Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:04:42 (1116292): wrapper (7.7.26015): starting
20:04:42 (1116292): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 20:04:42] Arguments: --nthreads 8
[2025-11-25 20:04:42] Threads: 8
[2025-11-25 20:04:42] Checking for CVMFS
[2025-11-25 20:04:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:04:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:04:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:04:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:04:43] 2.13.3.0 13172 29367 400128 153303 1 695 31316197 32935936 39796 16776704 0 152021205 99.540 167355670 34991 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 20:04:43] CVMFS is ok
[2025-11-25 20:04:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:04:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:04:43] Further information can be found at the LHC@home message board.
[2025-11-25 20:04:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:04:43] Checking for apptainer binary...
[2025-11-25 20:04:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:04:43] Running /usr/bin/apptainer --version
[2025-11-25 20:04:43] apptainer version 1.4.4-1.el9
[2025-11-25 20:04:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:04:44] c6-6-8-3.aglt2.org
[2025-11-25 20:04:44] apptainer works
[2025-11-25 20:04:44] Set ATHENA_PROC_NUMBER=8
[2025-11-25 20:04:44] Set ATHENA_CORE_NUMBER=8
[2025-11-25 20:04:44] Starting ATLAS job with PandaID=6896451258
[2025-11-25 20:04:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 12:45:15]  *** The last 200 lines of the pilot log: ***
[2025-11-26 12:45:15] 2025-11-26 17:44:32,756 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 12:45:15] 2025-11-26 17:44:32,756 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 12:45:15] 2025-11-26 17:44:32,787 | INFO     | fitting pss+swap vs Time
[2025-11-26 12:45:15] 2025-11-26 17:44:32,791 | INFO     | sum of square deviations: 293644600724.4568
[2025-11-26 12:45:15] 2025-11-26 17:44:32,859 | INFO     | sum of deviations: 1734211173202.6648
[2025-11-26 12:45:15] 2025-11-26 17:44:32,859 | INFO     | mean x: 1764149101.5325866
[2025-11-26 12:45:15] 2025-11-26 17:44:32,859 | INFO     | mean y: 2903875.635437882
[2025-11-26 12:45:15] 2025-11-26 17:44:32,860 | INFO     | intersect: -10415837267.655897
[2025-11-26 12:45:15] 2025-11-26 17:44:32,861 | INFO     | chi2: 8.693002020178252
[2025-11-26 12:45:15] 2025-11-26 17:44:32,862 | INFO     | sum of square deviations: 289183895784.0657
[2025-11-26 12:45:15] 2025-11-26 17:44:32,881 | INFO     | sum of deviations: 2072733484119.1638
[2025-11-26 12:45:15] 2025-11-26 17:44:32,881 | INFO     | mean x: 1764148949.0634596
[2025-11-26 12:45:15] 2025-11-26 17:44:32,881 | INFO     | mean y: 2915445.1586489254
[2025-11-26 12:45:15] 2025-11-26 17:44:32,882 | INFO     | intersect: -12641670408.362965
[2025-11-26 12:45:15] 2025-11-26 17:44:32,883 | INFO     | chi2: 5.398422338011234
[2025-11-26 12:45:15] 2025-11-26 17:44:32,883 | INFO     | current chi2=5.398422338011234 (change=37.89921680128014 %)
[2025-11-26 12:45:15] 2025-11-26 17:44:32,884 | INFO     | sum of square deviations: 284768574212.4806
[2025-11-26 12:45:15] 2025-11-26 17:44:32,903 | INFO     | sum of deviations: 2346705244243.7627
[2025-11-26 12:45:15] 2025-11-26 17:44:32,903 | INFO     | mean x: 1764148796.5936215
[2025-11-26 12:45:15] 2025-11-26 17:44:32,903 | INFO     | mean y: 2924895.606995885
[2025-11-26 12:45:15] 2025-11-26 17:44:32,903 | INFO     | intersect: -14534975727.878067
[2025-11-26 12:45:15] 2025-11-26 17:44:32,905 | INFO     | chi2: 2.8826306142206133
[2025-11-26 12:45:15] 2025-11-26 17:44:32,905 | INFO     | current chi2=2.8826306142206133 (change=46.60235095124907 %)
[2025-11-26 12:45:15] 2025-11-26 17:44:32,906 | INFO     | sum of square deviations: 280398166503.32385
[2025-11-26 12:45:15] 2025-11-26 17:44:32,924 | INFO     | sum of deviations: 2402861204098.465
[2025-11-26 12:45:15] 2025-11-26 17:44:32,925 | INFO     | mean x: 1764148644.1189246
[2025-11-26 12:45:15] 2025-11-26 17:44:32,925 | INFO     | mean y: 2926851.4829369183
[2025-11-26 12:45:15] 2025-11-26 17:44:32,925 | INFO     | intersect: -15114876478.254683
[2025-11-26 12:45:15] 2025-11-26 17:44:32,926 | INFO     | chi2: 2.6618144702235926
[2025-11-26 12:45:15] 2025-11-26 17:44:32,926 | INFO     | current chi2=2.6618144702235926 (change=7.660230308652413 %)
[2025-11-26 12:45:15] 2025-11-26 17:44:32,927 | INFO     | right removable region: 966
[2025-11-26 12:45:15] 2025-11-26 17:44:32,928 | INFO     | sum of square deviations: 289180282144.06573
[2025-11-26 12:45:15] 2025-11-26 17:44:32,946 | INFO     | sum of deviations: 1434837156844.8281
[2025-11-26 12:45:15] 2025-11-26 17:44:32,947 | INFO     | mean x: 1764149254.0634596
[2025-11-26 12:45:15] 2025-11-26 17:44:32,947 | INFO     | mean y: 2914097.5834186287
[2025-11-26 12:45:15] 2025-11-26 17:44:32,947 | INFO     | intersect: -8750334502.849497
[2025-11-26 12:45:15] 2025-11-26 17:44:32,948 | INFO     | chi2: 6.336313517982889
[2025-11-26 12:45:15] 2025-11-26 17:44:32,948 | INFO     | current chi2=6.336313517982889 (change=27.110180081921094 %)
[2025-11-26 12:45:15] 2025-11-26 17:44:32,949 | INFO     | sum of square deviations: 284761703825.2127
[2025-11-26 12:45:15] 2025-11-26 17:44:32,970 | INFO     | sum of deviations: 1354362714496.148
[2025-11-26 12:45:15] 2025-11-26 17:44:32,970 | INFO     | mean x: 1764149406.5895061
[2025-11-26 12:45:15] 2025-11-26 17:44:32,970 | INFO     | mean y: 2916875.3086419753
[2025-11-26 12:45:15] 2025-11-26 17:44:32,970 | INFO     | intersect: -8387601045.429352
[2025-11-26 12:45:15] 2025-11-26 17:44:32,972 | INFO     | chi2: 6.250551669298898
[2025-11-26 12:45:15] 2025-11-26 17:44:32,972 | INFO     | current chi2=6.250551669298898 (change=1.353497557224612 %)
[2025-11-26 12:45:15] 2025-11-26 17:44:32,972 | INFO     | left removable region: 20
[2025-11-26 12:45:15] 2025-11-26 17:44:32,973 | INFO     | sum of square deviations: 262520468497.92932
[2025-11-26 12:45:15] 2025-11-26 17:44:32,992 | INFO     | sum of deviations: 1893899431790.3079
[2025-11-26 12:45:15] 2025-11-26 17:44:32,993 | INFO     | mean x: 1764149223.6966174
[2025-11-26 12:45:15] 2025-11-26 17:44:32,993 | INFO     | mean y: 2944546.283298097
[2025-11-26 12:45:15] 2025-11-26 17:44:32,993 | INFO     | intersect: -12724143865.029245
[2025-11-26 12:45:15] 2025-11-26 17:44:32,994 | INFO     | chi2: 0.12464773107253381
[2025-11-26 12:45:15] 2025-11-26 17:44:32,994 | INFO     | current memory leak: 7.21 B/s (using 946 data points, chi2=0.12)
[2025-11-26 12:45:15] 2025-11-26 17:44:32,995 | INFO     | could have reported an average CPU frequency of 2734 MHz (36 samples)
[2025-11-26 12:45:15] 2025-11-26 17:44:32,995 | INFO     | ..............................
[2025-11-26 12:45:15] 2025-11-26 17:44:32,995 | INFO     | . Timing measurements:
[2025-11-26 12:45:15] 2025-11-26 17:44:32,996 | INFO     | . get job = 0 s
[2025-11-26 12:45:15] 2025-11-26 17:44:32,996 | INFO     | . initial setup = 2 s
[2025-11-26 12:45:15] 2025-11-26 17:44:32,996 | INFO     | . payload setup = 11 s
[2025-11-26 12:45:15] 2025-11-26 17:44:32,996 | INFO     | . stage-in = 0 s
[2025-11-26 12:45:15] 2025-11-26 17:44:32,996 | INFO     | . payload execution = 59872 s
[2025-11-26 12:45:15] 2025-11-26 17:44:32,996 | INFO     | . stage-out = 6 s
[2025-11-26 12:45:15] 2025-11-26 17:44:32,996 | INFO     | . log creation = 1 s
[2025-11-26 12:45:15] 2025-11-26 17:44:32,996 | INFO     | ..............................
[2025-11-26 12:45:15] 2025-11-26 17:44:33,255 | INFO     | 
[2025-11-26 12:45:15] 2025-11-26 17:44:33,255 | INFO     | job summary report
[2025-11-26 12:45:15] 2025-11-26 17:44:33,255 | INFO     | --------------------------------------------------
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | PanDA job id: 6896451258
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | task id: 47556149
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | errors: (none)
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | pilot state: finished 
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | transexitcode: 0
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | exeerrorcode: 0
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | exeerrordiag: 
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | exitcode: 0
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | exitmsg: OK
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | cpuconsumptiontime: 249037 s
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | nevents: 1000
[2025-11-26 12:45:15] 2025-11-26 17:44:33,256 | INFO     | neventsw: 0
[2025-11-26 12:45:15] 2025-11-26 17:44:33,257 | INFO     | pid: 1138055
[2025-11-26 12:45:15] 2025-11-26 17:44:33,257 | INFO     | pgrp: 1138055
[2025-11-26 12:45:15] 2025-11-26 17:44:33,257 | INFO     | corecount: 8
[2025-11-26 12:45:15] 2025-11-26 17:44:33,257 | INFO     | event service: False
[2025-11-26 12:45:15] 2025-11-26 17:44:33,257 | INFO     | sizes: {0: 2284143, 1: 2284342, 12: 2284342, 14: 2284632, 23: 2284660, 59887: 2336618, 59894: 2345612, 59895: 2345668, 59918: 2345914}
[2025-11-26 12:45:15] 2025-11-26 17:44:33,257 | INFO     | --------------------------------------------------
[2025-11-26 12:45:15] 2025-11-26 17:44:33,257 | INFO     | 
[2025-11-26 12:45:15] 2025-11-26 17:44:33,271 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 12:45:15] 2025-11-26 17:44:33,297 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,298 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,298 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,298 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,298 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,298 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,298 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,298 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,298 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 12:45:15] 2025-11-26 17:44:33,299 | INFO     | job 6896451258 has completed (purged errors)
[2025-11-26 12:45:15] 2025-11-26 17:44:33,300 | INFO     | overall cleanup function is called
[2025-11-26 12:45:15] 2025-11-26 17:44:34,317 | INFO     | --- collectZombieJob: --- 10, [1138055]
[2025-11-26 12:45:15] 2025-11-26 17:44:34,317 | INFO     | zombie collector waiting for pid 1138055
[2025-11-26 12:45:15] 2025-11-26 17:44:34,318 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 12:45:15] 2025-11-26 17:44:34,318 | INFO     | collected zombie processes
[2025-11-26 12:45:15] 2025-11-26 17:44:34,318 | INFO     | will attempt to kill all subprocesses of pid=1138055
[2025-11-26 12:45:15] 2025-11-26 17:44:35,224 | INFO     | process IDs to be killed: [1138055] (in reverse order)
[2025-11-26 12:45:15] 2025-11-26 17:44:35,454 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 12:45:15] 2025-11-26 17:44:35,455 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 12:45:15] 2025-11-26 17:44:35,515 | INFO     | did not find any defunct processes belonging to 1138055
[2025-11-26 12:45:15] 2025-11-26 17:44:35,541 | INFO     | did not find any defunct processes belonging to 1138055
[2025-11-26 12:45:15] 2025-11-26 17:44:35,543 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 12:45:15] 2025-11-26 17:44:35,543 | INFO     | ready for new job
[2025-11-26 12:45:15] 2025-11-26 17:44:35,543 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 12:45:15] 2025-11-26 17:44:35,551 | INFO     | ***************************************
[2025-11-26 12:45:15] 2025-11-26 17:44:35,551 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 12:45:15] 2025-11-26 17:44:35,551 | INFO     | ***************************************
[2025-11-26 12:45:15] 2025-11-26 17:44:35,551 | INFO     | 
[2025-11-26 12:45:15] 2025-11-26 17:44:35,568 | INFO     | architecture information:
[2025-11-26 12:45:15] 2025-11-26 17:44:35,583 | INFO     | executing command: cat /etc/os-release
[2025-11-26 12:45:15] 2025-11-26 17:44:35,639 | INFO     | cat /etc/os-release:
[2025-11-26 12:45:15] NAME="CentOS Linux"
[2025-11-26 12:45:15] VERSION="7 (Core)"
[2025-11-26 12:45:15] ID="centos"
[2025-11-26 12:45:15] ID_LIKE="rhel fedora"
[2025-11-26 12:45:15] VERSION_ID="7"
[2025-11-26 12:45:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 12:45:15] ANSI_COLOR="0;31"
[2025-11-26 12:45:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 12:45:15] HOME_URL="https://www.centos.org/"
[2025-11-26 12:45:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 12:45:15] 
[2025-11-26 12:45:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 12:45:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 12:45:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 12:45:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 12:45:15] 
[2025-11-26 12:45:15] 2025-11-26 17:44:35,640 | INFO     | ***************************************
[2025-11-26 12:45:15] 2025-11-26 17:44:36,143 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 12:45:15] 2025-11-26 17:44:36,280 | INFO     | sufficient remaining disk space (86784344064 B)
[2025-11-26 12:45:15] 2025-11-26 17:44:36,280 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 12:45:15] 2025-11-26 17:44:36,280 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 12:45:15] 2025-11-26 17:44:36,280 | INFO     | update_server=False
[2025-11-26 12:45:15] 2025-11-26 17:44:36,281 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 12:45:15] 2025-11-26 17:44:36,281 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:45:15] 2025-11-26 17:44:36,281 | INFO     | aborting loop
[2025-11-26 12:45:15] 2025-11-26 17:44:36,746 | INFO     | all job control threads have been joined
[2025-11-26 12:45:15] 2025-11-26 17:44:37,234 | INFO     | all data control threads have been joined
[2025-11-26 12:45:15] 2025-11-26 17:44:37,286 | INFO     | [job] retrieve thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:37,287 | INFO     | [job] job monitor thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:37,383 | INFO     | [payload] validate_post thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:37,485 | INFO     | [payload] failed_post thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:37,489 | INFO     | all payload control threads have been joined
[2025-11-26 12:45:15] 2025-11-26 17:44:37,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 12:45:15] 2025-11-26 17:44:37,640 | INFO     | [job] validate thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:37,752 | INFO     | [job] control thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:38,110 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:45:15] 2025-11-26 17:44:38,177 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:38,179 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:38,201 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:38,203 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 12:45:15] 2025-11-26 17:44:38,239 | INFO     | [data] control thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:38,252 | INFO     | [data] copytool_in thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:38,358 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:38,496 | INFO     | [payload] control thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:39,127 | INFO     | [job] queue monitor thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:39,509 | INFO     | [data] copytool_out thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:44:42,214 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 12:45:15] 2025-11-26 17:45:06,595 | INFO     | PID=1123452 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 12:45:15] 2025-11-26 17:45:06,596 | INFO     | .. there are 52 such processes running
[2025-11-26 12:45:15] 2025-11-26 17:45:06,596 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 12:45:15] 2025-11-26 17:45:06,596 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 12:45:15] 2025-11-26 17:45:06,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 12:45:15] 2025-11-26 17:45:07,574 | INFO     | [monitor] cgroup control has ended
[2025-11-26 12:45:15] 2025-11-26 17:45:08,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405527328576)>', '<ExcThread(monitor, started 140404880037632)>']
[2025-11-26 12:45:15] 2025-11-26 17:45:09,619 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 12:45:15] 2025-11-26 17:45:09,620 | INFO     | [monitor] control thread has ended
[2025-11-26 12:45:15] 2025-11-26 17:45:13,817 | INFO     | all workflow threads have been joined
[2025-11-26 12:45:15] 2025-11-26 17:45:13,817 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 12:45:15] 2025-11-26 17:45:13,821 | INFO     | traces error code: 0
[2025-11-26 12:45:15] 2025-11-26 17:45:13,822 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 12:45:15] 2025-11-26 17:45:14,680 [wrapper] ==== pilot stdout END ====
[2025-11-26 12:45:15] 2025-11-26 17:45:14,684 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 12:45:15] 2025-11-26 17:45:14,692 [wrapper] pilotpid: 1123452
[2025-11-26 12:45:15] 2025-11-26 17:45:14,696 [wrapper] Pilot exit status: 0
[2025-11-26 12:45:15] 2025-11-26 17:45:14,772 [wrapper] pandaids: 6896451258
[2025-11-26 12:45:15] 2025-11-26 17:45:14,933 [wrapper] cleanup supervisor_pilot 1361891 1123453
[2025-11-26 12:45:15] 2025-11-26 17:45:14,942 [wrapper] Test setup, not cleaning
[2025-11-26 12:45:15] 2025-11-26 17:45:14,959 [wrapper] apfmon messages muted
[2025-11-26 12:45:15] 2025-11-26 17:45:14,964 [wrapper] ==== wrapper stdout END ====
[2025-11-26 12:45:15] 2025-11-26 17:45:14,967 [wrapper] ==== wrapper stderr END ====
[2025-11-26 12:45:15]  *** Error codes and diagnostics ***
[2025-11-26 12:45:15]     "exeErrorCode": 0,
[2025-11-26 12:45:15]     "exeErrorDiag": "",
[2025-11-26 12:45:15]     "pilotErrorCode": 0,
[2025-11-26 12:45:15]     "pilotErrorDiag": "",
[2025-11-26 12:45:15]  *** Listing of results directory ***
[2025-11-26 12:45:15] total 1314740
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:30 queuedata.json
[2025-11-26 12:45:15] -rwx------. 1 boincer umatlas     36292 Nov 24 23:31 runpilot2-wrapper.sh
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas       100 Nov 25 20:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 12:45:15] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 20:04 run_atlas
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas       105 Nov 25 20:04 job.xml
[2025-11-26 12:45:15] -rw-r--r--. 2 boincer umatlas 409326318 Nov 25 20:04 EVNT.47483658._001510.pool.root.1
[2025-11-26 12:45:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 20:04 start_atlas.sh
[2025-11-26 12:45:15] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 20:04 shared
[2025-11-26 12:45:15] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 20:04 input.tar.gz
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas         0 Nov 25 20:04 boinc_lockfile
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 20:04 pandaJob.out
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas        57 Nov 25 20:04 setup.sh.local
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas    991877 Nov 25 20:05 agis_schedconf.cvmfs.json
[2025-11-26 12:45:15] drwx------. 5 boincer umatlas      4096 Nov 25 20:05 pilot3
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas       533 Nov 26 12:28 boinc_task_state.xml
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas      6880 Nov 26 12:38 init_data.xml
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas 913950150 Nov 26 12:43 HITS.47556149._004964.pool.root.1
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas      1059 Nov 26 12:43 memory_monitor_summary.json
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas   1516240 Nov 26 12:44 agis_ddmendpoints.agis.ALL.json
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas   2124409 Nov 26 12:44 log.47556149._004964.job.log.tgz.1
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas      8617 Nov 26 12:44 heartbeat.json
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas        95 Nov 26 12:45 pilot_heartbeat.json
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas        29 Nov 26 12:45 wrapper_checkpoint.txt
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 12:45 boinc_mmap_file
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas      4824 Nov 26 12:45 pilotlog.txt
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas   7423259 Nov 26 12:45 log.47556149._004964.job.log.1
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas       353 Nov 26 12:45 output.list
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas       620 Nov 26 12:45 runtime_log
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas   9564160 Nov 26 12:45 result.tar.gz
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas       660 Nov 26 12:45 rXiNDmetzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR7LKDmPthdin.diag
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 12:45 runtime_log.err
[2025-11-26 12:45:15] -rw-r--r--. 1 boincer umatlas     21153 Nov 26 12:45 stderr.txt
[2025-11-26 12:45:15] HITS file was successfully produced:
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas 913950150 Nov 26 12:43 shared/HITS.pool.root.1
[2025-11-26 12:45:15]  *** Contents of shared directory: ***
[2025-11-26 12:45:15] total 1302212
[2025-11-26 12:45:15] -rw-r--r--. 2 boincer umatlas 409326318 Nov 25 20:04 ATLAS.root_0
[2025-11-26 12:45:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 20:04 start_atlas.sh
[2025-11-26 12:45:15] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 20:04 input.tar.gz
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas 913950150 Nov 26 12:43 HITS.pool.root.1
[2025-11-26 12:45:15] -rw-------. 1 boincer umatlas   9564160 Nov 26 12:45 result.tar.gz
12:45:17 (1116292): run_atlas exited; CPU time 251576.951456
12:45:17 (1116292): called boinc_finish(0)

</stderr_txt>
]]>

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