Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:37 (1104095): wrapper (7.7.26015): starting
00:01:37 (1104095): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:37] Arguments: --nthreads 9
[2025-11-26 00:01:37] Threads: 9
[2025-11-26 00:01:37] Checking for CVMFS
[2025-11-26 00:01:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:38] 2.13.2.0 7301 36109 240548 153309 0 263 26696656 40960000 27972 16776704 0 229680391 99.676 201037616 35317 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:01:38] CVMFS is ok
[2025-11-26 00:01:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:38] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:38] Checking for apptainer binary...
[2025-11-26 00:01:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:38] Running /usr/bin/apptainer --version
[2025-11-26 00:01:38] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:39] c-212-17.aglt2.org
[2025-11-26 00:01:39] apptainer works
[2025-11-26 00:01:39] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:39] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:39] Starting ATLAS job with PandaID=6895384711
[2025-11-26 00:01:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:06:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:06:01] 2025-11-27 16:04:48,871 | INFO     | monitor loop #7188: job 0:6895384711 is in state 'finished'
[2025-11-27 11:06:01] 2025-11-27 16:04:48,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:06:01] 2025-11-27 16:04:49,374 | INFO     | PID=1111701 has CPU usage=15.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 11:06:01] 2025-11-27 16:04:49,374 | INFO     | .. there are 37 such processes running
[2025-11-27 11:06:01] 2025-11-27 16:04:50,375 | INFO     | time since job start (126164s) is within the limit (172800.0s)
[2025-11-27 11:06:01] 2025-11-27 16:04:51,376 | INFO     | monitor loop #7189: job 0:6895384711 is in state 'finished'
[2025-11-27 11:06:01] 2025-11-27 16:04:51,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:06:01] 2025-11-27 16:04:52,384 | INFO     | time since job start (126166s) is within the limit (172800.0s)
[2025-11-27 11:06:01] 2025-11-27 16:04:53,882 | INFO     | monitor loop #7190: job 0:6895384711 is in state 'finished'
[2025-11-27 11:06:01] 2025-11-27 16:04:53,882 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:06:01] 2025-11-27 16:04:54,390 | INFO     | time since job start (126168s) is within the limit (172800.0s)
[2025-11-27 11:06:01] 2025-11-27 16:04:56,387 | INFO     | monitor loop #7191: job 0:6895384711 is in state 'finished'
[2025-11-27 11:06:01] 2025-11-27 16:04:56,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:06:01] 2025-11-27 16:04:56,397 | INFO     | time since job start (126170s) is within the limit (172800.0s)
[2025-11-27 11:06:01] 2025-11-27 16:04:57,156 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 11:06:01] 2025-11-27 16:04:57,177 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3172.7089687500006
[2025-11-27 11:06:01] 2025-11-27 16:04:57,208 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895384711/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:06:01] 2025-11-27 16:04:57,209 | INFO     | extracted standard info from prmon json
[2025-11-27 11:06:01] 2025-11-27 16:04:57,209 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:06:01] 2025-11-27 16:04:57,209 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:06:01] 2025-11-27 16:04:57,259 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:06:01] 2025-11-27 16:04:57,265 | INFO     | sum of square deviations: 2742435950886.4443
[2025-11-27 11:06:01] 2025-11-27 16:04:57,421 | INFO     | sum of deviations: 11993653430061.867
[2025-11-27 11:06:01] 2025-11-27 16:04:57,421 | INFO     | mean x: 1764196422.516441
[2025-11-27 11:06:01] 2025-11-27 16:04:57,421 | INFO     | mean y: 3033895.0328820115
[2025-11-27 11:06:01] 2025-11-27 16:04:57,421 | INFO     | intersect: -7712428144.245688
[2025-11-27 11:06:01] 2025-11-27 16:04:57,423 | INFO     | chi2: 19.82895225130179
[2025-11-27 11:06:01] 2025-11-27 16:04:57,430 | INFO     | sum of square deviations: 2722593001326.2603
[2025-11-27 11:06:01] 2025-11-27 16:04:57,636 | INFO     | sum of deviations: 12711158554058.6
[2025-11-27 11:06:01] 2025-11-27 16:04:57,636 | INFO     | mean x: 1764196270.0189044
[2025-11-27 11:06:01] 2025-11-27 16:04:57,636 | INFO     | mean y: 3039408.599612215
[2025-11-27 11:06:01] 2025-11-27 16:04:57,637 | INFO     | intersect: -8233585932.6707
[2025-11-27 11:06:01] 2025-11-27 16:04:57,642 | INFO     | chi2: 16.680132559812623
[2025-11-27 11:06:01] 2025-11-27 16:04:57,642 | INFO     | current chi2=16.680132559812623 (change=15.879909596748579 %)
[2025-11-27 11:06:01] 2025-11-27 16:04:57,642 | INFO     | right removable region: 2062
[2025-11-27 11:06:01] 2025-11-27 16:04:57,644 | INFO     | sum of square deviations: 2722591719106.2646
[2025-11-27 11:06:01] 2025-11-27 16:04:57,874 | INFO     | sum of deviations: 11182276476033.318
[2025-11-27 11:06:01] 2025-11-27 16:04:57,874 | INFO     | mean x: 1764196575.0189044
[2025-11-27 11:06:01] 2025-11-27 16:04:57,874 | INFO     | mean y: 3040130.017935046
[2025-11-27 11:06:01] 2025-11-27 16:04:57,874 | INFO     | intersect: -7242898995.371161
[2025-11-27 11:06:01] 2025-11-27 16:04:57,886 | INFO     | chi2: 16.332327766685008
[2025-11-27 11:06:01] 2025-11-27 16:04:57,886 | INFO     | current chi2=16.332327766685008 (change=17.6339346643352 %)
[2025-11-27 11:06:01] 2025-11-27 16:04:57,886 | INFO     | left removable region: 10
[2025-11-27 11:06:01] 2025-11-27 16:04:57,888 | INFO     | sum of square deviations: 2679273383017.785
[2025-11-27 11:06:01] 2025-11-27 16:04:58,158 | INFO     | sum of deviations: 11347750701032.674
[2025-11-27 11:06:01] 2025-11-27 16:04:58,159 | INFO     | mean x: 1764196544.5243664
[2025-11-27 11:06:01] 2025-11-27 16:04:58,159 | INFO     | mean y: 3052092.936159844
[2025-11-27 11:06:01] 2025-11-27 16:04:58,159 | INFO     | intersect: -7468997120.7714615
[2025-11-27 11:06:01] 2025-11-27 16:04:58,160 | INFO     | chi2: 10.179685567292683
[2025-11-27 11:06:01] 2025-11-27 16:04:58,161 | INFO     | current memory leak: 4.24 B/s (using 2052 data points, chi2=10.18)
[2025-11-27 11:06:01] 2025-11-27 16:04:58,162 | INFO     | could have reported an average CPU frequency of 3208 MHz (73 samples)
[2025-11-27 11:06:01] 2025-11-27 16:04:58,162 | INFO     | ..............................
[2025-11-27 11:06:01] 2025-11-27 16:04:58,162 | INFO     | . Timing measurements:
[2025-11-27 11:06:01] 2025-11-27 16:04:58,162 | INFO     | . get job = 0 s
[2025-11-27 11:06:01] 2025-11-27 16:04:58,162 | INFO     | . initial setup = 4 s
[2025-11-27 11:06:01] 2025-11-27 16:04:58,162 | INFO     | . payload setup = 13 s
[2025-11-27 11:06:01] 2025-11-27 16:04:58,162 | INFO     | . stage-in = 0 s
[2025-11-27 11:06:01] 2025-11-27 16:04:58,162 | INFO     | . payload execution = 126106 s
[2025-11-27 11:06:01] 2025-11-27 16:04:58,162 | INFO     | . stage-out = 6 s
[2025-11-27 11:06:01] 2025-11-27 16:04:58,162 | INFO     | . log creation = 1 s
[2025-11-27 11:06:01] 2025-11-27 16:04:58,162 | INFO     | ..............................
[2025-11-27 11:06:01] 2025-11-27 16:04:58,386 | INFO     | 
[2025-11-27 11:06:01] 2025-11-27 16:04:58,386 | INFO     | job summary report
[2025-11-27 11:06:01] 2025-11-27 16:04:58,390 | INFO     | --------------------------------------------------
[2025-11-27 11:06:01] 2025-11-27 16:04:58,390 | INFO     | PanDA job id: 6895384711
[2025-11-27 11:06:01] 2025-11-27 16:04:58,390 | INFO     | task id: 47556149
[2025-11-27 11:06:01] 2025-11-27 16:04:58,390 | INFO     | errors: (none)
[2025-11-27 11:06:01] 2025-11-27 16:04:58,390 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:06:01] 2025-11-27 16:04:58,390 | INFO     | pilot state: finished 
[2025-11-27 11:06:01] 2025-11-27 16:04:58,390 | INFO     | transexitcode: 0
[2025-11-27 11:06:01] 2025-11-27 16:04:58,390 | INFO     | exeerrorcode: 0
[2025-11-27 11:06:01] 2025-11-27 16:04:58,390 | INFO     | exeerrordiag: 
[2025-11-27 11:06:01] 2025-11-27 16:04:58,390 | INFO     | exitcode: 0
[2025-11-27 11:06:01] 2025-11-27 16:04:58,390 | INFO     | exitmsg: OK
[2025-11-27 11:06:01] 2025-11-27 16:04:58,391 | INFO     | cpuconsumptiontime: 197933 s
[2025-11-27 11:06:01] 2025-11-27 16:04:58,391 | INFO     | nevents: 1000
[2025-11-27 11:06:01] 2025-11-27 16:04:58,391 | INFO     | neventsw: 0
[2025-11-27 11:06:01] 2025-11-27 16:04:58,391 | INFO     | pid: 1131338
[2025-11-27 11:06:01] 2025-11-27 16:04:58,391 | INFO     | pgrp: 1131338
[2025-11-27 11:06:01] 2025-11-27 16:04:58,391 | INFO     | corecount: 9
[2025-11-27 11:06:01] 2025-11-27 16:04:58,391 | INFO     | event service: False
[2025-11-27 11:06:01] 2025-11-27 16:04:58,391 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 10: 2284633, 13: 2284661, 126124: 2366818, 126125: 2366945, 126132: 2376051, 126146: 2376241}
[2025-11-27 11:06:01] 2025-11-27 16:04:58,391 | INFO     | --------------------------------------------------
[2025-11-27 11:06:01] 2025-11-27 16:04:58,391 | INFO     | 
[2025-11-27 11:06:01] 2025-11-27 16:04:58,391 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 11:06:01] 2025-11-27 16:04:58,414 | INFO     | time since job start (126172s) is within the limit (172800.0s)
[2025-11-27 11:06:01] 2025-11-27 16:04:58,472 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,472 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,472 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,472 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,473 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:06:01] 2025-11-27 16:04:58,474 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,474 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:06:01] 2025-11-27 16:04:58,474 | INFO     | job 6895384711 has completed (purged errors)
[2025-11-27 11:06:01] 2025-11-27 16:04:58,474 | INFO     | overall cleanup function is called
[2025-11-27 11:06:01] 2025-11-27 16:04:59,492 | INFO     | --- collectZombieJob: --- 10, [1131338]
[2025-11-27 11:06:01] 2025-11-27 16:04:59,494 | INFO     | zombie collector waiting for pid 1131338
[2025-11-27 11:06:01] 2025-11-27 16:04:59,496 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:06:01] 2025-11-27 16:04:59,497 | INFO     | collected zombie processes
[2025-11-27 11:06:01] 2025-11-27 16:04:59,497 | INFO     | will attempt to kill all subprocesses of pid=1131338
[2025-11-27 11:06:01] 2025-11-27 16:05:00,373 | INFO     | process IDs to be killed: [1131338] (in reverse order)
[2025-11-27 11:06:01] 2025-11-27 16:05:00,637 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:06:01] 2025-11-27 16:05:00,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:06:01] 2025-11-27 16:05:00,668 | INFO     | did not find any defunct processes belonging to 1131338
[2025-11-27 11:06:01] 2025-11-27 16:05:00,688 | INFO     | did not find any defunct processes belonging to 1131338
[2025-11-27 11:06:01] 2025-11-27 16:05:00,690 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:06:01] 2025-11-27 16:05:00,690 | INFO     | ready for new job
[2025-11-27 11:06:01] 2025-11-27 16:05:00,690 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:06:01] 2025-11-27 16:05:00,697 | INFO     | ***************************************
[2025-11-27 11:06:01] 2025-11-27 16:05:00,698 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:06:01] 2025-11-27 16:05:00,698 | INFO     | ***************************************
[2025-11-27 11:06:01] 2025-11-27 16:05:00,698 | INFO     | 
[2025-11-27 11:06:01] 2025-11-27 16:05:00,704 | INFO     | architecture information:
[2025-11-27 11:06:01] 2025-11-27 16:05:00,705 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:06:01] 2025-11-27 16:05:00,754 | INFO     | cat /etc/os-release:
[2025-11-27 11:06:01] NAME="CentOS Linux"
[2025-11-27 11:06:01] VERSION="7 (Core)"
[2025-11-27 11:06:01] ID="centos"
[2025-11-27 11:06:01] ID_LIKE="rhel fedora"
[2025-11-27 11:06:01] VERSION_ID="7"
[2025-11-27 11:06:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:06:01] ANSI_COLOR="0;31"
[2025-11-27 11:06:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:06:01] HOME_URL="https://www.centos.org/"
[2025-11-27 11:06:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:06:01] 
[2025-11-27 11:06:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:06:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:06:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:06:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:06:01] 
[2025-11-27 11:06:01] 2025-11-27 16:05:00,754 | INFO     | ***************************************
[2025-11-27 11:06:01] 2025-11-27 16:05:01,257 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 11:06:01] 2025-11-27 16:05:01,315 | INFO     | sufficient remaining disk space (120496062464 B)
[2025-11-27 11:06:01] 2025-11-27 16:05:01,315 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:06:01] 2025-11-27 16:05:01,315 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:06:01] 2025-11-27 16:05:01,316 | INFO     | update_server=False
[2025-11-27 11:06:01] 2025-11-27 16:05:01,316 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:06:01] 2025-11-27 16:05:01,414 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 11:06:01] 2025-11-27 16:05:01,414 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 11:06:01] 2025-11-27 16:05:01,414 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:06:01] 2025-11-27 16:05:01,414 | INFO     | will abort loop
[2025-11-27 11:06:01] 2025-11-27 16:05:01,715 | INFO     | all payload control threads have been joined
[2025-11-27 11:06:01] 2025-11-27 16:05:01,742 | INFO     | all data control threads have been joined
[2025-11-27 11:06:01] 2025-11-27 16:05:02,175 | INFO     | all job control threads have been joined
[2025-11-27 11:06:01] 2025-11-27 16:05:02,321 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:02,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:06:01] 2025-11-27 16:05:02,420 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:02,659 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:02,694 | INFO     | [job] validate thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:02,721 | INFO     | [payload] control thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:02,761 | INFO     | [data] control thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:02,826 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:02,995 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:03,181 | INFO     | [job] control thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:03,404 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:06:01] 2025-11-27 16:05:03,639 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:03,735 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:03,759 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:03,848 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:03,957 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:06:01] 2025-11-27 16:05:04,410 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:04,426 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:07,970 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:06:01] 2025-11-27 16:05:32,177 | INFO     | PID=1111701 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:06:01] 2025-11-27 16:05:32,177 | INFO     | .. there are 37 such processes running
[2025-11-27 11:06:01] 2025-11-27 16:05:32,177 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:06:01] 2025-11-27 16:05:32,177 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:06:01] 2025-11-27 16:05:32,177 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:06:01] 2025-11-27 16:05:53,634 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:06:01] 2025-11-27 16:05:55,601 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140661878736704)>', '<ExcThread(monitor, started 140661604980480)>']
[2025-11-27 11:06:01] 2025-11-27 16:05:56,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:06:01] 2025-11-27 16:05:56,329 | INFO     | [monitor] control thread has ended
[2025-11-27 11:06:01] 2025-11-27 16:06:00,627 | INFO     | all workflow threads have been joined
[2025-11-27 11:06:01] 2025-11-27 16:06:00,627 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:06:01] 2025-11-27 16:06:00,627 | INFO     | traces error code: 0
[2025-11-27 11:06:01] 2025-11-27 16:06:00,628 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:06:01] 2025-11-27 16:06:00,841 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:06:01] 2025-11-27 16:06:00,844 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:06:01] 2025-11-27 16:06:00,846 [wrapper] pilotpid: 1111701
[2025-11-27 11:06:01] 2025-11-27 16:06:00,848 [wrapper] Pilot exit status: 0
[2025-11-27 11:06:01] 2025-11-27 16:06:00,861 [wrapper] pandaids: 6895384711
[2025-11-27 11:06:01] 2025-11-27 16:06:00,971 [wrapper] cleanup supervisor_pilot  448439 1111702
[2025-11-27 11:06:01] 2025-11-27 16:06:00,973 [wrapper] Test setup, not cleaning
[2025-11-27 11:06:01] 2025-11-27 16:06:00,975 [wrapper] apfmon messages muted
[2025-11-27 11:06:01] 2025-11-27 16:06:00,977 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:06:01] 2025-11-27 16:06:00,979 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:06:01]  *** Error codes and diagnostics ***
[2025-11-27 11:06:01]     "exeErrorCode": 0,
[2025-11-27 11:06:01]     "exeErrorDiag": "",
[2025-11-27 11:06:01]     "pilotErrorCode": 0,
[2025-11-27 11:06:01]     "pilotErrorDiag": "",
[2025-11-27 11:06:01]  *** Listing of results directory ***
[2025-11-27 11:06:01] total 1318492
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-27 11:06:01] -rwx------. 1 boincer umatlas     36292 Nov 24 00:10 runpilot2-wrapper.sh
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:10 queuedata.json
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:06:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-27 11:06:01] -rw-r--r--. 2 boincer umatlas 406708530 Nov 26 00:01 EVNT.47483658._001230.pool.root.1
[2025-11-27 11:06:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 11:06:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-27 11:06:01] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:01 input.tar.gz
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:01 pandaJob.out
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-27 11:06:01] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:41 boinc_task_state.xml
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas      6950 Nov 27 11:03 init_data.xml
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas 902802321 Nov 27 11:03 HITS.47556149._002165.pool.root.1
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas      1076 Nov 27 11:04 memory_monitor_summary.json
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:04 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas   2989147 Nov 27 11:04 log.47556149._002165.job.log.tgz.1
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas        95 Nov 27 11:04 pilot_heartbeat.json
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas      8634 Nov 27 11:04 heartbeat.json
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:05 boinc_mmap_file
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:05 wrapper_checkpoint.txt
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas      5011 Nov 27 11:06 pilotlog.txt
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas  15362577 Nov 27 11:06 log.47556149._002165.job.log.1
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas       353 Nov 27 11:06 output.list
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:06 runtime_log
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas  18370560 Nov 27 11:06 result.tar.gz
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas      9344 Nov 27 11:06 runtime_log.err
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas       669 Nov 27 11:06 rEULDmq1dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNSLKDmtprwUm.diag
[2025-11-27 11:06:01] -rw-r--r--. 1 boincer umatlas     21850 Nov 27 11:06 stderr.txt
[2025-11-27 11:06:01] HITS file was successfully produced:
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas 902802321 Nov 27 11:03 shared/HITS.pool.root.1
[2025-11-27 11:06:01]  *** Contents of shared directory: ***
[2025-11-27 11:06:01] total 1297368
[2025-11-27 11:06:01] -rw-r--r--. 2 boincer umatlas 406708530 Nov 26 00:01 ATLAS.root_0
[2025-11-27 11:06:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 11:06:01] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:01 input.tar.gz
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas 902802321 Nov 27 11:03 HITS.pool.root.1
[2025-11-27 11:06:01] -rw-------. 1 boincer umatlas  18370560 Nov 27 11:06 result.tar.gz
11:06:23 (1104095): run_atlas exited; CPU time 200217.473548
11:06:23 (1104095): called boinc_finish(0)

</stderr_txt>
]]>

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