13:32] 2025-11-26 22:13:01,092 | INFO     | did not find any defunct processes belonging to 2573518
[2025-11-26 17:13:32] 2025-11-26 22:13:01,107 | INFO     | did not find any defunct processes belonging to 2573518
[2025-11-26 17:13:32] 2025-11-26 22:13:01,108 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:13:32] 2025-11-26 22:13:01,108 | INFO     | ready for new job
[2025-11-26 17:13:32] 2025-11-26 22:13:01,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:13:32] 2025-11-26 22:13:01,113 | INFO     | ***************************************
[2025-11-26 17:13:32] 2025-11-26 22:13:01,114 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:13:32] 2025-11-26 22:13:01,114 | INFO     | ***************************************
[2025-11-26 17:13:32] 2025-11-26 22:13:01,114 | INFO     | 
[2025-11-26 17:13:32] 2025-11-26 22:13:01,117 | INFO     | architecture information:
[2025-11-26 17:13:32] 2025-11-26 22:13:01,118 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:13:32] 2025-11-26 22:13:01,142 | INFO     | cat /etc/os-release:
[2025-11-26 17:13:32] NAME="CentOS Linux"
[2025-11-26 17:13:32] VERSION="7 (Core)"
[2025-11-26 17:13:32] ID="centos"
[2025-11-26 17:13:32] ID_LIKE="rhel fedora"
[2025-11-26 17:13:32] VERSION_ID="7"
[2025-11-26 17:13:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:13:32] ANSI_COLOR="0;31"
[2025-11-26 17:13:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:13:32] HOME_URL="https://www.centos.org/"
[2025-11-26 17:13:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:13:32] 
[2025-11-26 17:13:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:13:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:13:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:13:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:13:32] 
[2025-11-26 17:13:32] 2025-11-26 22:13:01,143 | INFO     | ***************************************
[2025-11-26 17:13:32] 2025-11-26 22:13:01,645 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 17:13:32] 2025-11-26 22:13:01,664 | INFO     | sufficient remaining disk space (66434629632 B)
[2025-11-26 17:13:32] 2025-11-26 22:13:01,664 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:13:32] 2025-11-26 22:13:01,665 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:13:32] 2025-11-26 22:13:01,665 | INFO     | update_server=False
[2025-11-26 17:13:32] 2025-11-26 22:13:01,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:13:32] 2025-11-26 22:13:01,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:13:32] 2025-11-26 22:13:01,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:13:32] 2025-11-26 22:13:01,666 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:13:32] 2025-11-26 22:13:01,666 | INFO     | aborting loop
[2025-11-26 17:13:32] 2025-11-26 22:13:01,777 | INFO     | all data control threads have been joined
[2025-11-26 17:13:32] 2025-11-26 22:13:02,206 | INFO     | all payload control threads have been joined
[2025-11-26 17:13:32] 2025-11-26 22:13:02,671 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:02,677 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:02,783 | INFO     | [data] control thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:02,871 | INFO     | [job] validate thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:02,959 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:03,047 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:03,082 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:03,211 | INFO     | [payload] control thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:03,321 | INFO     | all job control threads have been joined
[2025-11-26 17:13:32] 2025-11-26 22:13:03,539 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:03,684 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:03,690 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:03,869 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:03,978 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:13:32] 2025-11-26 22:13:04,181 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:04,327 | INFO     | [job] control thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:04,986 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:05,679 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:13:32] 2025-11-26 22:13:20,761 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:13:32] 2025-11-26 22:13:21,638 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139803960084288)>', '<ExcThread(monitor, started 139803181963008)>']
[2025-11-26 17:13:32] 2025-11-26 22:13:26,663 | INFO     | all workflow threads have been joined
[2025-11-26 17:13:32] 2025-11-26 22:13:26,663 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:13:32] 2025-11-26 22:13:26,664 | INFO     | traces error code: 0
[2025-11-26 17:13:32] 2025-11-26 22:13:26,664 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:13:32] 2025-11-26 22:13:32,336 | INFO     | PID=2547324 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 17:13:32] 2025-11-26 22:13:32,336 | INFO     | .. there are 33 such processes running
[2025-11-26 17:13:32] 2025-11-26 22:13:32,337 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:13:32] 2025-11-26 22:13:32,337 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:13:32] 2025-11-26 22:13:32,337 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:13:32] 2025-11-26 22:13:32,337 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:13:32] 2025-11-26 22:13:32,337 | INFO     | [monitor] control thread has ended
[2025-11-26 17:13:32] 2025-11-26 22:13:32,505 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:13:32] 2025-11-26 22:13:32,509 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:13:32] 2025-11-26 22:13:32,514 [wrapper] pilotpid: 2547324
[2025-11-26 17:13:32] 2025-11-26 22:13:32,518 [wrapper] Pilot exit status: 0
[2025-11-26 17:13:32] 2025-11-26 22:13:32,588 [wrapper] pandaids: 6895881920 6895881920
[2025-11-26 17:13:32] 2025-11-26 22:13:32,665 [wrapper] cleanup supervisor_pilot 2175943 2547326
[2025-11-26 17:13:32] 2025-11-26 22:13:32,669 [wrapper] Test setup, not cleaning
[2025-11-26 17:13:32] 2025-11-26 22:13:32,686 [wrapper] apfmon messages muted
[2025-11-26 17:13:32] 2025-11-26 22:13:32,691 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:13:32] 2025-11-26 22:13:32,694 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:13:32]  *** Error codes and diagnostics ***
[2025-11-26 17:13:32]     "exeErrorCode": 0,
[2025-11-26 17:13:32]     "exeErrorDiag": "",
[2025-11-26 17:13:32]     "pilotErrorCode": 0,
[2025-11-26 17:13:32]     "pilotErrorDiag": "",
[2025-11-26 17:13:32]  *** Listing of results directory ***
[2025-11-26 17:13:32] total 1722928
[2025-11-26 17:13:32] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 11:06 queuedata.json
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-26 17:13:32] -rwx------. 1 boincer umatlas     36292 Nov 24 11:09 runpilot2-wrapper.sh
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:13:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:12 run_atlas
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:12 job.xml
[2025-11-26 17:13:32] -rw-r--r--. 3 boincer umatlas 407750284 Nov 25 19:12 EVNT.47483658._001377.pool.root.1
[2025-11-26 17:13:32] -rw-r--r--. 3 boincer umatlas 407750284 Nov 25 19:12 ATLAS.root_0
[2025-11-26 17:13:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:12 shared
[2025-11-26 17:13:32] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 19:12 input.tar.gz
[2025-11-26 17:13:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:12 start_atlas.sh
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:12 boinc_lockfile
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 23:11 pandaJob.out
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas        57 Nov 25 23:11 setup.sh.local
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas    991877 Nov 25 23:11 agis_schedconf.cvmfs.json
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas       533 Nov 26 17:02 boinc_task_state.xml
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 17:11 init_data.xml
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas 923861268 Nov 26 17:12 HITS.47556149._003636.pool.root.1
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas      1058 Nov 26 17:12 memory_monitor_summary.json
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas   1516240 Nov 26 17:12 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas   2287237 Nov 26 17:12 log.47556149._003636.job.log.tgz.1
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas        96 Nov 26 17:12 pilot_heartbeat.json
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas      8615 Nov 26 17:12 heartbeat.json
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 17:13 boinc_mmap_file
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas        29 Nov 26 17:13 wrapper_checkpoint.txt
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas       823 Nov 26 17:13 pilotlog.txt
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas   8210033 Nov 26 17:13 log.47556149._003636.job.log.1
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas       353 Nov 26 17:13 output.list
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas       620 Nov 26 17:13 runtime_log
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas  10516480 Nov 26 17:13 result.tar.gz
[2025-11-26 17:13:32] -rw-------. 1 boincer umatlas       786 Nov 26 17:13 VOiKDmAJoh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmv6IKDm1FHfJn.diag
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas      9433 Nov 26 17:13 runtime_log.err
[2025-11-26 17:13:32] -rw-r--r--. 1 boincer umatlas     23589 Nov 26 17:13 stderr.txt
[2025-11-26 17:13:32] HITS file was successfully produced:
[2025-11-26 17:13:33] -rw-------. 1 boincer umatlas 923861268 Nov 26 17:12 shared/HITS.pool.root.1
[2025-11-26 17:13:33]  *** Contents of shared directory: ***
[2025-11-26 17:13:33] total 1311280
[2025-11-26 17:13:33] -rw-r--r--. 3 boincer umatlas 407750284 Nov 25 19:12 ATLAS.root_0
[2025-11-26 17:13:33] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 19:12 input.tar.gz
[2025-11-26 17:13:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:12 start_atlas.sh
[2025-11-26 17:13:33] -rw-------. 1 boincer umatlas 923861268 Nov 26 17:12 HITS.pool.root.1
[2025-11-26 17:13:33] -rw-------. 1 boincer umatlas  10516480 Nov 26 17:13 result.tar.gz
17:13:34 (2532244): run_atlas exited; CPU time 244598.040541
17:13:34 (2532244): called boinc_finish(0)

</stderr_txt>
]]>

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