Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:13 (1246539): wrapper (7.7.26015): starting
00:04:13 (1246539): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:13] Arguments: --nthreads 9
[2025-11-26 00:04:13] Threads: 9
[2025-11-26 00:04:13] Checking for CVMFS
[2025-11-26 00:04:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:13] 2.13.2.0 7153 35391 236352 153309 0 317 34556111 40960000 37669 16776704 0 128592635 99.552 140309395 33879 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:04:13] CVMFS is ok
[2025-11-26 00:04:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:13] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:13] Checking for apptainer binary...
[2025-11-26 00:04:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:13] Running /usr/bin/apptainer --version
[2025-11-26 00:04:13] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:14] c-212-15.aglt2.org
[2025-11-26 00:04:14] apptainer works
[2025-11-26 00:04:14] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:14] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:14] Starting ATLAS job with PandaID=6896450935
[2025-11-26 00:04:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:52:04]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:52:04] 2025-11-27 10:51:14,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:52:04] 2025-11-27 10:51:15,909 | INFO     | time since job start (107186s) is within the limit (172800.0s)
[2025-11-27 05:52:04] 2025-11-27 10:51:17,046 | INFO     | monitor loop #6769: job 0:6896450935 is in state 'finished'
[2025-11-27 05:52:04] 2025-11-27 10:51:17,046 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:52:04] 2025-11-27 10:51:18,991 | INFO     | PID=1266609 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 05:52:04] 2025-11-27 10:51:18,991 | INFO     | .. there are 46 such processes running
[2025-11-27 05:52:04] 2025-11-27 10:51:19,555 | INFO     | monitor loop #6770: job 0:6896450935 is in state 'finished'
[2025-11-27 05:52:04] 2025-11-27 10:51:19,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:52:04] 2025-11-27 10:51:19,992 | INFO     | time since job start (107190s) is within the limit (172800.0s)
[2025-11-27 05:52:04] 2025-11-27 10:51:21,998 | INFO     | time since job start (107192s) is within the limit (172800.0s)
[2025-11-27 05:52:04] 2025-11-27 10:51:22,061 | INFO     | monitor loop #6771: job 0:6896450935 is in state 'finished'
[2025-11-27 05:52:04] 2025-11-27 10:51:22,061 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:52:04] 2025-11-27 10:51:22,815 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:52:04] 2025-11-27 10:51:22,869 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3251.5726874999996
[2025-11-27 05:52:04] 2025-11-27 10:51:22,898 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896450935/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:52:04] 2025-11-27 10:51:22,898 | INFO     | extracted standard info from prmon json
[2025-11-27 05:52:04] 2025-11-27 10:51:22,898 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:52:04] 2025-11-27 10:51:22,898 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:52:04] 2025-11-27 10:51:23,040 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:52:04] 2025-11-27 10:51:23,060 | INFO     | sum of square deviations: 1679064567393.7888
[2025-11-27 05:52:04] 2025-11-27 10:51:23,248 | INFO     | sum of deviations: 11101609534741.959
[2025-11-27 05:52:04] 2025-11-27 10:51:23,248 | INFO     | mean x: 1764187095.9100227
[2025-11-27 05:52:04] 2025-11-27 10:51:23,248 | INFO     | mean y: 2944028.784738041
[2025-11-27 05:52:04] 2025-11-27 10:51:23,249 | INFO     | intersect: -11661477140.809341
[2025-11-27 05:52:04] 2025-11-27 10:51:23,250 | INFO     | chi2: 33.882533414889394
[2025-11-27 05:52:04] 2025-11-27 10:51:23,275 | INFO     | sum of square deviations: 1664763826508.819
[2025-11-27 05:52:04] 2025-11-27 10:51:23,524 | INFO     | sum of deviations: 11706312617075.545
[2025-11-27 05:52:04] 2025-11-27 10:51:23,524 | INFO     | mean x: 1764186943.4140491
[2025-11-27 05:52:04] 2025-11-27 10:51:23,524 | INFO     | mean y: 2950476.2295830953
[2025-11-27 05:52:04] 2025-11-27 10:51:23,524 | INFO     | intersect: -12402487187.488428
[2025-11-27 05:52:04] 2025-11-27 10:51:23,525 | INFO     | chi2: 30.364217593816868
[2025-11-27 05:52:04] 2025-11-27 10:51:23,526 | INFO     | current chi2=30.364217593816868 (change=10.383862912465785 %)
[2025-11-27 05:52:04] 2025-11-27 10:51:23,526 | INFO     | right removable region: 1750
[2025-11-27 05:52:04] 2025-11-27 10:51:23,550 | INFO     | sum of square deviations: 1664762316148.8162
[2025-11-27 05:52:04] 2025-11-27 10:51:24,021 | INFO     | sum of deviations: 10404819850446.78
[2025-11-27 05:52:04] 2025-11-27 10:51:24,021 | INFO     | mean x: 1764187248.4140491
[2025-11-27 05:52:04] 2025-11-27 10:51:24,021 | INFO     | mean y: 2951458.0416904627
[2025-11-27 05:52:04] 2025-11-27 10:51:24,021 | INFO     | intersect: -11023277526.206114
[2025-11-27 05:52:04] 2025-11-27 10:51:24,040 | INFO     | time since job start (107195s) is within the limit (172800.0s)
[2025-11-27 05:52:04] 2025-11-27 10:51:24,048 | INFO     | chi2: 30.14450004325528
[2025-11-27 05:52:04] 2025-11-27 10:51:24,048 | INFO     | current chi2=30.14450004325528 (change=11.032331395832006 %)
[2025-11-27 05:52:04] 2025-11-27 10:51:24,048 | INFO     | left removable region: 10
[2025-11-27 05:52:04] 2025-11-27 10:51:24,050 | INFO     | sum of square deviations: 1633585529117.6807
[2025-11-27 05:52:04] 2025-11-27 10:51:24,611 | INFO     | sum of deviations: 10532236951642.543
[2025-11-27 05:52:04] 2025-11-27 10:51:24,611 | INFO     | mean x: 1764187217.9229884
[2025-11-27 05:52:04] 2025-11-27 10:51:24,611 | INFO     | mean y: 2965567.9591954025
[2025-11-27 05:52:04] 2025-11-27 10:51:24,611 | INFO     | intersect: -11371301328.405691
[2025-11-27 05:52:04] 2025-11-27 10:51:24,613 | INFO     | chi2: 23.457652790989094
[2025-11-27 05:52:04] 2025-11-27 10:51:24,613 | INFO     | current memory leak: 6.45 B/s (using 1740 data points, chi2=23.46)
[2025-11-27 05:52:04] 2025-11-27 10:51:24,653 | INFO     | monitor loop #6772: job 0:6896450935 is in state 'finished'
[2025-11-27 05:52:04] 2025-11-27 10:51:24,653 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:52:04] 2025-11-27 10:51:24,658 | INFO     | could have reported an average CPU frequency of 3284 MHz (62 samples)
[2025-11-27 05:52:04] 2025-11-27 10:51:24,658 | INFO     | ..............................
[2025-11-27 05:52:04] 2025-11-27 10:51:24,658 | INFO     | . Timing measurements:
[2025-11-27 05:52:04] 2025-11-27 10:51:24,658 | INFO     | . get job = 0 s
[2025-11-27 05:52:04] 2025-11-27 10:51:24,659 | INFO     | . initial setup = 4 s
[2025-11-27 05:52:04] 2025-11-27 10:51:24,659 | INFO     | . payload setup = 22 s
[2025-11-27 05:52:04] 2025-11-27 10:51:24,659 | INFO     | . stage-in = 0 s
[2025-11-27 05:52:04] 2025-11-27 10:51:24,659 | INFO     | . payload execution = 107097 s
[2025-11-27 05:52:04] 2025-11-27 10:51:24,659 | INFO     | . stage-out = 5 s
[2025-11-27 05:52:04] 2025-11-27 10:51:24,659 | INFO     | . log creation = 1 s
[2025-11-27 05:52:04] 2025-11-27 10:51:24,659 | INFO     | ..............................
[2025-11-27 05:52:04] 2025-11-27 10:51:25,405 | INFO     | 
[2025-11-27 05:52:04] 2025-11-27 10:51:25,406 | INFO     | job summary report
[2025-11-27 05:52:04] 2025-11-27 10:51:25,406 | INFO     | --------------------------------------------------
[2025-11-27 05:52:04] 2025-11-27 10:51:25,406 | INFO     | PanDA job id: 6896450935
[2025-11-27 05:52:04] 2025-11-27 10:51:25,406 | INFO     | task id: 47556161
[2025-11-27 05:52:04] 2025-11-27 10:51:25,406 | INFO     | errors: (none)
[2025-11-27 05:52:04] 2025-11-27 10:51:25,406 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:52:04] 2025-11-27 10:51:25,406 | INFO     | pilot state: finished 
[2025-11-27 05:52:04] 2025-11-27 10:51:25,406 | INFO     | transexitcode: 0
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | exeerrorcode: 0
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | exeerrordiag: 
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | exitcode: 0
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | exitmsg: OK
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | cpuconsumptiontime: 201172 s
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | nevents: 1000
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | neventsw: 0
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | pid: 1304054
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | pgrp: 1304054
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | corecount: 9
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | event service: False
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | sizes: {0: 2284211, 1: 2284211, 11: 2284239, 14: 2284529, 22: 2284557, 107124: 2360532, 107130: 2369526, 107133: 2369582, 107158: 2369828}
[2025-11-27 05:52:04] 2025-11-27 10:51:25,407 | INFO     | --------------------------------------------------
[2025-11-27 05:52:04] 2025-11-27 10:51:25,408 | INFO     | 
[2025-11-27 05:52:04] 2025-11-27 10:51:25,408 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 05:52:04] 2025-11-27 10:51:25,490 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,490 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,490 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,490 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,491 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,492 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,492 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:52:04] 2025-11-27 10:51:25,492 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,492 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:52:04] 2025-11-27 10:51:25,492 | INFO     | job 6896450935 has completed (purged errors)
[2025-11-27 05:52:04] 2025-11-27 10:51:25,492 | INFO     | overall cleanup function is called
[2025-11-27 05:52:04] 2025-11-27 10:51:26,525 | INFO     | --- collectZombieJob: --- 10, [1304054]
[2025-11-27 05:52:04] 2025-11-27 10:51:26,525 | INFO     | zombie collector waiting for pid 1304054
[2025-11-27 05:52:04] 2025-11-27 10:51:26,525 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:52:04] 2025-11-27 10:51:26,525 | INFO     | collected zombie processes
[2025-11-27 05:52:04] 2025-11-27 10:51:26,525 | INFO     | will attempt to kill all subprocesses of pid=1304054
[2025-11-27 05:52:04] 2025-11-27 10:51:28,277 | INFO     | process IDs to be killed: [1304054] (in reverse order)
[2025-11-27 05:52:04] 2025-11-27 10:51:28,650 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:52:04] 2025-11-27 10:51:28,650 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:52:04] 2025-11-27 10:51:28,789 | INFO     | did not find any defunct processes belonging to 1304054
[2025-11-27 05:52:04] 2025-11-27 10:51:28,978 | INFO     | did not find any defunct processes belonging to 1304054
[2025-11-27 05:52:04] 2025-11-27 10:51:28,981 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:52:04] 2025-11-27 10:51:28,981 | INFO     | ready for new job
[2025-11-27 05:52:04] 2025-11-27 10:51:28,982 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:52:04] 2025-11-27 10:51:28,995 | INFO     | ***************************************
[2025-11-27 05:52:04] 2025-11-27 10:51:28,995 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:52:04] 2025-11-27 10:51:28,995 | INFO     | ***************************************
[2025-11-27 05:52:04] 2025-11-27 10:51:28,995 | INFO     | 
[2025-11-27 05:52:04] 2025-11-27 10:51:29,000 | INFO     | architecture information:
[2025-11-27 05:52:04] 2025-11-27 10:51:29,008 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:52:04] 2025-11-27 10:51:29,041 | INFO     | cat /etc/os-release:
[2025-11-27 05:52:04] NAME="CentOS Linux"
[2025-11-27 05:52:04] VERSION="7 (Core)"
[2025-11-27 05:52:04] ID="centos"
[2025-11-27 05:52:04] ID_LIKE="rhel fedora"
[2025-11-27 05:52:04] VERSION_ID="7"
[2025-11-27 05:52:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:52:04] ANSI_COLOR="0;31"
[2025-11-27 05:52:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:52:04] HOME_URL="https://www.centos.org/"
[2025-11-27 05:52:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:52:04] 
[2025-11-27 05:52:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:52:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:52:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:52:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:52:04] 
[2025-11-27 05:52:04] 2025-11-27 10:51:29,041 | INFO     | ***************************************
[2025-11-27 05:52:04] 2025-11-27 10:51:29,545 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 05:52:04] 2025-11-27 10:51:29,654 | INFO     | sufficient remaining disk space (120698437632 B)
[2025-11-27 05:52:04] 2025-11-27 10:51:29,654 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:52:04] 2025-11-27 10:51:29,654 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:52:04] 2025-11-27 10:51:29,659 | INFO     | update_server=False
[2025-11-27 05:52:04] 2025-11-27 10:51:29,659 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:52:04] 2025-11-27 10:51:29,660 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:52:04] 2025-11-27 10:51:29,684 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 05:52:04] 2025-11-27 10:51:29,684 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 05:52:04] 2025-11-27 10:51:29,684 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:52:04] 2025-11-27 10:51:29,684 | INFO     | will abort loop
[2025-11-27 05:52:04] 2025-11-27 10:51:29,737 | INFO     | all job control threads have been joined
[2025-11-27 05:52:04] 2025-11-27 10:51:30,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:52:04] 2025-11-27 10:51:30,515 | INFO     | all data control threads have been joined
[2025-11-27 05:52:04] 2025-11-27 10:51:30,619 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:52:04] 2025-11-27 10:51:30,665 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:30,690 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:30,742 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:30,744 | INFO     | [job] control thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:30,893 | INFO     | [job] validate thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:30,966 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:31,064 | INFO     | all payload control threads have been joined
[2025-11-27 05:52:04] 2025-11-27 10:51:31,077 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:31,190 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:31,361 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:31,474 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:31,521 | INFO     | [data] control thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:31,789 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:31,933 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:32,069 | INFO     | [payload] control thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:32,626 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:33,669 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:52:04] 2025-11-27 10:51:56,904 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:52:04] 2025-11-27 10:51:58,286 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140425884403520)>', '<ExcThread(monitor, started 140425381779200)>']
[2025-11-27 05:52:04] 2025-11-27 10:51:58,694 | INFO     | PID=1266609 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:52:04] 2025-11-27 10:51:58,694 | INFO     | .. there are 46 such processes running
[2025-11-27 05:52:04] 2025-11-27 10:51:58,695 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:52:04] 2025-11-27 10:51:58,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:52:04] 2025-11-27 10:51:58,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:52:04] 2025-11-27 10:51:58,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:52:04] 2025-11-27 10:51:58,695 | INFO     | [monitor] control thread has ended
[2025-11-27 05:52:04] 2025-11-27 10:52:03,318 | INFO     | all workflow threads have been joined
[2025-11-27 05:52:04] 2025-11-27 10:52:03,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:52:04] 2025-11-27 10:52:03,318 | INFO     | traces error code: 0
[2025-11-27 05:52:04] 2025-11-27 10:52:03,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:52:04] 2025-11-27 10:52:03,663 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:52:04] 2025-11-27 10:52:03,678 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:52:04] 2025-11-27 10:52:03,693 [wrapper] pilotpid: 1266609
[2025-11-27 05:52:04] 2025-11-27 10:52:03,708 [wrapper] Pilot exit status: 0
[2025-11-27 05:52:04] 2025-11-27 10:52:03,731 [wrapper] pandaids: 6896450935
[2025-11-27 05:52:04] 2025-11-27 10:52:03,959 [wrapper] cleanup supervisor_pilot  382976 1266610
[2025-11-27 05:52:04] 2025-11-27 10:52:03,975 [wrapper] Test setup, not cleaning
[2025-11-27 05:52:04] 2025-11-27 10:52:03,994 [wrapper] apfmon messages muted
[2025-11-27 05:52:04] 2025-11-27 10:52:04,021 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:52:04] 2025-11-27 10:52:04,041 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:52:04]  *** Error codes and diagnostics ***
[2025-11-27 05:52:04]     "exeErrorCode": 0,
[2025-11-27 05:52:04]     "exeErrorDiag": "",
[2025-11-27 05:52:04]     "pilotErrorCode": 0,
[2025-11-27 05:52:04]     "pilotErrorDiag": "",
[2025-11-27 05:52:04]  *** Listing of results directory ***
[2025-11-27 05:52:04] total 1331752
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-27 05:52:04] -rwx------. 1 boincer umatlas     36292 Nov 24 23:10 runpilot2-wrapper.sh
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:10 queuedata.json
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:52:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 05:52:04] -rw-r--r--. 2 boincer umatlas 408743367 Nov 26 00:04 EVNT.47483658._002080.pool.root.1
[2025-11-27 05:52:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 05:52:04] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:04 input.tar.gz
[2025-11-27 05:52:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 00:04 pandaJob.out
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-27 05:52:04] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas       533 Nov 27 05:04 boinc_task_state.xml
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas      6950 Nov 27 05:48 init_data.xml
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas 917272486 Nov 27 05:49 HITS.47556161._000633.pool.root.1
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas      1073 Nov 27 05:50 memory_monitor_summary.json
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas   1516240 Nov 27 05:50 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas   2861686 Nov 27 05:50 log.47556161._000633.job.log.tgz.1
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas      8627 Nov 27 05:51 heartbeat.json
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas        95 Nov 27 05:51 pilot_heartbeat.json
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas      5011 Nov 27 05:52 pilotlog.txt
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 05:52 boinc_mmap_file
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas        29 Nov 27 05:52 wrapper_checkpoint.txt
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas  14025486 Nov 27 05:52 log.47556161._000633.job.log.1
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas       353 Nov 27 05:52 output.list
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas       620 Nov 27 05:52 runtime_log
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas  16906240 Nov 27 05:52 result.tar.gz
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas      9344 Nov 27 05:52 runtime_log.err
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas       669 Nov 27 05:52 NBELDmMZzh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcJJKDmECJCAo.diag
[2025-11-27 05:52:04] -rw-r--r--. 1 boincer umatlas     21878 Nov 27 05:52 stderr.txt
[2025-11-27 05:52:04] HITS file was successfully produced:
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas 917272486 Nov 27 05:49 shared/HITS.pool.root.1
[2025-11-27 05:52:04]  *** Contents of shared directory: ***
[2025-11-27 05:52:04] total 1312056
[2025-11-27 05:52:04] -rw-r--r--. 2 boincer umatlas 408743367 Nov 26 00:04 ATLAS.root_0
[2025-11-27 05:52:04] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:04 input.tar.gz
[2025-11-27 05:52:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas 917272486 Nov 27 05:49 HITS.pool.root.1
[2025-11-27 05:52:04] -rw-------. 1 boincer umatlas  16906240 Nov 27 05:52 result.tar.gz
05:52:05 (1246539): run_atlas exited; CPU time 203250.156006
05:52:05 (1246539): called boinc_finish(0)

</stderr_txt>
]]>

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