Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:38:44 (4133264): wrapper (7.7.26015): starting
19:38:44 (4133264): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:38:44] Arguments: --nthreads 8
[2025-11-25 19:38:44] Threads: 8
[2025-11-25 19:38:44] Checking for CVMFS
[2025-11-25 19:38:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:38:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:38:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:38:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:38:45] 2.13.3.0 15397 29201 213904 153303 2 229 25801850 32935936 41963 16776704 0 295123332 99.623 282952490 36437 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:38:45] CVMFS is ok
[2025-11-25 19:38:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:38:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:38:45] Further information can be found at the LHC@home message board.
[2025-11-25 19:38:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:38:45] Checking for apptainer binary...
[2025-11-25 19:38:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:38:45] Running /usr/bin/apptainer --version
[2025-11-25 19:38:45] apptainer version 1.4.4-1.el9
[2025-11-25 19:38:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:38:45] c7-16-8.aglt2.org
[2025-11-25 19:38:45] apptainer works
[2025-11-25 19:38:45] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:38:45] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:38:45] Starting ATLAS job with PandaID=6895882276
[2025-11-25 19:38:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:20:08 (4133264): BOINC client no longer exists - exiting
22:20:08 (4133264): timer handler: client dead, exiting
22:31:40 (1289096): wrapper (7.7.26015): starting
22:31:40 (1289096): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:31:40] Arguments: --nthreads 8
[2025-11-25 22:31:40] Threads: 8
[2025-11-25 22:31:40] This job has been restarted, cleaning up previous attempt
[2025-11-25 22:31:40] Checking for CVMFS
[2025-11-25 22:31:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:31:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:31:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:31:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:31:40] 2.13.3.0 15397 29374 237292 153307 1 747 31012748 32935936 35055 16776704 0 297281663 99.623 284852886 36428 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:31:40] CVMFS is ok
[2025-11-25 22:31:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:31:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:31:40] Further information can be found at the LHC@home message board.
[2025-11-25 22:31:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:31:40] Checking for apptainer binary...
[2025-11-25 22:31:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:31:40] Running /usr/bin/apptainer --version
[2025-11-25 22:31:40] apptainer version 1.4.4-1.el9
[2025-11-25 22:31:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:31:40] c7-16-8.aglt2.org
[2025-11-25 22:31:40] apptainer works
[2025-11-25 22:31:41] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:31:41] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:31:41] Starting ATLAS job with PandaID=6895882276
[2025-11-25 22:31:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:28:39]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:28:39] 2025-11-26 19:27:41,022 | INFO     | monitor loop #3402: job 0:6895882276 is in state 'finished'
[2025-11-26 14:28:39] 2025-11-26 19:27:41,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:28:39] 2025-11-26 19:27:42,252 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 14:28:39] 2025-11-26 19:27:42,265 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3174.0917812499997
[2025-11-26 14:28:39] 2025-11-26 19:27:42,305 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895882276/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 14:28:39] 2025-11-26 19:27:42,310 | INFO     | extracted standard info from prmon json
[2025-11-26 14:28:39] 2025-11-26 19:27:42,310 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:28:39] 2025-11-26 19:27:42,310 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:28:39] 2025-11-26 19:27:42,335 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:28:39] 2025-11-26 19:27:42,336 | INFO     | sum of square deviations: 257547711600.0804
[2025-11-26 14:28:39] 2025-11-26 19:27:42,407 | INFO     | sum of deviations: 1482034887209.877
[2025-11-26 14:28:39] 2025-11-26 19:27:42,407 | INFO     | mean x: 1764156581.5723405
[2025-11-26 14:28:39] 2025-11-26 19:27:42,407 | INFO     | mean y: 3074206.4723404255
[2025-11-26 14:28:39] 2025-11-26 19:27:42,407 | INFO     | intersect: -10148604424.829113
[2025-11-26 14:28:39] 2025-11-26 19:27:42,408 | INFO     | chi2: 9.452261916730492
[2025-11-26 14:28:39] 2025-11-26 19:27:42,409 | INFO     | sum of square deviations: 253460284883.49283
[2025-11-26 14:28:39] 2025-11-26 19:27:42,445 | INFO     | sum of deviations: 1838764906829.774
[2025-11-26 14:28:39] 2025-11-26 19:27:42,445 | INFO     | mean x: 1764156429.0834224
[2025-11-26 14:28:39] 2025-11-26 19:27:42,445 | INFO     | mean y: 3087511.720855615
[2025-11-26 14:28:39] 2025-11-26 19:27:42,445 | INFO     | intersect: -12795244713.968164
[2025-11-26 14:28:39] 2025-11-26 19:27:42,446 | INFO     | chi2: 5.891176432476495
[2025-11-26 14:28:39] 2025-11-26 19:27:42,446 | INFO     | current chi2=5.891176432476495 (change=37.67442666766227 %)
[2025-11-26 14:28:39] 2025-11-26 19:27:42,447 | INFO     | sum of square deviations: 249416176134.73102
[2025-11-26 14:28:39] 2025-11-26 19:27:42,484 | INFO     | sum of deviations: 2139129490690.27
[2025-11-26 14:28:39] 2025-11-26 19:27:42,485 | INFO     | mean x: 1764156276.5913978
[2025-11-26 14:28:39] 2025-11-26 19:27:42,485 | INFO     | mean y: 3098827.2086021504
[2025-11-26 14:28:39] 2025-11-26 19:27:42,485 | INFO     | intersect: -15127269924.032576
[2025-11-26 14:28:39] 2025-11-26 19:27:42,486 | INFO     | chi2: 3.097792072859036
[2025-11-26 14:28:39] 2025-11-26 19:27:42,486 | INFO     | current chi2=3.097792072859036 (change=47.41640980599853 %)
[2025-11-26 14:28:39] 2025-11-26 19:27:42,510 | INFO     | sum of square deviations: 245414814419.5524
[2025-11-26 14:28:39] 2025-11-26 19:27:42,559 | INFO     | sum of deviations: 2175774227954.376
[2025-11-26 14:28:39] 2025-11-26 19:27:42,559 | INFO     | mean x: 1764156124.0897298
[2025-11-26 14:28:39] 2025-11-26 19:27:42,560 | INFO     | mean y: 3100218.0075675678
[2025-11-26 14:28:39] 2025-11-26 19:27:42,560 | INFO     | intersect: -15637379505.927576
[2025-11-26 14:28:39] 2025-11-26 19:27:42,567 | INFO     | chi2: 2.9199764223331406
[2025-11-26 14:28:39] 2025-11-26 19:27:42,567 | INFO     | current chi2=2.9199764223331406 (change=5.740077007873041 %)
[2025-11-26 14:28:39] 2025-11-26 19:27:42,567 | INFO     | right removable region: 924
[2025-11-26 14:28:39] 2025-11-26 19:27:42,568 | INFO     | sum of square deviations: 253459096603.49292
[2025-11-26 14:28:39] 2025-11-26 19:27:42,606 | INFO     | sum of deviations: 1229172465752.943
[2025-11-26 14:28:39] 2025-11-26 19:27:42,606 | INFO     | mean x: 1764156734.0834224
[2025-11-26 14:28:39] 2025-11-26 19:27:42,607 | INFO     | mean y: 3083624.667379679
[2025-11-26 14:28:39] 2025-11-26 19:27:42,607 | INFO     | intersect: -8552351598.871943
[2025-11-26 14:28:39] 2025-11-26 19:27:42,608 | INFO     | chi2: 7.513955645960269
[2025-11-26 14:28:39] 2025-11-26 19:27:42,608 | INFO     | current chi2=7.513955645960269 (change=20.506269164414746 %)
[2025-11-26 14:28:39] 2025-11-26 19:27:42,608 | INFO     | left removable region: 10
[2025-11-26 14:28:39] 2025-11-26 19:27:42,609 | INFO     | sum of square deviations: 236762122283.55893
[2025-11-26 14:28:39] 2025-11-26 19:27:42,641 | INFO     | sum of deviations: 1828325501040.4756
[2025-11-26 14:28:39] 2025-11-26 19:27:42,642 | INFO     | mean x: 1764156398.609409
[2025-11-26 14:28:39] 2025-11-26 19:27:42,642 | INFO     | mean y: 3113354.340262582
[2025-11-26 14:28:39] 2025-11-26 19:27:42,642 | INFO     | intersect: -13620062938.776148
[2025-11-26 14:28:39] 2025-11-26 19:27:42,643 | INFO     | chi2: 0.8360118260153675
[2025-11-26 14:28:39] 2025-11-26 19:27:42,643 | INFO     | current memory leak: 7.72 B/s (using 914 data points, chi2=0.84)
[2025-11-26 14:28:39] 2025-11-26 19:27:42,644 | INFO     | could have reported an average CPU frequency of 3209 MHz (35 samples)
[2025-11-26 14:28:39] 2025-11-26 19:27:42,644 | INFO     | ..............................
[2025-11-26 14:28:39] 2025-11-26 19:27:42,648 | INFO     | . Timing measurements:
[2025-11-26 14:28:39] 2025-11-26 19:27:42,648 | INFO     | . get job = 0 s
[2025-11-26 14:28:39] 2025-11-26 19:27:42,648 | INFO     | . initial setup = 1 s
[2025-11-26 14:28:39] 2025-11-26 19:27:42,648 | INFO     | . payload setup = 6 s
[2025-11-26 14:28:39] 2025-11-26 19:27:42,649 | INFO     | . stage-in = 0 s
[2025-11-26 14:28:39] 2025-11-26 19:27:42,649 | INFO     | . payload execution = 57295 s
[2025-11-26 14:28:39] 2025-11-26 19:27:42,649 | INFO     | . stage-out = 7 s
[2025-11-26 14:28:39] 2025-11-26 19:27:42,649 | INFO     | . log creation = 2 s
[2025-11-26 14:28:39] 2025-11-26 19:27:42,649 | INFO     | ..............................
[2025-11-26 14:28:39] 2025-11-26 19:27:42,732 | INFO     | time since job start (57351s) is within the limit (172800.0s)
[2025-11-26 14:28:39] 2025-11-26 19:27:43,105 | INFO     | 
[2025-11-26 14:28:39] 2025-11-26 19:27:43,105 | INFO     | job summary report
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | --------------------------------------------------
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | PanDA job id: 6895882276
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | task id: 47556149
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | errors: (none)
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | pilot state: finished 
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | transexitcode: 0
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | exeerrorcode: 0
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | exeerrordiag: 
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | exitcode: 0
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | exitmsg: OK
[2025-11-26 14:28:39] 2025-11-26 19:27:43,106 | INFO     | cpuconsumptiontime: 200402 s
[2025-11-26 14:28:39] 2025-11-26 19:27:43,107 | INFO     | nevents: 1000
[2025-11-26 14:28:39] 2025-11-26 19:27:43,107 | INFO     | neventsw: 0
[2025-11-26 14:28:39] 2025-11-26 19:27:43,107 | INFO     | pid: 1374389
[2025-11-26 14:28:39] 2025-11-26 19:27:43,107 | INFO     | pgrp: 1374389
[2025-11-26 14:28:39] 2025-11-26 19:27:43,107 | INFO     | corecount: 8
[2025-11-26 14:28:39] 2025-11-26 19:27:43,107 | INFO     | event service: False
[2025-11-26 14:28:39] 2025-11-26 19:27:43,107 | INFO     | sizes: {0: 2284314, 5: 2284576, 11: 2284632, 57303: 2336428, 57304: 2336427, 57312: 2345477, 57314: 2345661, 57335: 2345907}
[2025-11-26 14:28:39] 2025-11-26 19:27:43,107 | INFO     | --------------------------------------------------
[2025-11-26 14:28:39] 2025-11-26 19:27:43,107 | INFO     | 
[2025-11-26 14:28:39] 2025-11-26 19:27:43,107 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 14:28:39] 2025-11-26 19:27:43,159 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,160 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,160 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,160 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,160 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,160 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,160 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,160 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,160 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,160 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,160 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,161 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,161 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,161 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,161 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,161 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,161 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,161 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:28:39] 2025-11-26 19:27:43,161 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,161 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:28:39] 2025-11-26 19:27:43,161 | INFO     | job 6895882276 has completed (purged errors)
[2025-11-26 14:28:39] 2025-11-26 19:27:43,161 | INFO     | overall cleanup function is called
[2025-11-26 14:28:39] 2025-11-26 19:27:44,192 | INFO     | --- collectZombieJob: --- 10, [1374389]
[2025-11-26 14:28:39] 2025-11-26 19:27:44,192 | INFO     | zombie collector waiting for pid 1374389
[2025-11-26 14:28:39] 2025-11-26 19:27:44,193 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:28:39] 2025-11-26 19:27:44,193 | INFO     | collected zombie processes
[2025-11-26 14:28:39] 2025-11-26 19:27:44,193 | INFO     | will attempt to kill all subprocesses of pid=1374389
[2025-11-26 14:28:39] 2025-11-26 19:27:46,528 | INFO     | process IDs to be killed: [1374389] (in reverse order)
[2025-11-26 14:28:39] 2025-11-26 19:27:46,945 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:28:39] 2025-11-26 19:27:46,945 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:28:39] 2025-11-26 19:27:47,070 | INFO     | did not find any defunct processes belonging to 1374389
[2025-11-26 14:28:39] 2025-11-26 19:27:47,198 | INFO     | did not find any defunct processes belonging to 1374389
[2025-11-26 14:28:39] 2025-11-26 19:27:47,200 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:28:39] 2025-11-26 19:27:47,200 | INFO     | ready for new job
[2025-11-26 14:28:39] 2025-11-26 19:27:47,200 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:28:39] 2025-11-26 19:27:47,204 | INFO     | ***************************************
[2025-11-26 14:28:39] 2025-11-26 19:27:47,204 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:28:39] 2025-11-26 19:27:47,204 | INFO     | ***************************************
[2025-11-26 14:28:39] 2025-11-26 19:27:47,204 | INFO     | 
[2025-11-26 14:28:39] 2025-11-26 19:27:47,209 | INFO     | architecture information:
[2025-11-26 14:28:39] 2025-11-26 19:27:47,216 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:28:39] 2025-11-26 19:27:47,344 | INFO     | cat /etc/os-release:
[2025-11-26 14:28:39] NAME="CentOS Linux"
[2025-11-26 14:28:39] VERSION="7 (Core)"
[2025-11-26 14:28:39] ID="centos"
[2025-11-26 14:28:39] ID_LIKE="rhel fedora"
[2025-11-26 14:28:39] VERSION_ID="7"
[2025-11-26 14:28:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:28:39] ANSI_COLOR="0;31"
[2025-11-26 14:28:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:28:39] HOME_URL="https://www.centos.org/"
[2025-11-26 14:28:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:28:39] 
[2025-11-26 14:28:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:28:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:28:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:28:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:28:39] 
[2025-11-26 14:28:39] 2025-11-26 19:27:47,345 | INFO     | ***************************************
[2025-11-26 14:28:39] 2025-11-26 19:27:47,848 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 14:28:39] 2025-11-26 19:27:47,928 | INFO     | sufficient remaining disk space (59170095104 B)
[2025-11-26 14:28:39] 2025-11-26 19:27:47,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:28:39] 2025-11-26 19:27:47,928 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:28:39] 2025-11-26 19:27:47,928 | INFO     | update_server=False
[2025-11-26 14:28:39] 2025-11-26 19:27:47,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:28:39] 2025-11-26 19:27:47,931 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:28:39] 2025-11-26 19:27:47,932 | INFO     | aborting loop
[2025-11-26 14:28:39] 2025-11-26 19:27:48,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:28:39] 2025-11-26 19:27:48,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:28:39] 2025-11-26 19:27:48,217 | INFO     | all job control threads have been joined
[2025-11-26 14:28:39] 2025-11-26 19:27:48,834 | INFO     | all payload control threads have been joined
[2025-11-26 14:28:39] 2025-11-26 19:27:48,839 | INFO     | all data control threads have been joined
[2025-11-26 14:28:39] 2025-11-26 19:27:48,935 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:48,944 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:48,951 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:49,173 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:49,203 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:49,212 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:49,230 | INFO     | [job] control thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:49,348 | INFO     | [job] validate thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:49,840 | INFO     | [payload] control thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:49,845 | INFO     | [data] control thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:49,872 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:49,879 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:50,100 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:50,322 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:50,352 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:27:51,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:28:39] 2025-11-26 19:27:55,114 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:28:39] 2025-11-26 19:28:17,402 | INFO     | PID=1317100 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 14:28:39] 2025-11-26 19:28:17,402 | INFO     | .. there are 77 such processes running
[2025-11-26 14:28:39] 2025-11-26 19:28:17,402 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:28:39] 2025-11-26 19:28:17,402 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:28:39] 2025-11-26 19:28:17,402 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:28:39] 2025-11-26 19:28:32,464 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:28:39] 2025-11-26 19:28:33,288 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140281274406720)>', '<ExcThread(monitor, started 140280762177280)>']
[2025-11-26 14:28:39] 2025-11-26 19:28:33,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:28:39] 2025-11-26 19:28:33,531 | INFO     | [monitor] control thread has ended
[2025-11-26 14:28:39] 2025-11-26 19:28:38,332 | INFO     | all workflow threads have been joined
[2025-11-26 14:28:39] 2025-11-26 19:28:38,332 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:28:39] 2025-11-26 19:28:38,333 | INFO     | traces error code: 0
[2025-11-26 14:28:39] 2025-11-26 19:28:38,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:28:39] 2025-11-26 19:28:38,917 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:28:39] 2025-11-26 19:28:38,940 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:28:39] 2025-11-26 19:28:38,965 [wrapper] pilotpid: 1317100
[2025-11-26 14:28:39] 2025-11-26 19:28:38,972 [wrapper] Pilot exit status: 0
[2025-11-26 14:28:39] 2025-11-26 19:28:38,993 [wrapper] pandaids: 6895882276 6895882276
[2025-11-26 14:28:39] 2025-11-26 19:28:39,182 [wrapper] cleanup supervisor_pilot  130012 1317102
[2025-11-26 14:28:39] 2025-11-26 19:28:39,257 [wrapper] Test setup, not cleaning
[2025-11-26 14:28:39] 2025-11-26 19:28:39,270 [wrapper] apfmon messages muted
[2025-11-26 14:28:39] 2025-11-26 19:28:39,277 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:28:39] 2025-11-26 19:28:39,286 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:28:39]  *** Error codes and diagnostics ***
[2025-11-26 14:28:39]     "exeErrorCode": 0,
[2025-11-26 14:28:39]     "exeErrorDiag": "",
[2025-11-26 14:28:39]     "pilotErrorCode": 0,
[2025-11-26 14:28:39]     "pilotErrorDiag": "",
[2025-11-26 14:28:39]  *** Listing of results directory ***
[2025-11-26 14:28:39] total 1728604
[2025-11-26 14:28:39] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-26 14:28:39] -rwx------. 1 boincer umatlas     36292 Nov 24 11:21 runpilot2-wrapper.sh
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 11:21 queuedata.json
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:28:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:38 run_atlas
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:38 job.xml
[2025-11-26 14:28:39] -rw-r--r--. 3 boincer umatlas 409870764 Nov 25 19:38 EVNT.47483658._001381.pool.root.1
[2025-11-26 14:28:39] -rw-r--r--. 3 boincer umatlas 409870764 Nov 25 19:38 ATLAS.root_0
[2025-11-26 14:28:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:38 start_atlas.sh
[2025-11-26 14:28:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:38 shared
[2025-11-26 14:28:39] -rw-r--r--. 2 boincer umatlas    590095 Nov 25 19:38 input.tar.gz
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:38 boinc_lockfile
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 22:31 pandaJob.out
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas        57 Nov 25 22:31 setup.sh.local
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas    991877 Nov 25 22:31 agis_schedconf.cvmfs.json
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas       532 Nov 26 14:12 boinc_task_state.xml
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas 927876379 Nov 26 14:25 HITS.47556149._003672.pool.root.1
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas      1073 Nov 26 14:27 memory_monitor_summary.json
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas   1516240 Nov 26 14:27 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 14:27 init_data.xml
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas   2078806 Nov 26 14:27 log.47556149._003672.job.log.tgz.1
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas        96 Nov 26 14:27 pilot_heartbeat.json
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas      8644 Nov 26 14:27 heartbeat.json
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 14:28 boinc_mmap_file
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas        29 Nov 26 14:28 wrapper_checkpoint.txt
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas      4824 Nov 26 14:28 pilotlog.txt
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas   7190603 Nov 26 14:28 log.47556149._003672.job.log.1
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas       353 Nov 26 14:28 output.list
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas       620 Nov 26 14:28 runtime_log
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas   9287680 Nov 26 14:28 result.tar.gz
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas       789 Nov 26 14:28 UUEODmTUoh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJ7IKDmUnH5sn.diag
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas      9423 Nov 26 14:28 runtime_log.err
[2025-11-26 14:28:39] -rw-r--r--. 1 boincer umatlas     23627 Nov 26 14:28 stderr.txt
[2025-11-26 14:28:39] HITS file was successfully produced:
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas 927876379 Nov 26 14:25 shared/HITS.pool.root.1
[2025-11-26 14:28:39]  *** Contents of shared directory: ***
[2025-11-26 14:28:39] total 1316076
[2025-11-26 14:28:39] -rw-r--r--. 3 boincer umatlas 409870764 Nov 25 19:38 ATLAS.root_0
[2025-11-26 14:28:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:38 start_atlas.sh
[2025-11-26 14:28:39] -rw-r--r--. 2 boincer umatlas    590095 Nov 25 19:38 input.tar.gz
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas 927876379 Nov 26 14:25 HITS.pool.root.1
[2025-11-26 14:28:39] -rw-------. 1 boincer umatlas   9287680 Nov 26 14:28 result.tar.gz
14:28:41 (1289096): run_atlas exited; CPU time 202450.323882
14:28:41 (1289096): called boinc_finish(0)

</stderr_txt>
]]>

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