Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:34:44 (2205982): wrapper (7.7.26015): starting
00:34:44 (2205982): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 00:34:44] Arguments: --nthreads 3
[2025-11-26 00:34:44] Threads: 3
[2025-11-26 00:34:44] Checking for CVMFS
[2025-11-26 00:34:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:34:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:34:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:34:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:34:45] 2.9.2.0 2184780 4 47000 153302 3 88 35446684 36864000 0 130560 0 62605 100.000 1 17 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 00:34:45] CVMFS is ok
[2025-11-26 00:34:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:34:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:34:45] Further information can be found at the LHC@home message board.
[2025-11-26 00:34:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:34:45] Checking for apptainer binary...
[2025-11-26 00:34:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:34:45] Running /usr/bin/apptainer --version
[2025-11-26 00:34:45] apptainer version 1.4.1-1.1
[2025-11-26 00:34:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:34:45] thA335
[2025-11-26 00:34:45] apptainer works
[2025-11-26 00:34:45] Set ATHENA_PROC_NUMBER=3
[2025-11-26 00:34:45] Set ATHENA_CORE_NUMBER=3
[2025-11-26 00:34:45] Starting ATLAS job with PandaID=6896557282
[2025-11-26 00:34:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 00:39:04]  *** The last 200 lines of the pilot log: ***
[2025-11-26 00:39:04] 2025-11-25 23:38:11,061 | INFO     | sufficient remaining disk space (827395670016 B)
[2025-11-26 00:39:04] 2025-11-25 23:38:11,061 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 00:39:04] 2025-11-25 23:38:11,061 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 00:39:04] 2025-11-25 23:38:11,061 | INFO     | update_server=False
[2025-11-26 00:39:04] 2025-11-25 23:38:11,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 00:39:04] 2025-11-25 23:38:11,061 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 00:39:04] 2025-11-25 23:38:11,061 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 00:39:04] 2025-11-25 23:38:11,061 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 00:39:04] 2025-11-25 23:38:11,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:39:04] 2025-11-25 23:38:11,062 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 00:39:04] 2025-11-25 23:38:11,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 00:39:04] 2025-11-25 23:38:11,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 00:39:04] 2025-11-25 23:38:11,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:39:04] 2025-11-25 23:38:11,421 | INFO     | aborting loop
[2025-11-26 00:39:04] 2025-11-25 23:38:11,934 | INFO     | all payload control threads have been joined
[2025-11-26 00:39:04] 2025-11-25 23:38:12,005 | INFO     | all data control threads have been joined
[2025-11-26 00:39:04] 2025-11-25 23:38:12,067 | INFO     | [job] retrieve thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:12,068 | INFO     | [job] queue monitor thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:12,264 | INFO     | all job control threads have been joined
[2025-11-26 00:39:04] 2025-11-25 23:38:12,373 | INFO     | [data] copytool_in thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:12,427 | INFO     | [job] job monitor thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:12,429 | INFO     | [payload] validate_post thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:12,685 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:12,749 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:12,876 | INFO     | [job] validate thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:12,939 | INFO     | [payload] control thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:12,953 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:13,009 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:13,011 | INFO     | [data] control thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:13,068 | INFO     | [data] copytool_out thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:13,130 | INFO     | [payload] failed_post thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:13,270 | INFO     | [job] control thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:15,069 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 00:39:04] 2025-11-25 23:38:57,683 | INFO     | [monitor] cgroup control has ended
[2025-11-26 00:39:04] 2025-11-25 23:38:58,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139929280386880)>', '<ExcThread(monitor, started 139928910403328)>']
[2025-11-26 00:39:04] 2025-11-25 23:38:59,319 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 00:39:04] 2025-11-25 23:38:59,319 | INFO     | [monitor] control thread has ended
[2025-11-26 00:39:04] 2025-11-25 23:39:03,716 | INFO     | all workflow threads have been joined
[2025-11-26 00:39:04] 2025-11-25 23:39:03,717 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 00:39:04] 2025-11-25 23:39:03,718 | INFO     | traces error code: 0
[2025-11-26 00:39:04] 2025-11-25 23:39:03,718 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 00:39:04] 2025-11-25 23:39:03,765 [wrapper] ==== pilot stdout END ====
[2025-11-26 00:39:04] 2025-11-25 23:39:03,768 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 00:39:04] 2025-11-25 23:39:03,771 [wrapper] pilotpid: 2209715
[2025-11-26 00:39:04] 2025-11-25 23:39:03,774 [wrapper] Pilot exit status: 0
[2025-11-26 00:39:04] 2025-11-25 23:39:03,782 [wrapper] pandaids: 6896557282
[2025-11-26 00:39:04] 2025-11-25 23:39:03,798 [wrapper] cleanup supervisor_pilot 2209721 2209716
[2025-11-26 00:39:04] 2025-11-25 23:39:03,801 [wrapper] Test setup, not cleaning
[2025-11-26 00:39:04] 2025-11-25 23:39:03,803 [wrapper] apfmon messages muted
[2025-11-26 00:39:04] 2025-11-25 23:39:03,806 [wrapper] ==== wrapper stdout END ====
[2025-11-26 00:39:04] 2025-11-25 23:39:03,808 [wrapper] ==== wrapper stderr END ====
[2025-11-26 00:39:04]  *** Error codes and diagnostics ***
[2025-11-26 00:39:04]     "exeErrorCode": 65,
[2025-11-26 00:39:04]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 00:39:04]     "pilotErrorCode": 1305,
[2025-11-26 00:39:04]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 00:39:04]  *** Listing of results directory ***
[2025-11-26 00:39:04] total 404036
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc    576529 Nov 25 05:09 pilot3.tar.gz
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc      5112 Nov 25 05:51 queuedata.json
[2025-11-26 00:39:04] -rwx------ 1 boinc boinc     36292 Nov 25 05:52 runpilot2-wrapper.sh
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc       100 Nov 26 00:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 00:39:04] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 00:34 run_atlas
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc       105 Nov 26 00:34 job.xml
[2025-11-26 00:39:04] -rw-r--r-- 2 boinc boinc 409545301 Nov 26 00:34 EVNT.47483658._002085.pool.root.1
[2025-11-26 00:39:04] -rw-r--r-- 2 boinc boinc    590105 Nov 26 00:34 input.tar.gz
[2025-11-26 00:39:04] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:34 start_atlas.sh
[2025-11-26 00:39:04] drwxrwx--x 2 boinc boinc      4096 Nov 26 00:34 shared
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:34 boinc_setup_complete
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc      6196 Nov 26 00:34 init_data.xml
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:34 boinc_lockfile
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc      2783 Nov 26 00:34 pandaJob.out
[2025-11-26 00:39:04] -rw------- 1 boinc boinc    991877 Nov 26 00:34 agis_schedconf.cvmfs.json
[2025-11-26 00:39:04] -rw------- 1 boinc boinc   1516240 Nov 26 00:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 00:39:04] drwx------ 5 boinc boinc      4096 Nov 26 00:34 pilot3
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc       523 Nov 26 00:35 boinc_task_state.xml
[2025-11-26 00:39:04] -rw------- 1 boinc boinc       957 Nov 26 00:36 memory_monitor_summary.json
[2025-11-26 00:39:04] -rw------- 1 boinc boinc     55653 Nov 26 00:36 log.47556161._000684.job.log.tgz.1
[2025-11-26 00:39:04] -rw------- 1 boinc boinc        95 Nov 26 00:37 pilot_heartbeat.json
[2025-11-26 00:39:04] -rw------- 1 boinc boinc      8403 Nov 26 00:38 heartbeat.json
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc      8192 Nov 26 00:38 boinc_mmap_file
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc        23 Nov 26 00:38 wrapper_checkpoint.txt
[2025-11-26 00:39:04] -rw------- 1 boinc boinc      4556 Nov 26 00:39 pilotlog.txt
[2025-11-26 00:39:04] -rw------- 1 boinc boinc     93052 Nov 26 00:39 log.47556161._000684.job.log.1
[2025-11-26 00:39:04] -rw------- 1 boinc boinc       186 Nov 26 00:39 output.list
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc       620 Nov 26 00:39 runtime_log
[2025-11-26 00:39:04] -rw------- 1 boinc boinc    163840 Nov 26 00:39 result.tar.gz
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc      8744 Nov 26 00:39 runtime_log.err
[2025-11-26 00:39:04] -rw------- 1 boinc boinc       649 Nov 26 00:39 mJ2KDmfD0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm67LKDmw8lpKo.diag
[2025-11-26 00:39:04] -rw-r--r-- 1 boinc boinc      8039 Nov 26 00:39 stderr.txt
[2025-11-26 00:39:04] No HITS result produced
[2025-11-26 00:39:04]  *** Contents of shared directory: ***
[2025-11-26 00:39:04] total 400708
[2025-11-26 00:39:04] -rw-r--r-- 2 boinc boinc 409545301 Nov 26 00:34 ATLAS.root_0
[2025-11-26 00:39:04] -rw-r--r-- 2 boinc boinc    590105 Nov 26 00:34 input.tar.gz
[2025-11-26 00:39:04] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:34 start_atlas.sh
[2025-11-26 00:39:04] -rw------- 1 boinc boinc    163840 Nov 26 00:39 result.tar.gz
00:39:05 (2205982): run_atlas exited; CPU time 31.345822
00:39:05 (2205982): called boinc_finish(0)

</stderr_txt>
]]>

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