Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:45:07 (3711635): wrapper (7.7.26015): starting
19:45:07 (3711635): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:45:07] Arguments: --nthreads 8
[2025-11-25 19:45:07] Threads: 8
[2025-11-25 19:45:07] Checking for CVMFS
[2025-11-25 19:45:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:45:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:45:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:45:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:45:08] 2.13.3.0 9185 29302 308376 153303 3 99 16879285 32935936 27623 16776704 0 161508921 99.778 89457399 31565 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:45:08] CVMFS is ok
[2025-11-25 19:45:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:45:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:45:08] Further information can be found at the LHC@home message board.
[2025-11-25 19:45:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:45:08] Checking for apptainer binary...
[2025-11-25 19:45:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:45:08] Running /usr/bin/apptainer --version
[2025-11-25 19:45:09] apptainer version 1.4.4-1.el9
[2025-11-25 19:45:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:45:09] c-5-6.aglt2.org
[2025-11-25 19:45:09] apptainer works
[2025-11-25 19:45:09] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:45:09] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:45:09] Starting ATLAS job with PandaID=6895882690
[2025-11-25 19:45:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:00:05 (3711635): BOINC client no longer exists - exiting
10:00:05 (3711635): timer handler: client dead, exiting
10:13:07 (2964278): wrapper (7.7.26015): starting
10:13:07 (2964278): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 10:13:07] Arguments: --nthreads 10
[2025-11-26 10:13:07] Threads: 10
[2025-11-26 10:13:07] This job has been restarted, cleaning up previous attempt
[2025-11-26 10:13:07] Checking for CVMFS
[2025-11-26 10:13:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 10:13:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 10:13:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 10:13:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 10:13:07] 2.13.3.0 9185 30170 307928 153325 1 120 30540432 32935936 23950 16776704 0 166258823 99.776 93037875 31649 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 10:13:07] CVMFS is ok
[2025-11-26 10:13:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 10:13:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 10:13:07] Further information can be found at the LHC@home message board.
[2025-11-26 10:13:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 10:13:07] Checking for apptainer binary...
[2025-11-26 10:13:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 10:13:07] Running /usr/bin/apptainer --version
[2025-11-26 10:13:07] apptainer version 1.4.4-1.el9
[2025-11-26 10:13:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 10:13:08] c-5-6.aglt2.org
[2025-11-26 10:13:08] apptainer works
[2025-11-26 10:13:08] Set ATHENA_PROC_NUMBER=10
[2025-11-26 10:13:08] Set ATHENA_CORE_NUMBER=10
[2025-11-26 10:13:08] Starting ATLAS job with PandaID=6895882690
[2025-11-26 10:13:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:29:11]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:29:11] 2025-11-27 04:28:38,543 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:29:11] 2025-11-27 04:28:38,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:29:11] 2025-11-27 04:28:38,560 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:29:11] 2025-11-27 04:28:38,562 | INFO     | sum of square deviations: 148281102234.84918
[2025-11-26 23:29:11] 2025-11-27 04:28:38,580 | INFO     | sum of deviations: 1653305126253.9714
[2025-11-26 23:29:11] 2025-11-27 04:28:38,580 | INFO     | mean x: 1764193844.9616368
[2025-11-26 23:29:11] 2025-11-27 04:28:38,580 | INFO     | mean y: 3250766.898976982
[2025-11-26 23:29:11] 2025-11-27 04:28:38,580 | INFO     | intersect: -19667163625.902054
[2025-11-26 23:29:11] 2025-11-27 04:28:38,581 | INFO     | chi2: 7.2667555957808885
[2025-11-26 23:29:11] 2025-11-27 04:28:38,583 | INFO     | sum of square deviations: 145455249011.5987
[2025-11-26 23:29:11] 2025-11-27 04:28:38,598 | INFO     | sum of deviations: 1963212479067.136
[2025-11-26 23:29:11] 2025-11-27 04:28:38,598 | INFO     | mean x: 1764193692.4710424
[2025-11-26 23:29:11] 2025-11-27 04:28:38,599 | INFO     | mean y: 3267490.117117117
[2025-11-26 23:29:11] 2025-11-27 04:28:38,599 | INFO     | intersect: -23808090959.20566
[2025-11-26 23:29:11] 2025-11-27 04:28:38,600 | INFO     | chi2: 3.7699257837390525
[2025-11-26 23:29:11] 2025-11-27 04:28:38,600 | INFO     | current chi2=3.7699257837390525 (change=48.12092227337481 %)
[2025-11-26 23:29:11] 2025-11-27 04:28:38,601 | INFO     | sum of square deviations: 142665536000.70724
[2025-11-26 23:29:11] 2025-11-27 04:28:38,616 | INFO     | sum of deviations: 2150997688103.5608
[2025-11-26 23:29:11] 2025-11-27 04:28:38,617 | INFO     | mean x: 1764193539.9805698
[2025-11-26 23:29:11] 2025-11-27 04:28:38,617 | INFO     | mean y: 3277740.7707253885
[2025-11-26 23:29:11] 2025-11-27 04:28:38,617 | INFO     | intersect: -26595831842.68628
[2025-11-26 23:29:11] 2025-11-27 04:28:38,618 | INFO     | chi2: 2.152950684399131
[2025-11-26 23:29:11] 2025-11-27 04:28:38,618 | INFO     | current chi2=2.152950684399131 (change=42.89143055055552 %)
[2025-11-26 23:29:11] 2025-11-27 04:28:38,619 | INFO     | sum of square deviations: 139911495189.5459
[2025-11-26 23:29:11] 2025-11-27 04:28:38,634 | INFO     | sum of deviations: 2162028148337.4426
[2025-11-26 23:29:11] 2025-11-27 04:28:38,635 | INFO     | mean x: 1764193387.4837027
[2025-11-26 23:29:11] 2025-11-27 04:28:38,635 | INFO     | mean y: 3278346.915254237
[2025-11-26 23:29:11] 2025-11-27 04:28:38,635 | INFO     | intersect: -27258497089.643356
[2025-11-26 23:29:11] 2025-11-27 04:28:38,636 | INFO     | chi2: 2.062583074041561
[2025-11-26 23:29:11] 2025-11-27 04:28:38,636 | INFO     | current chi2=2.062583074041561 (change=4.197384130179958 %)
[2025-11-26 23:29:11] 2025-11-27 04:28:38,636 | INFO     | right removable region: 766
[2025-11-26 23:29:11] 2025-11-27 04:28:38,638 | INFO     | sum of square deviations: 145454646823.47748
[2025-11-26 23:29:11] 2025-11-27 04:28:38,655 | INFO     | sum of deviations: 1434809078210.8818
[2025-11-26 23:29:11] 2025-11-27 04:28:38,655 | INFO     | mean x: 1764193997.4684684
[2025-11-26 23:29:11] 2025-11-27 04:28:38,656 | INFO     | mean y: 3262534.036036036
[2025-11-26 23:29:11] 2025-11-27 04:28:38,656 | INFO     | intersect: -17399286085.56802
[2025-11-26 23:29:11] 2025-11-27 04:28:38,657 | INFO     | chi2: 5.393726635425753
[2025-11-26 23:29:11] 2025-11-27 04:28:38,657 | INFO     | current chi2=5.393726635425753 (change=25.775312457771726 %)
[2025-11-26 23:29:11] 2025-11-27 04:28:38,658 | INFO     | sum of square deviations: 142664474187.37323
[2025-11-26 23:29:11] 2025-11-27 04:28:38,674 | INFO     | sum of deviations: 1363754515148.1846
[2025-11-26 23:29:11] 2025-11-27 04:28:38,674 | INFO     | mean x: 1764194149.9715025
[2025-11-26 23:29:11] 2025-11-27 04:28:38,674 | INFO     | mean y: 3266416.781088083
[2025-11-26 23:29:11] 2025-11-27 04:28:38,674 | INFO     | intersect: -16860972219.54363
[2025-11-26 23:29:11] 2025-11-27 04:28:38,675 | INFO     | chi2: 5.333641040787092
[2025-11-26 23:29:11] 2025-11-27 04:28:38,676 | INFO     | current chi2=5.333641040787092 (change=1.1139903576874186 %)
[2025-11-26 23:29:11] 2025-11-27 04:28:38,676 | INFO     | left removable region: 20
[2025-11-26 23:29:11] 2025-11-27 04:28:38,677 | INFO     | sum of square deviations: 128730338314.99838
[2025-11-26 23:29:11] 2025-11-27 04:28:38,692 | INFO     | sum of deviations: 1755360244931.5618
[2025-11-26 23:29:11] 2025-11-27 04:28:38,692 | INFO     | mean x: 1764193967.0013404
[2025-11-26 23:29:11] 2025-11-27 04:28:38,693 | INFO     | mean y: 3300662.4383378015
[2025-11-26 23:29:11] 2025-11-27 04:28:38,693 | INFO     | intersect: -24053157159.06222
[2025-11-26 23:29:11] 2025-11-27 04:28:38,694 | INFO     | chi2: 0.0664757622881477
[2025-11-26 23:29:11] 2025-11-27 04:28:38,694 | INFO     | current memory leak: 13.64 B/s (using 746 data points, chi2=0.07)
[2025-11-26 23:29:11] 2025-11-27 04:28:38,695 | INFO     | could have reported an average CPU frequency of 2600 MHz (29 samples)
[2025-11-26 23:29:11] 2025-11-27 04:28:38,695 | INFO     | ..............................
[2025-11-26 23:29:11] 2025-11-27 04:28:38,696 | INFO     | . Timing measurements:
[2025-11-26 23:29:11] 2025-11-27 04:28:38,696 | INFO     | . get job = 0 s
[2025-11-26 23:29:11] 2025-11-27 04:28:38,696 | INFO     | . initial setup = 2 s
[2025-11-26 23:29:11] 2025-11-27 04:28:38,696 | INFO     | . payload setup = 5 s
[2025-11-26 23:29:11] 2025-11-27 04:28:38,696 | INFO     | . stage-in = 0 s
[2025-11-26 23:29:11] 2025-11-27 04:28:38,696 | INFO     | . payload execution = 47675 s
[2025-11-26 23:29:11] 2025-11-27 04:28:38,696 | INFO     | . stage-out = 4 s
[2025-11-26 23:29:11] 2025-11-27 04:28:38,696 | INFO     | . log creation = 1 s
[2025-11-26 23:29:11] 2025-11-27 04:28:38,696 | INFO     | ..............................
[2025-11-26 23:29:11] 2025-11-27 04:28:38,804 | INFO     | 
[2025-11-26 23:29:11] 2025-11-27 04:28:38,804 | INFO     | job summary report
[2025-11-26 23:29:11] 2025-11-27 04:28:38,805 | INFO     | --------------------------------------------------
[2025-11-26 23:29:11] 2025-11-27 04:28:38,805 | INFO     | PanDA job id: 6895882690
[2025-11-26 23:29:11] 2025-11-27 04:28:38,805 | INFO     | task id: 47556149
[2025-11-26 23:29:11] 2025-11-27 04:28:38,805 | INFO     | errors: (none)
[2025-11-26 23:29:11] 2025-11-27 04:28:38,805 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:29:11] 2025-11-27 04:28:38,805 | INFO     | pilot state: finished 
[2025-11-26 23:29:11] 2025-11-27 04:28:38,805 | INFO     | transexitcode: 0
[2025-11-26 23:29:11] 2025-11-27 04:28:38,805 | INFO     | exeerrorcode: 0
[2025-11-26 23:29:11] 2025-11-27 04:28:38,805 | INFO     | exeerrordiag: 
[2025-11-26 23:29:11] 2025-11-27 04:28:38,806 | INFO     | exitcode: 0
[2025-11-26 23:29:11] 2025-11-27 04:28:38,806 | INFO     | exitmsg: OK
[2025-11-26 23:29:11] 2025-11-27 04:28:38,806 | INFO     | cpuconsumptiontime: 300757 s
[2025-11-26 23:29:11] 2025-11-27 04:28:38,806 | INFO     | nevents: 1000
[2025-11-26 23:29:11] 2025-11-27 04:28:38,806 | INFO     | neventsw: 0
[2025-11-26 23:29:11] 2025-11-27 04:28:38,806 | INFO     | pid: 2995471
[2025-11-26 23:29:11] 2025-11-27 04:28:38,806 | INFO     | pgrp: 2995471
[2025-11-26 23:29:11] 2025-11-27 04:28:38,806 | INFO     | corecount: 10
[2025-11-26 23:29:11] 2025-11-27 04:28:38,807 | INFO     | event service: False
[2025-11-26 23:29:11] 2025-11-27 04:28:38,807 | INFO     | sizes: {0: 2284200, 1: 2284342, 4: 2284604, 11: 2284632, 47685: 2332557, 47689: 2341551, 47693: 2341735, 47706: 2341981}
[2025-11-26 23:29:11] 2025-11-27 04:28:38,807 | INFO     | --------------------------------------------------
[2025-11-26 23:29:11] 2025-11-27 04:28:38,807 | INFO     | 
[2025-11-26 23:29:11] 2025-11-27 04:28:38,807 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 23:29:11] 2025-11-27 04:28:38,942 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,943 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,943 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,943 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,943 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,943 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,943 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,943 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,944 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,944 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,944 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,944 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,944 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,944 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,944 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,944 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,944 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,945 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:29:11] 2025-11-27 04:28:38,945 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,945 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:29:11] 2025-11-27 04:28:38,945 | INFO     | job 6895882690 has completed (purged errors)
[2025-11-26 23:29:11] 2025-11-27 04:28:38,945 | INFO     | overall cleanup function is called
[2025-11-26 23:29:11] 2025-11-27 04:28:39,963 | INFO     | --- collectZombieJob: --- 10, [2995471]
[2025-11-26 23:29:11] 2025-11-27 04:28:39,963 | INFO     | zombie collector waiting for pid 2995471
[2025-11-26 23:29:11] 2025-11-27 04:28:39,964 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:29:11] 2025-11-27 04:28:39,964 | INFO     | collected zombie processes
[2025-11-26 23:29:11] 2025-11-27 04:28:39,964 | INFO     | will attempt to kill all subprocesses of pid=2995471
[2025-11-26 23:29:11] 2025-11-27 04:28:40,431 | INFO     | process IDs to be killed: [2995471] (in reverse order)
[2025-11-26 23:29:11] 2025-11-27 04:28:40,576 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:29:11] 2025-11-27 04:28:40,576 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:29:11] 2025-11-27 04:28:40,597 | INFO     | did not find any defunct processes belonging to 2995471
[2025-11-26 23:29:11] 2025-11-27 04:28:40,623 | INFO     | did not find any defunct processes belonging to 2995471
[2025-11-26 23:29:11] 2025-11-27 04:28:40,625 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:29:11] 2025-11-27 04:28:40,625 | INFO     | ready for new job
[2025-11-26 23:29:11] 2025-11-27 04:28:40,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:29:11] 2025-11-27 04:28:40,629 | INFO     | ***************************************
[2025-11-26 23:29:11] 2025-11-27 04:28:40,629 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:29:11] 2025-11-27 04:28:40,629 | INFO     | ***************************************
[2025-11-26 23:29:11] 2025-11-27 04:28:40,629 | INFO     | 
[2025-11-26 23:29:11] 2025-11-27 04:28:40,631 | INFO     | architecture information:
[2025-11-26 23:29:11] 2025-11-27 04:28:40,632 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:29:11] 2025-11-27 04:28:40,648 | INFO     | cat /etc/os-release:
[2025-11-26 23:29:11] NAME="CentOS Linux"
[2025-11-26 23:29:11] VERSION="7 (Core)"
[2025-11-26 23:29:11] ID="centos"
[2025-11-26 23:29:11] ID_LIKE="rhel fedora"
[2025-11-26 23:29:11] VERSION_ID="7"
[2025-11-26 23:29:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:29:11] ANSI_COLOR="0;31"
[2025-11-26 23:29:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:29:11] HOME_URL="https://www.centos.org/"
[2025-11-26 23:29:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:29:11] 
[2025-11-26 23:29:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:29:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:29:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:29:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:29:11] 
[2025-11-26 23:29:11] 2025-11-27 04:28:40,648 | INFO     | ***************************************
[2025-11-26 23:29:11] 2025-11-27 04:28:41,152 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 23:29:11] 2025-11-27 04:28:41,346 | INFO     | sufficient remaining disk space (71413268480 B)
[2025-11-26 23:29:11] 2025-11-27 04:28:41,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:29:11] 2025-11-27 04:28:41,346 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:29:11] 2025-11-27 04:28:41,346 | INFO     | update_server=False
[2025-11-26 23:29:11] 2025-11-27 04:28:41,347 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:29:11] 2025-11-27 04:28:41,347 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:29:11] 2025-11-27 04:28:41,350 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:29:11] 2025-11-27 04:28:41,353 | INFO     | all data control threads have been joined
[2025-11-26 23:29:11] 2025-11-27 04:28:41,591 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:29:11] 2025-11-27 04:28:41,592 | INFO     | aborting loop
[2025-11-26 23:29:11] 2025-11-27 04:28:42,020 | INFO     | all payload control threads have been joined
[2025-11-26 23:29:11] 2025-11-27 04:28:42,360 | INFO     | [data] control thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:42,362 | INFO     | [job] validate thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:42,365 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:42,390 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:29:11] 2025-11-27 04:28:42,597 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:42,637 | INFO     | all job control threads have been joined
[2025-11-26 23:29:11] 2025-11-27 04:28:42,865 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:43,026 | INFO     | [payload] control thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:43,106 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:43,236 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:43,354 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:43,357 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:43,361 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:43,424 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:43,645 | INFO     | [job] control thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:43,813 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:43,830 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:29:11] 2025-11-27 04:28:44,836 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:45,365 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:29:11] 2025-11-27 04:28:46,552 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140273215735616)>', '<ExcThread(monitor, started 140272717506304)>']
[2025-11-26 23:29:11] 2025-11-27 04:28:51,578 | INFO     | all workflow threads have been joined
[2025-11-26 23:29:11] 2025-11-27 04:28:51,580 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:29:11] 2025-11-27 04:28:51,580 | INFO     | traces error code: 0
[2025-11-26 23:29:11] 2025-11-27 04:28:51,581 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:29:11] 2025-11-27 04:29:10,893 | INFO     | PID=2975914 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:29:11] 2025-11-27 04:29:10,894 | INFO     | .. there are 41 such processes running
[2025-11-26 23:29:11] 2025-11-27 04:29:10,894 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:29:11] 2025-11-27 04:29:10,894 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:29:11] 2025-11-27 04:29:10,894 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:29:11] 2025-11-27 04:29:10,894 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:29:11] 2025-11-27 04:29:10,894 | INFO     | [monitor] control thread has ended
[2025-11-26 23:29:11] 2025-11-27 04:29:11,078 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:29:11] 2025-11-27 04:29:11,082 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:29:11] 2025-11-27 04:29:11,088 [wrapper] pilotpid: 2975914
[2025-11-26 23:29:11] 2025-11-27 04:29:11,095 [wrapper] Pilot exit status: 0
[2025-11-26 23:29:11] 2025-11-27 04:29:11,124 [wrapper] pandaids: 6895882690 6895882690
[2025-11-26 23:29:11] 2025-11-27 04:29:11,208 [wrapper] cleanup supervisor_pilot 2088066 2975915
[2025-11-26 23:29:11] 2025-11-27 04:29:11,213 [wrapper] Test setup, not cleaning
[2025-11-26 23:29:11] 2025-11-27 04:29:11,218 [wrapper] apfmon messages muted
[2025-11-26 23:29:11] 2025-11-27 04:29:11,221 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:29:11] 2025-11-27 04:29:11,224 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:29:11]  *** Error codes and diagnostics ***
[2025-11-26 23:29:11]     "exeErrorCode": 0,
[2025-11-26 23:29:11]     "exeErrorDiag": "",
[2025-11-26 23:29:11]     "pilotErrorCode": 0,
[2025-11-26 23:29:11]     "pilotErrorDiag": "",
[2025-11-26 23:29:11]  *** Listing of results directory ***
[2025-11-26 23:29:11] total 1728552
[2025-11-26 23:29:11] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 11:37 queuedata.json
[2025-11-26 23:29:11] -rwx------. 1 boincer umatlas     36292 Nov 24 11:39 runpilot2-wrapper.sh
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:29:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:45 run_atlas
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:45 job.xml
[2025-11-26 23:29:11] -rw-r--r--. 3 boincer umatlas 411749681 Nov 25 19:45 EVNT.47483658._001387.pool.root.1
[2025-11-26 23:29:11] -rw-r--r--. 3 boincer umatlas 411749681 Nov 25 19:45 ATLAS.root_0
[2025-11-26 23:29:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:45 start_atlas.sh
[2025-11-26 23:29:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:45 shared
[2025-11-26 23:29:11] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 19:45 input.tar.gz
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:45 boinc_lockfile
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 10:13 pandaJob.out
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas        57 Nov 26 10:13 setup.sh.local
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas    992360 Nov 26 10:13 agis_schedconf.cvmfs.json
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas       533 Nov 26 23:13 boinc_task_state.xml
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas      6660 Nov 26 23:18 init_data.xml
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas 925739187 Nov 26 23:27 HITS.47556149._003736.pool.root.1
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas      1068 Nov 26 23:28 memory_monitor_summary.json
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas        96 Nov 26 23:28 pilot_heartbeat.json
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:28 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas   2208724 Nov 26 23:28 log.47556149._003736.job.log.tgz.1
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas      8635 Nov 26 23:28 heartbeat.json
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:29 boinc_mmap_file
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:29 wrapper_checkpoint.txt
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas       823 Nov 26 23:29 pilotlog.txt
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas   6228928 Nov 26 23:29 log.47556149._003736.job.log.1
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas       353 Nov 26 23:29 output.list
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:29 runtime_log
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas   8458240 Nov 26 23:29 result.tar.gz
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas      9415 Nov 26 23:29 runtime_log.err
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas       786 Nov 26 23:29 onJKDmamoh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8lLKDmy2z6Pm.diag
[2025-11-26 23:29:11] -rw-r--r--. 1 boincer umatlas     23414 Nov 26 23:29 stderr.txt
[2025-11-26 23:29:11] HITS file was successfully produced:
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas 925739187 Nov 26 23:27 shared/HITS.pool.root.1
[2025-11-26 23:29:11]  *** Contents of shared directory: ***
[2025-11-26 23:29:11] total 1315008
[2025-11-26 23:29:11] -rw-r--r--. 3 boincer umatlas 411749681 Nov 25 19:45 ATLAS.root_0
[2025-11-26 23:29:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:45 start_atlas.sh
[2025-11-26 23:29:11] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 19:45 input.tar.gz
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas 925739187 Nov 26 23:27 HITS.pool.root.1
[2025-11-26 23:29:11] -rw-------. 1 boincer umatlas   8458240 Nov 26 23:29 result.tar.gz
23:29:12 (2964278): run_atlas exited; CPU time 302441.683647
23:29:12 (2964278): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN