Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:30:49 (934603): wrapper (7.7.26015): starting
19:30:49 (934603): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:30:49] Arguments: --nthreads 8
[2025-11-25 19:30:49] Threads: 8
[2025-11-25 19:30:49] Checking for CVMFS
[2025-11-25 19:30:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:30:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:30:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:30:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:30:51] 2.13.3.0 44796 29191 370036 153303 1 711 27900865 32947201 28557 16776704 0 114825771 99.466 158629252 35697 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:30:51] CVMFS is ok
[2025-11-25 19:30:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:30:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:30:51] Further information can be found at the LHC@home message board.
[2025-11-25 19:30:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:30:51] Checking for apptainer binary...
[2025-11-25 19:30:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:30:51] Running /usr/bin/apptainer --version
[2025-11-25 19:30:51] apptainer version 1.4.4-1.el9
[2025-11-25 19:30:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:30:51] c6-6-8-2.aglt2.org
[2025-11-25 19:30:51] apptainer works
[2025-11-25 19:30:51] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:30:51] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:30:51] Starting ATLAS job with PandaID=6893867557
[2025-11-25 19:30:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:29:57]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:29:58] 2025-11-27 04:29:02,791 | INFO     | .. there are 39 such processes running
[2025-11-26 23:29:58] 2025-11-27 04:29:03,792 | INFO     | time since job start (100640s) is within the limit (172800.0s)
[2025-11-26 23:29:58] 2025-11-27 04:29:04,335 | INFO     | monitor loop #5326: job 0:6893867557 is in state 'finished'
[2025-11-26 23:29:58] 2025-11-27 04:29:04,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:29:58] 2025-11-27 04:29:05,800 | INFO     | time since job start (100642s) is within the limit (172800.0s)
[2025-11-26 23:29:58] 2025-11-27 04:29:06,855 | INFO     | monitor loop #5327: job 0:6893867557 is in state 'finished'
[2025-11-26 23:29:58] 2025-11-27 04:29:06,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:29:58] 2025-11-27 04:29:07,809 | INFO     | time since job start (100644s) is within the limit (172800.0s)
[2025-11-26 23:29:58] 2025-11-27 04:29:09,362 | INFO     | monitor loop #5328: job 0:6893867557 is in state 'finished'
[2025-11-26 23:29:58] 2025-11-27 04:29:09,363 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:29:58] 2025-11-27 04:29:09,839 | INFO     | time since job start (100646s) is within the limit (172800.0s)
[2025-11-26 23:29:58] 2025-11-27 04:29:11,846 | INFO     | time since job start (100648s) is within the limit (172800.0s)
[2025-11-26 23:29:58] 2025-11-27 04:29:11,869 | INFO     | monitor loop #5329: job 0:6893867557 is in state 'finished'
[2025-11-26 23:29:58] 2025-11-27 04:29:11,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:29:58] 2025-11-27 04:29:13,563 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 23:29:58] 2025-11-27 04:29:13,640 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2514.5178125
[2025-11-26 23:29:58] 2025-11-27 04:29:13,787 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6893867557/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:29:58] 2025-11-27 04:29:13,789 | INFO     | extracted standard info from prmon json
[2025-11-26 23:29:58] 2025-11-27 04:29:13,789 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:29:58] 2025-11-27 04:29:13,789 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:29:58] 2025-11-27 04:29:13,897 | INFO     | time since job start (100650s) is within the limit (172800.0s)
[2025-11-26 23:29:58] 2025-11-27 04:29:13,927 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:29:58] 2025-11-27 04:29:13,933 | INFO     | sum of square deviations: 1385167786833.2505
[2025-11-26 23:29:58] 2025-11-27 04:29:14,068 | INFO     | sum of deviations: 5247388837529.515
[2025-11-26 23:29:58] 2025-11-27 04:29:14,069 | INFO     | mean x: 1764167456.3831208
[2025-11-26 23:29:58] 2025-11-27 04:29:14,069 | INFO     | mean y: 2909694.6156648453
[2025-11-26 23:29:58] 2025-11-27 04:29:14,069 | INFO     | intersect: -6680232020.166384
[2025-11-26 23:29:58] 2025-11-27 04:29:14,071 | INFO     | chi2: 17.383070535099513
[2025-11-26 23:29:58] 2025-11-27 04:29:14,078 | INFO     | sum of square deviations: 1372591734040.4187
[2025-11-26 23:29:58] 2025-11-27 04:29:14,205 | INFO     | sum of deviations: 5787678153389.875
[2025-11-26 23:29:58] 2025-11-27 04:29:14,206 | INFO     | mean x: 1764167303.8995128
[2025-11-26 23:29:58] 2025-11-27 04:29:14,206 | INFO     | mean y: 2916244.59317905
[2025-11-26 23:29:58] 2025-11-27 04:29:14,206 | INFO     | intersect: -7435881695.452744
[2025-11-26 23:29:58] 2025-11-27 04:29:14,213 | INFO     | chi2: 14.397634687424338
[2025-11-26 23:29:58] 2025-11-27 04:29:14,213 | INFO     | current chi2=14.397634687424338 (change=17.174387238704742 %)
[2025-11-26 23:29:58] 2025-11-27 04:29:14,213 | INFO     | right removable region: 1641
[2025-11-26 23:29:58] 2025-11-27 04:29:14,221 | INFO     | sum of square deviations: 1372586325780.4202
[2025-11-26 23:29:58] 2025-11-27 04:29:14,352 | INFO     | sum of deviations: 4591220985576.697
[2025-11-26 23:29:58] 2025-11-27 04:29:14,353 | INFO     | mean x: 1764167608.8995128
[2025-11-26 23:29:58] 2025-11-27 04:29:14,353 | INFO     | mean y: 2917647.616321559
[2025-11-26 23:29:58] 2025-11-27 04:29:14,353 | INFO     | intersect: -5898119828.805293
[2025-11-26 23:29:58] 2025-11-27 04:29:14,356 | INFO     | chi2: 13.35333497263115
[2025-11-26 23:29:58] 2025-11-27 04:29:14,357 | INFO     | current chi2=13.35333497263115 (change=23.181954846996742 %)
[2025-11-26 23:29:58] 2025-11-27 04:29:14,357 | INFO     | left removable region: 10
[2025-11-26 23:29:58] 2025-11-27 04:29:14,364 | INFO     | sum of square deviations: 1345182009190.9265
[2025-11-26 23:29:58] 2025-11-27 04:29:14,408 | INFO     | monitor loop #5330: job 0:6893867557 is in state 'finished'
[2025-11-26 23:29:58] 2025-11-27 04:29:14,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:29:58] 2025-11-27 04:29:14,492 | INFO     | sum of deviations: 4679445335317.622
[2025-11-26 23:29:58] 2025-11-27 04:29:14,492 | INFO     | mean x: 1764167578.4353158
[2025-11-26 23:29:58] 2025-11-27 04:29:14,497 | INFO     | mean y: 2932411.5793991415
[2025-11-26 23:29:58] 2025-11-27 04:29:14,497 | INFO     | intersect: -6134025776.4006605
[2025-11-26 23:29:58] 2025-11-27 04:29:14,499 | INFO     | chi2: 6.930485021442016
[2025-11-26 23:29:58] 2025-11-27 04:29:14,500 | INFO     | current memory leak: 3.48 B/s (using 1631 data points, chi2=6.93)
[2025-11-26 23:29:58] 2025-11-27 04:29:14,506 | INFO     | could have reported an average CPU frequency of 2586 MHz (58 samples)
[2025-11-26 23:29:58] 2025-11-27 04:29:14,506 | INFO     | ..............................
[2025-11-26 23:29:58] 2025-11-27 04:29:14,506 | INFO     | . Timing measurements:
[2025-11-26 23:29:58] 2025-11-27 04:29:14,507 | INFO     | . get job = 0 s
[2025-11-26 23:29:58] 2025-11-27 04:29:14,507 | INFO     | . initial setup = 5 s
[2025-11-26 23:29:58] 2025-11-27 04:29:14,507 | INFO     | . payload setup = 47 s
[2025-11-26 23:29:58] 2025-11-27 04:29:14,507 | INFO     | . stage-in = 0 s
[2025-11-26 23:29:58] 2025-11-27 04:29:14,507 | INFO     | . payload execution = 100480 s
[2025-11-26 23:29:58] 2025-11-27 04:29:14,507 | INFO     | . stage-out = 10 s
[2025-11-26 23:29:58] 2025-11-27 04:29:14,507 | INFO     | . log creation = 1 s
[2025-11-26 23:29:58] 2025-11-27 04:29:14,507 | INFO     | ..............................
[2025-11-26 23:29:58] 2025-11-27 04:29:14,724 | INFO     | 
[2025-11-26 23:29:58] 2025-11-27 04:29:14,724 | INFO     | job summary report
[2025-11-26 23:29:58] 2025-11-27 04:29:14,724 | INFO     | --------------------------------------------------
[2025-11-26 23:29:58] 2025-11-27 04:29:14,724 | INFO     | PanDA job id: 6893867557
[2025-11-26 23:29:58] 2025-11-27 04:29:14,724 | INFO     | task id: 47523449
[2025-11-26 23:29:58] 2025-11-27 04:29:14,724 | INFO     | errors: (none)
[2025-11-26 23:29:58] 2025-11-27 04:29:14,725 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:29:58] 2025-11-27 04:29:14,725 | INFO     | pilot state: finished 
[2025-11-26 23:29:58] 2025-11-27 04:29:14,725 | INFO     | transexitcode: 0
[2025-11-26 23:29:58] 2025-11-27 04:29:14,725 | INFO     | exeerrorcode: 0
[2025-11-26 23:29:58] 2025-11-27 04:29:14,725 | INFO     | exeerrordiag: 
[2025-11-26 23:29:58] 2025-11-27 04:29:14,725 | INFO     | exitcode: 0
[2025-11-26 23:29:58] 2025-11-27 04:29:14,725 | INFO     | exitmsg: OK
[2025-11-26 23:29:58] 2025-11-27 04:29:14,725 | INFO     | cpuconsumptiontime: 274063 s
[2025-11-26 23:29:58] 2025-11-27 04:29:14,725 | INFO     | nevents: 1000
[2025-11-26 23:29:58] 2025-11-27 04:29:14,725 | INFO     | neventsw: 0
[2025-11-26 23:29:58] 2025-11-27 04:29:14,725 | INFO     | pid: 957010
[2025-11-26 23:29:58] 2025-11-27 04:29:14,726 | INFO     | pgrp: 957010
[2025-11-26 23:29:58] 2025-11-27 04:29:14,726 | INFO     | corecount: 8
[2025-11-26 23:29:58] 2025-11-27 04:29:14,726 | INFO     | event service: False
[2025-11-26 23:29:58] 2025-11-27 04:29:14,726 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 23: 2284371, 30: 2284661, 35: 2284689, 100531: 2354510, 100542: 2363504, 100545: 2363560, 100583: 2363806}
[2025-11-26 23:29:58] 2025-11-27 04:29:14,726 | INFO     | --------------------------------------------------
[2025-11-26 23:29:58] 2025-11-27 04:29:14,726 | INFO     | 
[2025-11-26 23:29:58] 2025-11-27 04:29:14,726 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 23:29:58] 2025-11-27 04:29:14,816 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,816 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,816 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,816 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,817 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,817 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,817 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,817 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,817 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,817 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,818 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,818 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,818 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:29:58] 2025-11-27 04:29:14,818 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,818 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:29:58] 2025-11-27 04:29:14,818 | INFO     | job 6893867557 has completed (purged errors)
[2025-11-26 23:29:58] 2025-11-27 04:29:14,818 | INFO     | overall cleanup function is called
[2025-11-26 23:29:58] 2025-11-27 04:29:15,933 | INFO     | --- collectZombieJob: --- 10, [957010]
[2025-11-26 23:29:58] 2025-11-27 04:29:15,934 | INFO     | zombie collector waiting for pid 957010
[2025-11-26 23:29:58] 2025-11-27 04:29:15,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:29:58] 2025-11-27 04:29:15,934 | INFO     | collected zombie processes
[2025-11-26 23:29:58] 2025-11-27 04:29:15,934 | INFO     | will attempt to kill all subprocesses of pid=957010
[2025-11-26 23:29:58] 2025-11-27 04:29:17,594 | INFO     | process IDs to be killed: [957010] (in reverse order)
[2025-11-26 23:29:58] 2025-11-27 04:29:17,965 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:29:58] 2025-11-27 04:29:17,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:29:58] 2025-11-27 04:29:18,007 | INFO     | did not find any defunct processes belonging to 957010
[2025-11-26 23:29:58] 2025-11-27 04:29:18,047 | INFO     | did not find any defunct processes belonging to 957010
[2025-11-26 23:29:58] 2025-11-27 04:29:18,051 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:29:58] 2025-11-27 04:29:18,051 | INFO     | ready for new job
[2025-11-26 23:29:58] 2025-11-27 04:29:18,052 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:29:58] 2025-11-27 04:29:18,064 | INFO     | ***************************************
[2025-11-26 23:29:58] 2025-11-27 04:29:18,071 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:29:58] 2025-11-27 04:29:18,071 | INFO     | ***************************************
[2025-11-26 23:29:58] 2025-11-27 04:29:18,071 | INFO     | 
[2025-11-26 23:29:58] 2025-11-27 04:29:18,081 | INFO     | architecture information:
[2025-11-26 23:29:58] 2025-11-27 04:29:18,086 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:29:58] 2025-11-27 04:29:18,154 | INFO     | cat /etc/os-release:
[2025-11-26 23:29:58] NAME="CentOS Linux"
[2025-11-26 23:29:58] VERSION="7 (Core)"
[2025-11-26 23:29:58] ID="centos"
[2025-11-26 23:29:58] ID_LIKE="rhel fedora"
[2025-11-26 23:29:58] VERSION_ID="7"
[2025-11-26 23:29:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:29:58] ANSI_COLOR="0;31"
[2025-11-26 23:29:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:29:58] HOME_URL="https://www.centos.org/"
[2025-11-26 23:29:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:29:58] 
[2025-11-26 23:29:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:29:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:29:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:29:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:29:58] 
[2025-11-26 23:29:58] 2025-11-27 04:29:18,154 | INFO     | ***************************************
[2025-11-26 23:29:58] 2025-11-27 04:29:18,659 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 23:29:58] 2025-11-27 04:29:18,704 | INFO     | sufficient remaining disk space (68633493504 B)
[2025-11-26 23:29:58] 2025-11-27 04:29:18,704 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:29:58] 2025-11-27 04:29:18,705 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:29:58] 2025-11-27 04:29:18,705 | INFO     | update_server=False
[2025-11-26 23:29:58] 2025-11-27 04:29:18,705 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:29:58] 2025-11-27 04:29:18,705 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:29:58] 2025-11-27 04:29:18,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:29:58] 2025-11-27 04:29:18,706 | INFO     | aborting loop
[2025-11-26 23:29:58] 2025-11-27 04:29:19,077 | INFO     | all payload control threads have been joined
[2025-11-26 23:29:58] 2025-11-27 04:29:19,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:29:58] 2025-11-27 04:29:19,713 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:19,717 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:19,742 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:29:58] 2025-11-27 04:29:19,763 | INFO     | all data control threads have been joined
[2025-11-26 23:29:58] 2025-11-27 04:29:19,794 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:19,877 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:20,093 | INFO     | [payload] control thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:20,238 | INFO     | all job control threads have been joined
[2025-11-26 23:29:58] 2025-11-27 04:29:20,579 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:20,715 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:20,749 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:20,770 | INFO     | [data] control thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:20,976 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:20,992 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:20,993 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:21,085 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:21,102 | INFO     | [job] validate thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:21,243 | INFO     | [job] control thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:23,597 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:29:58] 2025-11-27 04:29:48,788 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:29:58] 2025-11-27 04:29:49,666 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140186573088576)>', '<ExcThread(monitor, started 140185786382080)>']
[2025-11-26 23:29:58] 2025-11-27 04:29:49,858 | INFO     | PID=941973 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 23:29:58] 2025-11-27 04:29:49,858 | INFO     | .. there are 39 such processes running
[2025-11-26 23:29:58] 2025-11-27 04:29:49,859 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:29:58] 2025-11-27 04:29:49,859 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:29:58] 2025-11-27 04:29:49,859 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:29:58] 2025-11-27 04:29:49,859 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:29:58] 2025-11-27 04:29:49,859 | INFO     | [monitor] control thread has ended
[2025-11-26 23:29:58] 2025-11-27 04:29:54,691 | INFO     | all workflow threads have been joined
[2025-11-26 23:29:58] 2025-11-27 04:29:54,692 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:29:58] 2025-11-27 04:29:54,692 | INFO     | traces error code: 0
[2025-11-26 23:29:58] 2025-11-27 04:29:54,692 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:29:58] 2025-11-27 04:29:56,908 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:29:58] 2025-11-27 04:29:56,944 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:29:58] 2025-11-27 04:29:56,970 [wrapper] pilotpid: 941973
[2025-11-26 23:29:58] 2025-11-27 04:29:56,991 [wrapper] Pilot exit status: 0
[2025-11-26 23:29:58] 2025-11-27 04:29:57,080 [wrapper] pandaids: 6893867557
[2025-11-26 23:29:58] 2025-11-27 04:29:57,278 [wrapper] cleanup supervisor_pilot 2700460 941974
[2025-11-26 23:29:58] 2025-11-27 04:29:57,287 [wrapper] Test setup, not cleaning
[2025-11-26 23:29:58] 2025-11-27 04:29:57,303 [wrapper] apfmon messages muted
[2025-11-26 23:29:58] 2025-11-27 04:29:57,318 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:29:58] 2025-11-27 04:29:57,332 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:29:58]  *** Error codes and diagnostics ***
[2025-11-26 23:29:58]     "exeErrorCode": 0,
[2025-11-26 23:29:58]     "exeErrorDiag": "",
[2025-11-26 23:29:58]     "pilotErrorCode": 0,
[2025-11-26 23:29:58]     "pilotErrorDiag": "",
[2025-11-26 23:29:58]  *** Listing of results directory ***
[2025-11-26 23:29:58] total 1325000
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 09:06 pilot3.tar.gz
[2025-11-26 23:29:58] -rwx------ 1 boincer umatlas     36292 Nov 20 09:35 runpilot2-wrapper.sh
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 09:35 queuedata.json
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas       100 Nov 25 19:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:29:58] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 19:30 run_atlas
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas       105 Nov 25 19:30 job.xml
[2025-11-26 23:29:58] -rw-r--r-- 2 boincer umatlas 410376236 Nov 25 19:30 EVNT.47493127._000621.pool.root.1
[2025-11-26 23:29:58] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 19:30 start_atlas.sh
[2025-11-26 23:29:58] drwxrwx--x 2 boincer umatlas      4096 Nov 25 19:30 shared
[2025-11-26 23:29:58] -rw-r--r-- 2 boincer umatlas    590092 Nov 25 19:30 input.tar.gz
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas         0 Nov 25 19:30 boinc_lockfile
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 19:30 pandaJob.out
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas        57 Nov 25 19:30 setup.sh.local
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas    991877 Nov 25 19:31 agis_schedconf.cvmfs.json
[2025-11-26 23:29:58] drwx------ 5 boincer umatlas      4096 Nov 25 19:31 pilot3
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas       533 Nov 26 23:08 boinc_task_state.xml
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas      6878 Nov 26 23:27 init_data.xml
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas 913988312 Nov 26 23:27 HITS.47523449._006208.pool.root.1
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas      1060 Nov 26 23:28 memory_monitor_summary.json
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas   1516240 Nov 26 23:28 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas   2541234 Nov 26 23:28 log.47523449._006208.job.log.tgz.1
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas      8621 Nov 26 23:29 heartbeat.json
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas        95 Nov 26 23:29 pilot_heartbeat.json
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas      4823 Nov 26 23:29 pilotlog.txt
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 23:29 boinc_mmap_file
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas  11717691 Nov 26 23:29 log.47523449._006208.job.log.1
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas       353 Nov 26 23:29 output.list
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas       620 Nov 26 23:29 runtime_log
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas  14274560 Nov 26 23:29 result.tar.gz
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas      9344 Nov 26 23:29 runtime_log.err
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas       663 Nov 26 23:29 pLQKDmXwKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDoGKDmUJdLAn.diag
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas        29 Nov 26 23:29 wrapper_checkpoint.txt
[2025-11-26 23:29:58] -rw-r--r-- 1 boincer umatlas     21775 Nov 26 23:29 stderr.txt
[2025-11-26 23:29:58] HITS file was successfully produced:
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas 913988312 Nov 26 23:27 shared/HITS.pool.root.1
[2025-11-26 23:29:58]  *** Contents of shared directory: ***
[2025-11-26 23:29:58] total 1307872
[2025-11-26 23:29:58] -rw-r--r-- 2 boincer umatlas 410376236 Nov 25 19:30 ATLAS.root_0
[2025-11-26 23:29:58] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 19:30 start_atlas.sh
[2025-11-26 23:29:58] -rw-r--r-- 2 boincer umatlas    590092 Nov 25 19:30 input.tar.gz
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas 913988312 Nov 26 23:27 HITS.pool.root.1
[2025-11-26 23:29:58] -rw------- 1 boincer umatlas  14274560 Nov 26 23:29 result.tar.gz
23:29:59 (934603): run_atlas exited; CPU time 278060.308506
23:29:59 (934603): called boinc_finish(0)

</stderr_txt>
]]>

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