Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:04 (3512269): wrapper (7.7.26015): starting
00:05:04 (3512269): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:05:04] Arguments: --nthreads 8
[2025-11-26 00:05:04] Threads: 8
[2025-11-26 00:05:04] Checking for CVMFS
[2025-11-26 00:05:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:05:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:05:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:05:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:05:04] 2.13.3.0 12537 29604 364904 153309 2 223 39597561 40960001 31259 16776704 43 170556922 99.715 129440754 37337 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:05:04] CVMFS is ok
[2025-11-26 00:05:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:05:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:05:04] Further information can be found at the LHC@home message board.
[2025-11-26 00:05:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:05:04] Checking for apptainer binary...
[2025-11-26 00:05:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:05:04] Running /usr/bin/apptainer --version
[2025-11-26 00:05:05] apptainer version 1.4.4-1.el9
[2025-11-26 00:05:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:05:05] c7-11-14.aglt2.org
[2025-11-26 00:05:05] apptainer works
[2025-11-26 00:05:05] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:05:05] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:05:05] Starting ATLAS job with PandaID=6896450939
[2025-11-26 00:05:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:26:37]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:26:37] 2025-11-27 01:25:47,076 | INFO     | time since job start (73224s) is within the limit (172800.0s)
[2025-11-26 20:26:37] 2025-11-27 01:25:48,328 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:26:37] 2025-11-27 01:25:48,336 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3292.4470312500016
[2025-11-26 20:26:37] 2025-11-27 01:25:48,357 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896450939/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:26:37] 2025-11-27 01:25:48,358 | INFO     | extracted standard info from prmon json
[2025-11-26 20:26:37] 2025-11-27 01:25:48,358 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:26:37] 2025-11-27 01:25:48,358 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:26:37] 2025-11-27 01:25:48,378 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:26:37] 2025-11-27 01:25:48,379 | INFO     | sum of square deviations: 535814750738.3328
[2025-11-26 20:26:37] 2025-11-27 01:25:48,407 | INFO     | sum of deviations: 3509286103300.187
[2025-11-26 20:26:37] 2025-11-27 01:25:48,408 | INFO     | mean x: 1764170127.2925
[2025-11-26 20:26:37] 2025-11-27 01:25:48,408 | INFO     | mean y: 2894712.5208333335
[2025-11-26 20:26:37] 2025-11-27 01:25:48,408 | INFO     | intersect: -11551430178.74794
[2025-11-26 20:26:37] 2025-11-27 01:25:48,409 | INFO     | chi2: 4.711053706407642
[2025-11-26 20:26:37] 2025-11-27 01:25:48,410 | INFO     | sum of square deviations: 529145111080.17914
[2025-11-26 20:26:37] 2025-11-27 01:25:48,435 | INFO     | sum of deviations: 3834072182252.53
[2025-11-26 20:26:37] 2025-11-27 01:25:48,435 | INFO     | mean x: 1764169974.795816
[2025-11-26 20:26:37] 2025-11-27 01:25:48,435 | INFO     | mean y: 2902134.6661087866
[2025-11-26 20:26:37] 2025-11-27 01:25:48,435 | INFO     | intersect: -12779895785.023771
[2025-11-26 20:26:37] 2025-11-27 01:25:48,436 | INFO     | chi2: 2.4489517491841597
[2025-11-26 20:26:37] 2025-11-27 01:25:48,436 | INFO     | current chi2=2.4489517491841597 (change=48.01690021378299 %)
[2025-11-26 20:26:37] 2025-11-27 01:25:48,438 | INFO     | sum of square deviations: 522530835542.286
[2025-11-26 20:26:37] 2025-11-27 01:25:48,462 | INFO     | sum of deviations: 3880126254290.1465
[2025-11-26 20:26:37] 2025-11-27 01:25:48,462 | INFO     | mean x: 1764169822.2966387
[2025-11-26 20:26:37] 2025-11-27 01:25:48,462 | INFO     | mean y: 2903193.560504202
[2025-11-26 20:26:37] 2025-11-27 01:25:48,462 | INFO     | intersect: -13097188090.842978
[2025-11-26 20:26:37] 2025-11-27 01:25:48,463 | INFO     | chi2: 2.268894151712916
[2025-11-26 20:26:37] 2025-11-27 01:25:48,463 | INFO     | current chi2=2.268894151712916 (change=7.352435487192749 %)
[2025-11-26 20:26:37] 2025-11-27 01:25:48,463 | INFO     | right removable region: 1189
[2025-11-26 20:26:37] 2025-11-27 01:25:48,464 | INFO     | sum of square deviations: 529144603926.77026
[2025-11-26 20:26:37] 2025-11-27 01:25:48,489 | INFO     | sum of deviations: 3208981316883.299
[2025-11-26 20:26:37] 2025-11-27 01:25:48,489 | INFO     | mean x: 1764170279.794979
[2025-11-26 20:26:37] 2025-11-27 01:25:48,490 | INFO     | mean y: 2901569.450209205
[2025-11-26 20:26:37] 2025-11-27 01:25:48,490 | INFO     | intersect: -10695855302.775852
[2025-11-26 20:26:37] 2025-11-27 01:25:48,491 | INFO     | chi2: 2.6914762843599647
[2025-11-26 20:26:37] 2025-11-27 01:25:48,491 | INFO     | current chi2=2.6914762843599647 (change=42.86891103153401 %)
[2025-11-26 20:26:37] 2025-11-27 01:25:48,492 | INFO     | sum of square deviations: 522530549815.81604
[2025-11-26 20:26:37] 2025-11-27 01:25:48,517 | INFO     | sum of deviations: 3103675275142.1553
[2025-11-26 20:26:37] 2025-11-27 01:25:48,517 | INFO     | mean x: 1764170432.2915967
[2025-11-26 20:26:37] 2025-11-27 01:25:48,517 | INFO     | mean y: 2903997.4260504204
[2025-11-26 20:26:37] 2025-11-27 01:25:48,517 | INFO     | intersect: -10475741038.295353
[2025-11-26 20:26:37] 2025-11-27 01:25:48,518 | INFO     | chi2: 2.6072930147657596
[2025-11-26 20:26:37] 2025-11-27 01:25:48,518 | INFO     | current chi2=2.6072930147657596 (change=3.1277730397770878 %)
[2025-11-26 20:26:37] 2025-11-27 01:25:48,518 | INFO     | left removable region: 20
[2025-11-26 20:26:37] 2025-11-27 01:25:48,519 | INFO     | sum of square deviations: 495352709021.9029
[2025-11-26 20:26:37] 2025-11-27 01:25:48,544 | INFO     | sum of deviations: 3305874089703.118
[2025-11-26 20:26:37] 2025-11-27 01:25:48,544 | INFO     | mean x: 1764170401.7929854
[2025-11-26 20:26:37] 2025-11-27 01:25:48,544 | INFO     | mean y: 2916322.599657827
[2025-11-26 20:26:37] 2025-11-27 01:25:48,544 | INFO     | intersect: -11770765570.902802
[2025-11-26 20:26:37] 2025-11-27 01:25:48,545 | INFO     | chi2: 0.09139817770675263
[2025-11-26 20:26:37] 2025-11-27 01:25:48,546 | INFO     | current memory leak: 6.67 B/s (using 1169 data points, chi2=0.09)
[2025-11-26 20:26:37] 2025-11-27 01:25:48,547 | INFO     | could have reported an average CPU frequency of 3290 MHz (44 samples)
[2025-11-26 20:26:37] 2025-11-27 01:25:48,547 | INFO     | ..............................
[2025-11-26 20:26:37] 2025-11-27 01:25:48,547 | INFO     | . Timing measurements:
[2025-11-26 20:26:37] 2025-11-27 01:25:48,547 | INFO     | . get job = 0 s
[2025-11-26 20:26:37] 2025-11-27 01:25:48,547 | INFO     | . initial setup = 2 s
[2025-11-26 20:26:37] 2025-11-27 01:25:48,547 | INFO     | . payload setup = 9 s
[2025-11-26 20:26:37] 2025-11-27 01:25:48,547 | INFO     | . stage-in = 0 s
[2025-11-26 20:26:37] 2025-11-27 01:25:48,547 | INFO     | . payload execution = 73179 s
[2025-11-26 20:26:37] 2025-11-27 01:25:48,547 | INFO     | . stage-out = 3 s
[2025-11-26 20:26:37] 2025-11-27 01:25:48,547 | INFO     | . log creation = 0 s
[2025-11-26 20:26:37] 2025-11-27 01:25:48,547 | INFO     | ..............................
[2025-11-26 20:26:37] 2025-11-27 01:25:48,622 | INFO     | 
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | job summary report
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | --------------------------------------------------
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | PanDA job id: 6896450939
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | task id: 47556161
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | errors: (none)
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | pilot state: finished 
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | transexitcode: 0
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | exeerrorcode: 0
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | exeerrordiag: 
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | exitcode: 0
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | exitmsg: OK
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | cpuconsumptiontime: 205386 s
[2025-11-26 20:26:37] 2025-11-27 01:25:48,623 | INFO     | nevents: 1000
[2025-11-26 20:26:37] 2025-11-27 01:25:48,624 | INFO     | neventsw: 0
[2025-11-26 20:26:37] 2025-11-27 01:25:48,624 | INFO     | pid: 3532395
[2025-11-26 20:26:37] 2025-11-27 01:25:48,624 | INFO     | pgrp: 3532395
[2025-11-26 20:26:37] 2025-11-27 01:25:48,624 | INFO     | corecount: 8
[2025-11-26 20:26:37] 2025-11-27 01:25:48,624 | INFO     | event service: False
[2025-11-26 20:26:37] 2025-11-27 01:25:48,624 | INFO     | sizes: {0: 2284040, 1: 2284239, 10: 2284501, 11: 2284529, 73192: 2344320, 73193: 2344319, 73197: 2353497, 73199: 2353553, 73208: 2353799}
[2025-11-26 20:26:37] 2025-11-27 01:25:48,624 | INFO     | --------------------------------------------------
[2025-11-26 20:26:37] 2025-11-27 01:25:48,624 | INFO     | 
[2025-11-26 20:26:37] 2025-11-27 01:25:48,624 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 20:26:37] 2025-11-27 01:25:48,649 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,651 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,651 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:26:37] 2025-11-27 01:25:48,651 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,651 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:26:37] 2025-11-27 01:25:48,651 | INFO     | job 6896450939 has completed (purged errors)
[2025-11-26 20:26:37] 2025-11-27 01:25:48,651 | INFO     | overall cleanup function is called
[2025-11-26 20:26:37] 2025-11-27 01:25:49,677 | INFO     | --- collectZombieJob: --- 10, [3532395]
[2025-11-26 20:26:37] 2025-11-27 01:25:49,690 | INFO     | zombie collector waiting for pid 3532395
[2025-11-26 20:26:37] 2025-11-27 01:25:49,690 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:26:37] 2025-11-27 01:25:49,690 | INFO     | collected zombie processes
[2025-11-26 20:26:37] 2025-11-27 01:25:49,690 | INFO     | will attempt to kill all subprocesses of pid=3532395
[2025-11-26 20:26:37] 2025-11-27 01:25:50,240 | INFO     | process IDs to be killed: [3532395] (in reverse order)
[2025-11-26 20:26:37] 2025-11-27 01:25:50,451 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:26:37] 2025-11-27 01:25:50,451 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:26:37] 2025-11-27 01:25:50,489 | INFO     | did not find any defunct processes belonging to 3532395
[2025-11-26 20:26:37] 2025-11-27 01:25:50,797 | INFO     | did not find any defunct processes belonging to 3532395
[2025-11-26 20:26:37] 2025-11-27 01:25:50,807 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:26:37] 2025-11-27 01:25:50,807 | INFO     | ready for new job
[2025-11-26 20:26:37] 2025-11-27 01:25:50,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:26:37] 2025-11-27 01:25:50,819 | INFO     | ***************************************
[2025-11-26 20:26:37] 2025-11-27 01:25:50,819 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:26:37] 2025-11-27 01:25:50,819 | INFO     | ***************************************
[2025-11-26 20:26:37] 2025-11-27 01:25:50,819 | INFO     | 
[2025-11-26 20:26:37] 2025-11-27 01:25:50,826 | INFO     | architecture information:
[2025-11-26 20:26:37] 2025-11-27 01:25:50,845 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:26:37] 2025-11-27 01:25:50,862 | INFO     | cat /etc/os-release:
[2025-11-26 20:26:37] NAME="CentOS Linux"
[2025-11-26 20:26:37] VERSION="7 (Core)"
[2025-11-26 20:26:37] ID="centos"
[2025-11-26 20:26:37] ID_LIKE="rhel fedora"
[2025-11-26 20:26:37] VERSION_ID="7"
[2025-11-26 20:26:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:26:37] ANSI_COLOR="0;31"
[2025-11-26 20:26:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:26:37] HOME_URL="https://www.centos.org/"
[2025-11-26 20:26:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:26:37] 
[2025-11-26 20:26:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:26:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:26:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:26:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:26:37] 
[2025-11-26 20:26:37] 2025-11-27 01:25:50,863 | INFO     | ***************************************
[2025-11-26 20:26:37] 2025-11-27 01:25:51,383 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 20:26:37] 2025-11-27 01:25:51,465 | INFO     | sufficient remaining disk space (79831236608 B)
[2025-11-26 20:26:37] 2025-11-27 01:25:51,466 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:26:37] 2025-11-27 01:25:51,466 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:26:37] 2025-11-27 01:25:51,466 | INFO     | update_server=False
[2025-11-26 20:26:37] 2025-11-27 01:25:51,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:26:37] 2025-11-27 01:25:51,466 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:26:37] 2025-11-27 01:25:51,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:26:37] 2025-11-27 01:25:51,560 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 20:26:37] 2025-11-27 01:25:51,560 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 20:26:37] 2025-11-27 01:25:51,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:26:37] 2025-11-27 01:25:51,561 | INFO     | will abort loop
[2025-11-26 20:26:37] 2025-11-27 01:25:52,060 | INFO     | all payload control threads have been joined
[2025-11-26 20:26:37] 2025-11-27 01:25:52,164 | INFO     | all data control threads have been joined
[2025-11-26 20:26:37] 2025-11-27 01:25:52,484 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:52,567 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:52,615 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:52,670 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:52,801 | INFO     | all job control threads have been joined
[2025-11-26 20:26:37] 2025-11-27 01:25:52,917 | INFO     | [job] validate thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:53,066 | INFO     | [payload] control thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:53,084 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:53,172 | INFO     | [data] control thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:53,473 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:53,515 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:53,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:26:37] 2025-11-27 01:25:53,676 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:53,809 | INFO     | [job] control thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:53,913 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:53,947 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:54,661 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:25:55,496 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:26:37] 2025-11-27 01:26:20,753 | INFO     | PID=3516036 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:26:37] 2025-11-27 01:26:20,753 | INFO     | .. there are 51 such processes running
[2025-11-26 20:26:37] 2025-11-27 01:26:20,753 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:26:37] 2025-11-27 01:26:20,754 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:26:37] 2025-11-27 01:26:20,754 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:26:37] 2025-11-27 01:26:30,685 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:26:37] 2025-11-27 01:26:31,456 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140142936999744)>', '<ExcThread(monitor, started 140142048155392)>']
[2025-11-26 20:26:37] 2025-11-27 01:26:31,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:26:37] 2025-11-27 01:26:31,829 | INFO     | [monitor] control thread has ended
[2025-11-26 20:26:37] 2025-11-27 01:26:36,482 | INFO     | all workflow threads have been joined
[2025-11-26 20:26:37] 2025-11-27 01:26:36,499 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:26:37] 2025-11-27 01:26:36,499 | INFO     | traces error code: 0
[2025-11-26 20:26:37] 2025-11-27 01:26:36,499 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:26:37] 2025-11-27 01:26:36,716 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:26:37] 2025-11-27 01:26:36,722 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:26:37] 2025-11-27 01:26:36,733 [wrapper] pilotpid: 3516036
[2025-11-26 20:26:37] 2025-11-27 01:26:36,740 [wrapper] Pilot exit status: 0
[2025-11-26 20:26:37] 2025-11-27 01:26:36,782 [wrapper] pandaids: 6896450939
[2025-11-26 20:26:37] 2025-11-27 01:26:36,945 [wrapper] cleanup supervisor_pilot 2808479 3516037
[2025-11-26 20:26:37] 2025-11-27 01:26:36,967 [wrapper] Test setup, not cleaning
[2025-11-26 20:26:37] 2025-11-27 01:26:36,970 [wrapper] apfmon messages muted
[2025-11-26 20:26:37] 2025-11-27 01:26:36,973 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:26:37] 2025-11-27 01:26:36,978 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:26:37]  *** Error codes and diagnostics ***
[2025-11-26 20:26:37]     "exeErrorCode": 0,
[2025-11-26 20:26:37]     "exeErrorDiag": "",
[2025-11-26 20:26:37]     "pilotErrorCode": 0,
[2025-11-26 20:26:37]     "pilotErrorDiag": "",
[2025-11-26 20:26:37]  *** Listing of results directory ***
[2025-11-26 20:26:37] total 1334856
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 20:26:37] -rwx------. 1 boincer umatlas     36292 Nov 24 23:10 runpilot2-wrapper.sh
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:11 queuedata.json
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:26:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:05 run_atlas
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:05 job.xml
[2025-11-26 20:26:37] -rw-r--r--. 2 boincer umatlas 408743367 Nov 26 00:05 EVNT.47483658._002080.pool.root.1
[2025-11-26 20:26:37] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 00:05 input.tar.gz
[2025-11-26 20:26:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:05 start_atlas.sh
[2025-11-26 20:26:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:05 shared
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:05 boinc_lockfile
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 00:05 pandaJob.out
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas        57 Nov 26 00:05 setup.sh.local
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas    991877 Nov 26 00:05 agis_schedconf.cvmfs.json
[2025-11-26 20:26:37] drwx------. 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:16 boinc_task_state.xml
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas      6905 Nov 26 20:20 init_data.xml
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas 930531177 Nov 26 20:24 HITS.47556161._000637.pool.root.1
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas      1060 Nov 26 20:25 memory_monitor_summary.json
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:25 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas   2314630 Nov 26 20:25 log.47556161._000637.job.log.tgz.1
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas        95 Nov 26 20:25 pilot_heartbeat.json
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas      8606 Nov 26 20:25 heartbeat.json
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:26 wrapper_checkpoint.txt
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas      5010 Nov 26 20:26 pilotlog.txt
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:26 boinc_mmap_file
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas   9530680 Nov 26 20:26 log.47556161._000637.job.log.1
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas       353 Nov 26 20:26 output.list
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:26 runtime_log
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas  11868160 Nov 26 20:26 result.tar.gz
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 20:26 runtime_log.err
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas       665 Nov 26 20:26 ngLLDmMZzh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgJJKDmMXy47m.diag
[2025-11-26 20:26:37] -rw-r--r--. 1 boincer umatlas     21334 Nov 26 20:26 stderr.txt
[2025-11-26 20:26:37] HITS file was successfully produced:
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas 930531177 Nov 26 20:24 shared/HITS.pool.root.1
[2025-11-26 20:26:37]  *** Contents of shared directory: ***
[2025-11-26 20:26:37] total 1320084
[2025-11-26 20:26:37] -rw-r--r--. 2 boincer umatlas 408743367 Nov 26 00:05 ATLAS.root_0
[2025-11-26 20:26:37] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 00:05 input.tar.gz
[2025-11-26 20:26:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:05 start_atlas.sh
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas 930531177 Nov 26 20:24 HITS.pool.root.1
[2025-11-26 20:26:37] -rw-------. 1 boincer umatlas  11868160 Nov 26 20:26 result.tar.gz
20:26:38 (3512269): run_atlas exited; CPU time 205980.314144
20:26:38 (3512269): called boinc_finish(0)

</stderr_txt>
]]>

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