Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:54:53 (655307): wrapper (7.7.26015): starting
22:54:53 (655307): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:54:53] Arguments: --nthreads 8
[2025-11-25 22:54:53] Threads: 8
[2025-11-25 22:54:53] Checking for CVMFS
[2025-11-25 22:54:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:54:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:54:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:54:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:54:55] 2.13.3.0 12004 29491 376752 153307 2 505 31232023 32935936 36734 16776704 0 153928020 99.509 182292011 33407 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:54:55] CVMFS is ok
[2025-11-25 22:54:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:54:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:54:55] Further information can be found at the LHC@home message board.
[2025-11-25 22:54:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:54:55] Checking for apptainer binary...
[2025-11-25 22:54:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:54:55] Running /usr/bin/apptainer --version
[2025-11-25 22:54:55] apptainer version 1.4.4-1.el9
[2025-11-25 22:54:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:54:55] c6-12-29-4.aglt2.org
[2025-11-25 22:54:55] apptainer works
[2025-11-25 22:54:55] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:54:55] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:54:55] Starting ATLAS job with PandaID=6895882689
[2025-11-25 22:54:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:16:35]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:16:35] 2025-11-26 19:15:36,802 | INFO     | .. there are 52 such processes running
[2025-11-26 14:16:35] 2025-11-26 19:15:37,143 | INFO     | monitor loop #3266: job 0:6895882689 is in state 'finished'
[2025-11-26 14:16:35] 2025-11-26 19:15:37,144 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:16:35] 2025-11-26 19:15:37,802 | INFO     | time since job start (55188s) is within the limit (172800.0s)
[2025-11-26 14:16:35] 2025-11-26 19:15:39,648 | INFO     | monitor loop #3267: job 0:6895882689 is in state 'finished'
[2025-11-26 14:16:35] 2025-11-26 19:15:39,649 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:16:35] 2025-11-26 19:15:39,808 | INFO     | time since job start (55190s) is within the limit (172800.0s)
[2025-11-26 14:16:35] 2025-11-26 19:15:41,818 | INFO     | time since job start (55192s) is within the limit (172800.0s)
[2025-11-26 14:16:35] 2025-11-26 19:15:42,152 | INFO     | monitor loop #3268: job 0:6895882689 is in state 'finished'
[2025-11-26 14:16:35] 2025-11-26 19:15:42,153 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:16:35] 2025-11-26 19:15:43,848 | INFO     | time since job start (55194s) is within the limit (172800.0s)
[2025-11-26 14:16:35] 2025-11-26 19:15:44,675 | INFO     | monitor loop #3269: job 0:6895882689 is in state 'finished'
[2025-11-26 14:16:35] 2025-11-26 19:15:44,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:16:35] 2025-11-26 19:15:45,874 | INFO     | time since job start (55196s) is within the limit (172800.0s)
[2025-11-26 14:16:35] 2025-11-26 19:15:47,180 | INFO     | monitor loop #3270: job 0:6895882689 is in state 'finished'
[2025-11-26 14:16:35] 2025-11-26 19:15:47,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:16:35] 2025-11-26 19:15:47,881 | INFO     | time since job start (55198s) is within the limit (172800.0s)
[2025-11-26 14:16:35] 2025-11-26 19:15:48,219 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 14:16:35] 2025-11-26 19:15:48,279 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2568.0258645833323
[2025-11-26 14:16:35] 2025-11-26 19:15:48,311 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895882689/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 14:16:35] 2025-11-26 19:15:48,316 | INFO     | extracted standard info from prmon json
[2025-11-26 14:16:35] 2025-11-26 19:15:48,316 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:16:35] 2025-11-26 19:15:48,316 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:16:35] 2025-11-26 19:15:48,331 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:16:35] 2025-11-26 19:15:48,332 | INFO     | sum of square deviations: 228318657640.98972
[2025-11-26 14:16:35] 2025-11-26 19:15:48,349 | INFO     | sum of deviations: 1316523710187.4365
[2025-11-26 14:16:35] 2025-11-26 19:15:48,350 | INFO     | mean x: 1764156977.282392
[2025-11-26 14:16:35] 2025-11-26 19:15:48,350 | INFO     | mean y: 2881192.668881506
[2025-11-26 14:16:35] 2025-11-26 19:15:48,350 | INFO     | intersect: -10169544105.735216
[2025-11-26 14:16:35] 2025-11-26 19:15:48,351 | INFO     | chi2: 12.78614211823614
[2025-11-26 14:16:35] 2025-11-26 19:15:48,353 | INFO     | sum of square deviations: 224547302895.22153
[2025-11-26 14:16:35] 2025-11-26 19:15:48,376 | INFO     | sum of deviations: 1611214219004.57
[2025-11-26 14:16:35] 2025-11-26 19:15:48,376 | INFO     | mean x: 1764156824.7895322
[2025-11-26 14:16:35] 2025-11-26 19:15:48,376 | INFO     | mean y: 2893105.167037862
[2025-11-26 14:16:35] 2025-11-26 19:15:48,376 | INFO     | intersect: -12655618148.389135
[2025-11-26 14:16:35] 2025-11-26 19:15:48,378 | INFO     | chi2: 9.649938818214805
[2025-11-26 14:16:35] 2025-11-26 19:15:48,378 | INFO     | current chi2=9.649938818214805 (change=24.528143602817842 %)
[2025-11-26 14:16:35] 2025-11-26 19:15:48,378 | INFO     | right removable region: 897
[2025-11-26 14:16:35] 2025-11-26 19:15:48,380 | INFO     | sum of square deviations: 224546596515.22162
[2025-11-26 14:16:35] 2025-11-26 19:15:48,407 | INFO     | sum of deviations: 1003994369349.2477
[2025-11-26 14:16:35] 2025-11-26 19:15:48,407 | INFO     | mean x: 1764157129.7895322
[2025-11-26 14:16:35] 2025-11-26 19:15:48,408 | INFO     | mean y: 2893821.302895323
[2025-11-26 14:16:35] 2025-11-26 19:15:48,408 | INFO     | intersect: -7885018320.068409
[2025-11-26 14:16:35] 2025-11-26 19:15:48,409 | INFO     | chi2: 9.733745456189919
[2025-11-26 14:16:35] 2025-11-26 19:15:48,409 | INFO     | current chi2=9.733745456189919 (change=23.872694623758044 %)
[2025-11-26 14:16:35] 2025-11-26 19:15:48,409 | INFO     | left removable region: 10
[2025-11-26 14:16:35] 2025-11-26 19:15:48,415 | INFO     | sum of square deviations: 216395877976.22974
[2025-11-26 14:16:35] 2025-11-26 19:15:48,431 | INFO     | sum of deviations: 1278293538687.597
[2025-11-26 14:16:35] 2025-11-26 19:15:48,431 | INFO     | mean x: 1764157099.2998872
[2025-11-26 14:16:35] 2025-11-26 19:15:48,431 | INFO     | mean y: 2911838.9751972943
[2025-11-26 14:16:35] 2025-11-26 19:15:48,431 | INFO     | intersect: -10418315415.236246
[2025-11-26 14:16:35] 2025-11-26 19:15:48,432 | INFO     | chi2: 5.6783172708813945
[2025-11-26 14:16:35] 2025-11-26 19:15:48,433 | INFO     | current memory leak: 5.91 B/s (using 887 data points, chi2=5.68)
[2025-11-26 14:16:35] 2025-11-26 19:15:48,434 | INFO     | could have reported an average CPU frequency of 2656 MHz (34 samples)
[2025-11-26 14:16:35] 2025-11-26 19:15:48,434 | INFO     | ..............................
[2025-11-26 14:16:35] 2025-11-26 19:15:48,434 | INFO     | . Timing measurements:
[2025-11-26 14:16:35] 2025-11-26 19:15:48,434 | INFO     | . get job = 0 s
[2025-11-26 14:16:35] 2025-11-26 19:15:48,434 | INFO     | . initial setup = 4 s
[2025-11-26 14:16:35] 2025-11-26 19:15:48,434 | INFO     | . payload setup = 32 s
[2025-11-26 14:16:35] 2025-11-26 19:15:48,434 | INFO     | . stage-in = 0 s
[2025-11-26 14:16:35] 2025-11-26 19:15:48,434 | INFO     | . payload execution = 55062 s
[2025-11-26 14:16:35] 2025-11-26 19:15:48,434 | INFO     | . stage-out = 8 s
[2025-11-26 14:16:35] 2025-11-26 19:15:48,434 | INFO     | . log creation = 1 s
[2025-11-26 14:16:35] 2025-11-26 19:15:48,435 | INFO     | ..............................
[2025-11-26 14:16:35] 2025-11-26 19:15:48,945 | INFO     | 
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | job summary report
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | --------------------------------------------------
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | PanDA job id: 6895882689
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | task id: 47556149
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | errors: (none)
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | pilot state: finished 
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | transexitcode: 0
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | exeerrorcode: 0
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | exeerrordiag: 
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | exitcode: 0
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | exitmsg: OK
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | cpuconsumptiontime: 257650 s
[2025-11-26 14:16:35] 2025-11-26 19:15:48,946 | INFO     | nevents: 1000
[2025-11-26 14:16:35] 2025-11-26 19:15:48,947 | INFO     | neventsw: 0
[2025-11-26 14:16:35] 2025-11-26 19:15:48,947 | INFO     | pid: 669717
[2025-11-26 14:16:35] 2025-11-26 19:15:48,947 | INFO     | pgrp: 669717
[2025-11-26 14:16:35] 2025-11-26 19:15:48,947 | INFO     | corecount: 8
[2025-11-26 14:16:35] 2025-11-26 19:15:48,947 | INFO     | event service: False
[2025-11-26 14:16:35] 2025-11-26 19:15:48,947 | INFO     | sizes: {0: 2283486, 1: 2284171, 2: 2284370, 13: 2284370, 24: 2284426, 27: 2284716, 35: 2284872, 55099: 2334689, 55108: 2343683, 55110: 2343739, 55140: 2343763}
[2025-11-26 14:16:35] 2025-11-26 19:15:48,947 | INFO     | --------------------------------------------------
[2025-11-26 14:16:35] 2025-11-26 19:15:48,947 | INFO     | 
[2025-11-26 14:16:35] 2025-11-26 19:15:48,947 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 14:16:35] 2025-11-26 19:15:49,124 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,124 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,124 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,124 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,124 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,124 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,124 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:16:35] 2025-11-26 19:15:49,125 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,126 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:16:35] 2025-11-26 19:15:49,126 | INFO     | job 6895882689 has completed (purged errors)
[2025-11-26 14:16:35] 2025-11-26 19:15:49,126 | INFO     | overall cleanup function is called
[2025-11-26 14:16:35] 2025-11-26 19:15:50,232 | INFO     | --- collectZombieJob: --- 10, [669717]
[2025-11-26 14:16:35] 2025-11-26 19:15:50,233 | INFO     | zombie collector waiting for pid 669717
[2025-11-26 14:16:35] 2025-11-26 19:15:50,233 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:16:35] 2025-11-26 19:15:50,233 | INFO     | collected zombie processes
[2025-11-26 14:16:35] 2025-11-26 19:15:50,233 | INFO     | will attempt to kill all subprocesses of pid=669717
[2025-11-26 14:16:35] 2025-11-26 19:15:51,952 | INFO     | process IDs to be killed: [669717] (in reverse order)
[2025-11-26 14:16:35] 2025-11-26 19:15:52,734 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:16:35] 2025-11-26 19:15:52,735 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:16:35] 2025-11-26 19:15:52,767 | INFO     | did not find any defunct processes belonging to 669717
[2025-11-26 14:16:35] 2025-11-26 19:15:52,801 | INFO     | did not find any defunct processes belonging to 669717
[2025-11-26 14:16:35] 2025-11-26 19:15:52,873 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:16:35] 2025-11-26 19:15:52,874 | INFO     | ready for new job
[2025-11-26 14:16:35] 2025-11-26 19:15:52,874 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:16:35] 2025-11-26 19:15:52,879 | INFO     | ***************************************
[2025-11-26 14:16:35] 2025-11-26 19:15:52,879 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:16:35] 2025-11-26 19:15:52,879 | INFO     | ***************************************
[2025-11-26 14:16:35] 2025-11-26 19:15:52,879 | INFO     | 
[2025-11-26 14:16:35] 2025-11-26 19:15:52,885 | INFO     | architecture information:
[2025-11-26 14:16:35] 2025-11-26 19:15:52,903 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:16:35] 2025-11-26 19:15:53,357 | INFO     | cat /etc/os-release:
[2025-11-26 14:16:35] NAME="CentOS Linux"
[2025-11-26 14:16:35] VERSION="7 (Core)"
[2025-11-26 14:16:35] ID="centos"
[2025-11-26 14:16:35] ID_LIKE="rhel fedora"
[2025-11-26 14:16:35] VERSION_ID="7"
[2025-11-26 14:16:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:16:35] ANSI_COLOR="0;31"
[2025-11-26 14:16:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:16:35] HOME_URL="https://www.centos.org/"
[2025-11-26 14:16:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:16:35] 
[2025-11-26 14:16:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:16:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:16:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:16:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:16:35] 
[2025-11-26 14:16:35] 2025-11-26 19:15:53,357 | INFO     | ***************************************
[2025-11-26 14:16:35] 2025-11-26 19:15:53,859 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 14:16:35] 2025-11-26 19:15:54,197 | INFO     | sufficient remaining disk space (88802852864 B)
[2025-11-26 14:16:35] 2025-11-26 19:15:54,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:16:35] 2025-11-26 19:15:54,198 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:16:35] 2025-11-26 19:15:54,198 | INFO     | update_server=False
[2025-11-26 14:16:35] 2025-11-26 19:15:54,198 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:16:35] 2025-11-26 19:15:54,198 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:16:35] 2025-11-26 19:15:54,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:16:35] 2025-11-26 19:15:54,199 | INFO     | aborting loop
[2025-11-26 14:16:35] 2025-11-26 19:15:54,222 | INFO     | all data control threads have been joined
[2025-11-26 14:16:35] 2025-11-26 19:15:54,323 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:16:35] 2025-11-26 19:15:54,617 | INFO     | all job control threads have been joined
[2025-11-26 14:16:35] 2025-11-26 19:15:55,101 | INFO     | all payload control threads have been joined
[2025-11-26 14:16:35] 2025-11-26 19:15:55,204 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:55,242 | INFO     | [data] control thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:55,259 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:55,264 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:55,560 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:55,594 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:55,623 | INFO     | [job] control thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:55,865 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:16:35] 2025-11-26 19:15:56,076 | INFO     | [job] validate thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:56,084 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:56,108 | INFO     | [payload] control thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:56,333 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:56,363 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:56,511 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:56,519 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:56,753 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:15:59,914 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:16:35] 2025-11-26 19:16:24,013 | INFO     | PID=661176 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 14:16:35] 2025-11-26 19:16:24,013 | INFO     | .. there are 52 such processes running
[2025-11-26 14:16:35] 2025-11-26 19:16:24,014 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:16:35] 2025-11-26 19:16:24,014 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:16:35] 2025-11-26 19:16:24,014 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:16:35] 2025-11-26 19:16:26,579 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:16:35] 2025-11-26 19:16:27,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139875993900864)>', '<ExcThread(monitor, started 139875634358016)>']
[2025-11-26 14:16:35] 2025-11-26 19:16:28,043 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:16:35] 2025-11-26 19:16:28,044 | INFO     | [monitor] control thread has ended
[2025-11-26 14:16:35] 2025-11-26 19:16:32,855 | INFO     | all workflow threads have been joined
[2025-11-26 14:16:35] 2025-11-26 19:16:32,856 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:16:35] 2025-11-26 19:16:32,860 | INFO     | traces error code: 0
[2025-11-26 14:16:35] 2025-11-26 19:16:32,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:16:35] 2025-11-26 19:16:34,237 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:16:35] 2025-11-26 19:16:34,278 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:16:35] 2025-11-26 19:16:34,307 [wrapper] pilotpid: 661176
[2025-11-26 14:16:35] 2025-11-26 19:16:34,331 [wrapper] Pilot exit status: 0
[2025-11-26 14:16:35] 2025-11-26 19:16:34,438 [wrapper] pandaids: 6895882689
[2025-11-26 14:16:35] 2025-11-26 19:16:34,676 [wrapper] cleanup supervisor_pilot  464362 661177
[2025-11-26 14:16:35] 2025-11-26 19:16:34,707 [wrapper] Test setup, not cleaning
[2025-11-26 14:16:35] 2025-11-26 19:16:34,731 [wrapper] apfmon messages muted
[2025-11-26 14:16:35] 2025-11-26 19:16:34,778 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:16:35] 2025-11-26 19:16:34,807 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:16:35]  *** Error codes and diagnostics ***
[2025-11-26 14:16:35]     "exeErrorCode": 0,
[2025-11-26 14:16:35]     "exeErrorDiag": "",
[2025-11-26 14:16:35]     "pilotErrorCode": 0,
[2025-11-26 14:16:35]     "pilotErrorDiag": "",
[2025-11-26 14:16:35]  *** Listing of results directory ***
[2025-11-26 14:16:35] total 1326036
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 11:37 queuedata.json
[2025-11-26 14:16:35] -rwx------. 1 boincer umatlas     36292 Nov 24 11:39 runpilot2-wrapper.sh
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas       100 Nov 25 22:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:16:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 22:54 run_atlas
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas       105 Nov 25 22:54 job.xml
[2025-11-26 14:16:35] -rw-r--r--. 2 boincer umatlas 411749681 Nov 25 22:54 EVNT.47483658._001387.pool.root.1
[2025-11-26 14:16:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:54 start_atlas.sh
[2025-11-26 14:16:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 22:54 shared
[2025-11-26 14:16:35] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 22:54 input.tar.gz
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas         0 Nov 25 22:54 boinc_lockfile
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 22:54 pandaJob.out
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas        57 Nov 25 22:54 setup.sh.local
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas    991877 Nov 25 22:55 agis_schedconf.cvmfs.json
[2025-11-26 14:16:35] drwx------. 5 boincer umatlas      4096 Nov 25 22:55 pilot3
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas       533 Nov 26 13:53 boinc_task_state.xml
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas      6881 Nov 26 14:12 init_data.xml
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas 924347780 Nov 26 14:14 HITS.47556149._003735.pool.root.1
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas      1058 Nov 26 14:15 memory_monitor_summary.json
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas   1516240 Nov 26 14:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas   2057452 Nov 26 14:15 log.47556149._003735.job.log.tgz.1
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas      8622 Nov 26 14:15 heartbeat.json
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas        95 Nov 26 14:16 pilot_heartbeat.json
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas      4823 Nov 26 14:16 pilotlog.txt
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 14:16 boinc_mmap_file
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas   6862838 Nov 26 14:16 log.47556149._003735.job.log.1
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas        29 Nov 26 14:16 wrapper_checkpoint.txt
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas       353 Nov 26 14:16 output.list
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas       620 Nov 26 14:16 runtime_log
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas   8939520 Nov 26 14:16 result.tar.gz
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 14:16 runtime_log.err
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas       662 Nov 26 14:16 idIKDmamoh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7lLKDm6ujH0n.diag
[2025-11-26 14:16:35] -rw-r--r--. 1 boincer umatlas     21781 Nov 26 14:16 stderr.txt
[2025-11-26 14:16:35] HITS file was successfully produced:
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas 924347780 Nov 26 14:14 shared/HITS.pool.root.1
[2025-11-26 14:16:35]  *** Contents of shared directory: ***
[2025-11-26 14:16:35] total 1314120
[2025-11-26 14:16:35] -rw-r--r--. 2 boincer umatlas 411749681 Nov 25 22:54 ATLAS.root_0
[2025-11-26 14:16:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:54 start_atlas.sh
[2025-11-26 14:16:35] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 22:54 input.tar.gz
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas 924347780 Nov 26 14:14 HITS.pool.root.1
[2025-11-26 14:16:35] -rw-------. 1 boincer umatlas   8939520 Nov 26 14:16 result.tar.gz
14:16:37 (655307): run_atlas exited; CPU time 260164.103177
14:16:37 (655307): called boinc_finish(0)

</stderr_txt>
]]>

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