Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:42:33 (1353816): wrapper (7.7.26015): starting
18:42:33 (1353816): wrapper: running run_atlas (--nthreads 11)
[2025-11-25 18:42:33] Arguments: --nthreads 11
[2025-11-25 18:42:33] Threads: 11
[2025-11-25 18:42:33] Checking for CVMFS
[2025-11-25 18:42:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:42:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:42:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:42:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:42:34] 2.13.3.0 9239 29237 342084 153302 1 241 18135015 32935936 20614 16776704 0 107783169 99.518 128235397 38040 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 18:42:34] CVMFS is ok
[2025-11-25 18:42:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:42:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:42:34] Further information can be found at the LHC@home message board.
[2025-11-25 18:42:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:42:34] Checking for apptainer binary...
[2025-11-25 18:42:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:42:34] Running /usr/bin/apptainer --version
[2025-11-25 18:42:34] apptainer version 1.4.4-1.el9
[2025-11-25 18:42:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:42:34] c6-6-39-3.aglt2.org
[2025-11-25 18:42:34] apptainer works
[2025-11-25 18:42:34] Set ATHENA_PROC_NUMBER=11
[2025-11-25 18:42:34] Set ATHENA_CORE_NUMBER=11
[2025-11-25 18:42:34] Starting ATLAS job with PandaID=6896450861
[2025-11-25 18:42:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:11:15 (2532241): wrapper (7.7.26015): starting
23:11:15 (2532241): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 23:11:15] Arguments: --nthreads 9
[2025-11-25 23:11:15] Threads: 9
[2025-11-25 23:11:15] This job has been restarted, cleaning up previous attempt
[2025-11-25 23:11:15] Checking for CVMFS
[2025-11-25 23:11:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:11:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:11:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:11:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:11:16] 2.13.3.0 9239 29506 345524 153307 1 395 24873954 32935937 16804 16776704 0 109305721 99.516 130227115 37951 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 23:11:16] CVMFS is ok
[2025-11-25 23:11:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:11:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:11:16] Further information can be found at the LHC@home message board.
[2025-11-25 23:11:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:11:16] Checking for apptainer binary...
[2025-11-25 23:11:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:11:16] Running /usr/bin/apptainer --version
[2025-11-25 23:11:16] apptainer version 1.4.4-1.el9
[2025-11-25 23:11:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:11:16] c6-6-39-3.aglt2.org
[2025-11-25 23:11:16] apptainer works
[2025-11-25 23:11:16] Set ATHENA_PROC_NUMBER=9
[2025-11-25 23:11:16] Set ATHENA_CORE_NUMBER=9
[2025-11-25 23:11:16] Starting ATLAS job with PandaID=6896450861
[2025-11-25 23:11:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:16:33]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:16:33] 2025-11-26 22:15:58,867 | INFO     | sum of square deviations: 376704284436.64526
[2025-11-26 17:16:33] 2025-11-26 22:15:58,889 | INFO     | sum of deviations: 3060166115505.519
[2025-11-26 17:16:33] 2025-11-26 22:15:58,890 | INFO     | mean x: 1764162826.7563262
[2025-11-26 17:16:33] 2025-11-26 22:15:58,890 | INFO     | mean y: 3078110.9597000936
[2025-11-26 17:16:33] 2025-11-26 22:15:58,890 | INFO     | intersect: -14328140109.049936
[2025-11-26 17:16:33] 2025-11-26 22:15:58,891 | INFO     | chi2: 6.605240384036078
[2025-11-26 17:16:33] 2025-11-26 22:15:58,920 | INFO     | sum of square deviations: 371434561650.9795
[2025-11-26 17:16:33] 2025-11-26 22:15:59,016 | INFO     | sum of deviations: 3473404488330.012
[2025-11-26 17:16:33] 2025-11-26 22:15:59,017 | INFO     | mean x: 1764162674.269303
[2025-11-26 17:16:33] 2025-11-26 22:15:59,017 | INFO     | mean y: 3090068.3286252352
[2025-11-26 17:16:33] 2025-11-26 22:15:59,017 | INFO     | intersect: -16494164585.935764
[2025-11-26 17:16:33] 2025-11-26 22:15:59,027 | INFO     | chi2: 2.96857171589599
[2025-11-26 17:16:33] 2025-11-26 22:15:59,027 | INFO     | current chi2=2.96857171589599 (change=55.05732504345181 %)
[2025-11-26 17:16:33] 2025-11-26 22:15:59,028 | INFO     | sum of square deviations: 366214105827.0776
[2025-11-26 17:16:33] 2025-11-26 22:15:59,101 | INFO     | sum of deviations: 3650571078603.6484
[2025-11-26 17:16:33] 2025-11-26 22:15:59,102 | INFO     | mean x: 1764162521.780511
[2025-11-26 17:16:33] 2025-11-26 22:15:59,102 | INFO     | mean y: 3095240.2743614004
[2025-11-26 17:16:33] 2025-11-26 22:15:59,102 | INFO     | intersect: -17582793936.28676
[2025-11-26 17:16:33] 2025-11-26 22:15:59,103 | INFO     | chi2: 2.0759573231120076
[2025-11-26 17:16:33] 2025-11-26 22:15:59,103 | INFO     | current chi2=2.0759573231120076 (change=30.06881686584313 %)
[2025-11-26 17:16:33] 2025-11-26 22:15:59,104 | INFO     | sum of square deviations: 361038877070.4749
[2025-11-26 17:16:33] 2025-11-26 22:15:59,157 | INFO     | monitor loop #3875: job 0:6896450861 is in state 'finished'
[2025-11-26 17:16:33] 2025-11-26 22:15:59,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:16:33] 2025-11-26 22:15:59,170 | INFO     | sum of deviations: 3631132964461.885
[2025-11-26 17:16:33] 2025-11-26 22:15:59,170 | INFO     | mean x: 1764162369.2338402
[2025-11-26 17:16:33] 2025-11-26 22:15:59,170 | INFO     | mean y: 3094664.963878327
[2025-11-26 17:16:33] 2025-11-26 22:15:59,170 | INFO     | intersect: -17739892421.542435
[2025-11-26 17:16:33] 2025-11-26 22:15:59,171 | INFO     | chi2: 2.036949103197406
[2025-11-26 17:16:33] 2025-11-26 22:15:59,171 | INFO     | current chi2=2.036949103197406 (change=1.879047294485104 %)
[2025-11-26 17:16:33] 2025-11-26 22:15:59,172 | INFO     | right removable region: 1051
[2025-11-26 17:16:33] 2025-11-26 22:15:59,173 | INFO     | sum of square deviations: 371432897458.05237
[2025-11-26 17:16:33] 2025-11-26 22:15:59,242 | INFO     | sum of deviations: 2783995822927.8936
[2025-11-26 17:16:33] 2025-11-26 22:15:59,242 | INFO     | mean x: 1764162979.26742
[2025-11-26 17:16:33] 2025-11-26 22:15:59,242 | INFO     | mean y: 3086089.8841807907
[2025-11-26 17:16:33] 2025-11-26 22:15:59,243 | INFO     | intersect: -13219820117.014727
[2025-11-26 17:16:33] 2025-11-26 22:15:59,244 | INFO     | chi2: 4.804168785129639
[2025-11-26 17:16:33] 2025-11-26 22:15:59,244 | INFO     | current chi2=4.804168785129639 (change=27.267313438877583 %)
[2025-11-26 17:16:33] 2025-11-26 22:15:59,253 | INFO     | sum of square deviations: 366211101111.86053
[2025-11-26 17:16:33] 2025-11-26 22:15:59,318 | INFO     | sum of deviations: 2683422458626.634
[2025-11-26 17:16:33] 2025-11-26 22:15:59,318 | INFO     | mean x: 1764163131.7757804
[2025-11-26 17:16:33] 2025-11-26 22:15:59,319 | INFO     | mean y: 3089026.563859981
[2025-11-26 17:16:33] 2025-11-26 22:15:59,319 | INFO     | intersect: -12923867458.68537
[2025-11-26 17:16:33] 2025-11-26 22:15:59,320 | INFO     | chi2: 4.724470643705548
[2025-11-26 17:16:33] 2025-11-26 22:15:59,320 | INFO     | current chi2=4.724470643705548 (change=1.658937164547206 %)
[2025-11-26 17:16:33] 2025-11-26 22:15:59,320 | INFO     | left removable region: 20
[2025-11-26 17:16:33] 2025-11-26 22:15:59,334 | INFO     | sum of square deviations: 339845540283.89417
[2025-11-26 17:16:33] 2025-11-26 22:15:59,413 | INFO     | sum of deviations: 3100920181888.987
[2025-11-26 17:16:33] 2025-11-26 22:15:59,414 | INFO     | mean x: 1764162948.756547
[2025-11-26 17:16:33] 2025-11-26 22:15:59,414 | INFO     | mean y: 3110138.8166828323
[2025-11-26 17:16:33] 2025-11-26 22:15:59,414 | INFO     | intersect: -16093992348.890203
[2025-11-26 17:16:33] 2025-11-26 22:15:59,415 | INFO     | chi2: 0.10147454646921006
[2025-11-26 17:16:33] 2025-11-26 22:15:59,415 | INFO     | current memory leak: 9.12 B/s (using 1031 data points, chi2=0.10)
[2025-11-26 17:16:33] 2025-11-26 22:15:59,417 | INFO     | could have reported an average CPU frequency of 2947 MHz (39 samples)
[2025-11-26 17:16:33] 2025-11-26 22:15:59,417 | INFO     | ..............................
[2025-11-26 17:16:33] 2025-11-26 22:15:59,417 | INFO     | . Timing measurements:
[2025-11-26 17:16:33] 2025-11-26 22:15:59,417 | INFO     | . get job = 0 s
[2025-11-26 17:16:33] 2025-11-26 22:15:59,429 | INFO     | . initial setup = 2 s
[2025-11-26 17:16:33] 2025-11-26 22:15:59,429 | INFO     | . payload setup = 5 s
[2025-11-26 17:16:33] 2025-11-26 22:15:59,430 | INFO     | . stage-in = 0 s
[2025-11-26 17:16:33] 2025-11-26 22:15:59,430 | INFO     | . payload execution = 65032 s
[2025-11-26 17:16:33] 2025-11-26 22:15:59,430 | INFO     | . stage-out = 7 s
[2025-11-26 17:16:33] 2025-11-26 22:15:59,430 | INFO     | . log creation = 1 s
[2025-11-26 17:16:33] 2025-11-26 22:15:59,430 | INFO     | ..............................
[2025-11-26 17:16:33] 2025-11-26 22:15:59,816 | INFO     | 
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | job summary report
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | --------------------------------------------------
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | PanDA job id: 6896450861
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | task id: 47556149
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | errors: (none)
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | pilot state: finished 
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | transexitcode: 0
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | exeerrorcode: 0
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | exeerrordiag: 
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | exitcode: 0
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | exitmsg: OK
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | cpuconsumptiontime: 243929 s
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | nevents: 1000
[2025-11-26 17:16:33] 2025-11-26 22:15:59,817 | INFO     | neventsw: 0
[2025-11-26 17:16:33] 2025-11-26 22:15:59,818 | INFO     | pid: 2573498
[2025-11-26 17:16:33] 2025-11-26 22:15:59,818 | INFO     | pgrp: 2573498
[2025-11-26 17:16:33] 2025-11-26 22:15:59,818 | INFO     | corecount: 9
[2025-11-26 17:16:33] 2025-11-26 22:15:59,818 | INFO     | event service: False
[2025-11-26 17:16:33] 2025-11-26 22:15:59,818 | INFO     | sizes: {0: 2284315, 4: 2284577, 11: 2284605, 65039: 2339407, 65047: 2348401, 65050: 2348457, 65060: 2348831}
[2025-11-26 17:16:33] 2025-11-26 22:15:59,818 | INFO     | --------------------------------------------------
[2025-11-26 17:16:33] 2025-11-26 22:15:59,818 | INFO     | 
[2025-11-26 17:16:33] 2025-11-26 22:15:59,818 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 17:16:33] 2025-11-26 22:15:59,876 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,877 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,877 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,877 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,877 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,877 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,877 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,877 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,877 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:16:33] 2025-11-26 22:15:59,878 | INFO     | job 6896450861 has completed (purged errors)
[2025-11-26 17:16:33] 2025-11-26 22:15:59,879 | INFO     | overall cleanup function is called
[2025-11-26 17:16:33] 2025-11-26 22:16:00,910 | INFO     | --- collectZombieJob: --- 10, [2573498]
[2025-11-26 17:16:33] 2025-11-26 22:16:00,910 | INFO     | zombie collector waiting for pid 2573498
[2025-11-26 17:16:33] 2025-11-26 22:16:00,911 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:16:33] 2025-11-26 22:16:00,911 | INFO     | collected zombie processes
[2025-11-26 17:16:33] 2025-11-26 22:16:00,911 | INFO     | will attempt to kill all subprocesses of pid=2573498
[2025-11-26 17:16:33] 2025-11-26 22:16:02,242 | INFO     | process IDs to be killed: [2573498] (in reverse order)
[2025-11-26 17:16:33] 2025-11-26 22:16:02,451 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:16:33] 2025-11-26 22:16:02,451 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:16:33] 2025-11-26 22:16:02,468 | INFO     | did not find any defunct processes belonging to 2573498
[2025-11-26 17:16:33] 2025-11-26 22:16:02,513 | INFO     | did not find any defunct processes belonging to 2573498
[2025-11-26 17:16:33] 2025-11-26 22:16:02,534 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:16:33] 2025-11-26 22:16:02,541 | INFO     | ready for new job
[2025-11-26 17:16:33] 2025-11-26 22:16:02,542 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:16:33] 2025-11-26 22:16:02,552 | INFO     | ***************************************
[2025-11-26 17:16:33] 2025-11-26 22:16:02,552 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:16:33] 2025-11-26 22:16:02,552 | INFO     | ***************************************
[2025-11-26 17:16:33] 2025-11-26 22:16:02,552 | INFO     | 
[2025-11-26 17:16:33] 2025-11-26 22:16:02,556 | INFO     | architecture information:
[2025-11-26 17:16:33] 2025-11-26 22:16:02,557 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:16:33] 2025-11-26 22:16:02,611 | INFO     | cat /etc/os-release:
[2025-11-26 17:16:33] NAME="CentOS Linux"
[2025-11-26 17:16:33] VERSION="7 (Core)"
[2025-11-26 17:16:33] ID="centos"
[2025-11-26 17:16:33] ID_LIKE="rhel fedora"
[2025-11-26 17:16:33] VERSION_ID="7"
[2025-11-26 17:16:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:16:33] ANSI_COLOR="0;31"
[2025-11-26 17:16:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:16:33] HOME_URL="https://www.centos.org/"
[2025-11-26 17:16:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:16:33] 
[2025-11-26 17:16:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:16:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:16:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:16:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:16:33] 
[2025-11-26 17:16:33] 2025-11-26 22:16:02,611 | INFO     | ***************************************
[2025-11-26 17:16:33] 2025-11-26 22:16:03,118 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 17:16:33] 2025-11-26 22:16:03,150 | INFO     | sufficient remaining disk space (66984083456 B)
[2025-11-26 17:16:33] 2025-11-26 22:16:03,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:16:33] 2025-11-26 22:16:03,152 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:16:33] 2025-11-26 22:16:03,152 | INFO     | update_server=False
[2025-11-26 17:16:33] 2025-11-26 22:16:03,152 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:16:33] 2025-11-26 22:16:03,153 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:16:33] 2025-11-26 22:16:03,155 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:16:33] 2025-11-26 22:16:03,155 | INFO     | aborting loop
[2025-11-26 17:16:33] 2025-11-26 22:16:04,121 | INFO     | all job control threads have been joined
[2025-11-26 17:16:33] 2025-11-26 22:16:04,160 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:04,164 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:04,212 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:04,253 | INFO     | all data control threads have been joined
[2025-11-26 17:16:33] 2025-11-26 22:16:04,459 | INFO     | all payload control threads have been joined
[2025-11-26 17:16:33] 2025-11-26 22:16:04,502 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:04,663 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:04,672 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:04,837 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:16:33] 2025-11-26 22:16:04,984 | INFO     | [job] validate thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:05,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:16:33] 2025-11-26 22:16:05,127 | INFO     | [job] control thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:05,160 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:05,259 | INFO     | [data] control thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:05,465 | INFO     | [payload] control thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:05,469 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:05,665 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:05,843 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:09,122 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:14,138 | INFO     | job.realtimelogging is not enabled
[2025-11-26 17:16:33] 2025-11-26 22:16:15,155 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:16:33] 2025-11-26 22:16:22,691 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:16:33] 2025-11-26 22:16:23,704 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139808232458048)>', '<ExcThread(monitor, started 139807720187648)>']
[2025-11-26 17:16:33] 2025-11-26 22:16:28,730 | INFO     | all workflow threads have been joined
[2025-11-26 17:16:33] 2025-11-26 22:16:28,730 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:16:33] 2025-11-26 22:16:28,731 | INFO     | traces error code: 0
[2025-11-26 17:16:33] 2025-11-26 22:16:28,731 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:16:33] 2025-11-26 22:16:32,100 | INFO     | PID=2547325 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 17:16:33] 2025-11-26 22:16:32,100 | INFO     | .. there are 32 such processes running
[2025-11-26 17:16:33] 2025-11-26 22:16:32,103 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:16:33] 2025-11-26 22:16:32,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:16:33] 2025-11-26 22:16:32,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:16:33] 2025-11-26 22:16:32,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:16:33] 2025-11-26 22:16:32,104 | INFO     | [monitor] control thread has ended
[2025-11-26 17:16:33] 2025-11-26 22:16:32,733 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:16:33] 2025-11-26 22:16:32,736 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:16:33] 2025-11-26 22:16:32,739 [wrapper] pilotpid: 2547325
[2025-11-26 17:16:33] 2025-11-26 22:16:32,741 [wrapper] Pilot exit status: 0
[2025-11-26 17:16:33] 2025-11-26 22:16:32,760 [wrapper] pandaids: 6896450861 6896450861
[2025-11-26 17:16:33] 2025-11-26 22:16:32,843 [wrapper] cleanup supervisor_pilot 2175938 2547327
[2025-11-26 17:16:33] 2025-11-26 22:16:32,849 [wrapper] Test setup, not cleaning
[2025-11-26 17:16:33] 2025-11-26 22:16:32,852 [wrapper] apfmon messages muted
[2025-11-26 17:16:33] 2025-11-26 22:16:32,860 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:16:33] 2025-11-26 22:16:32,864 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:16:33]  *** Error codes and diagnostics ***
[2025-11-26 17:16:33]     "exeErrorCode": 0,
[2025-11-26 17:16:33]     "exeErrorDiag": "",
[2025-11-26 17:16:33]     "pilotErrorCode": 0,
[2025-11-26 17:16:33]     "pilotErrorDiag": "",
[2025-11-26 17:16:33]  *** Listing of results directory ***
[2025-11-26 17:16:33] total 1720296
[2025-11-26 17:16:33] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 17:16:33] -rwx------. 1 boincer umatlas     36292 Nov 24 23:10 runpilot2-wrapper.sh
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:10 queuedata.json
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas       100 Nov 25 18:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:16:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 18:42 run_atlas
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas       105 Nov 25 18:42 job.xml
[2025-11-26 17:16:33] -rw-r--r--. 3 boincer umatlas 410396140 Nov 25 18:42 EVNT.47483658._001502.pool.root.1
[2025-11-26 17:16:33] -rw-r--r--. 3 boincer umatlas 410396140 Nov 25 18:42 ATLAS.root_0
[2025-11-26 17:16:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:42 start_atlas.sh
[2025-11-26 17:16:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 18:42 shared
[2025-11-26 17:16:33] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 18:42 input.tar.gz
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas         0 Nov 25 18:42 boinc_lockfile
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 23:11 pandaJob.out
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas        57 Nov 25 23:11 setup.sh.local
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas    991877 Nov 25 23:11 agis_schedconf.cvmfs.json
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas       533 Nov 26 17:05 boinc_task_state.xml
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 17:11 init_data.xml
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas 915868573 Nov 26 17:15 HITS.47556149._004887.pool.root.1
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas      1058 Nov 26 17:15 memory_monitor_summary.json
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas   1516240 Nov 26 17:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas   2291955 Nov 26 17:15 log.47556149._004887.job.log.tgz.1
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas      8620 Nov 26 17:15 heartbeat.json
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 17:16 boinc_mmap_file
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas        29 Nov 26 17:16 wrapper_checkpoint.txt
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas        96 Nov 26 17:16 pilot_heartbeat.json
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas       823 Nov 26 17:16 pilotlog.txt
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas   8206328 Nov 26 17:16 log.47556149._004887.job.log.1
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas       353 Nov 26 17:16 output.list
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas       620 Nov 26 17:16 runtime_log
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas  10516480 Nov 26 17:16 result.tar.gz
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas      9433 Nov 26 17:16 runtime_log.err
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas       786 Nov 26 17:16 ch2KDmMZzh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVJJKDmF3mPom.diag
[2025-11-26 17:16:33] -rw-r--r--. 1 boincer umatlas     23351 Nov 26 17:16 stderr.txt
[2025-11-26 17:16:33] HITS file was successfully produced:
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas 915868573 Nov 26 17:15 shared/HITS.pool.root.1
[2025-11-26 17:16:33]  *** Contents of shared directory: ***
[2025-11-26 17:16:33] total 1306060
[2025-11-26 17:16:33] -rw-r--r--. 3 boincer umatlas 410396140 Nov 25 18:42 ATLAS.root_0
[2025-11-26 17:16:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:42 start_atlas.sh
[2025-11-26 17:16:33] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 18:42 input.tar.gz
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas 915868573 Nov 26 17:15 HITS.pool.root.1
[2025-11-26 17:16:33] -rw-------. 1 boincer umatlas  10516480 Nov 26 17:16 result.tar.gz
17:16:34 (2532241): run_atlas exited; CPU time 245560.668883
17:16:34 (2532241): called boinc_finish(0)

</stderr_txt>
]]>

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