Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:54:38 (632228): wrapper (7.7.26015): starting
17:54:38 (632228): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 17:54:38] Arguments: --nthreads 8
[2025-11-25 17:54:38] Threads: 8
[2025-11-25 17:54:38] Checking for CVMFS
[2025-11-25 17:54:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:54:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:54:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:54:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:54:40] 2.13.3.0 44796 29095 370712 153300 1 569 25757110 32947200 28861 16776704 0 114468669 99.467 157973336 35725 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 17:54:40] CVMFS is ok
[2025-11-25 17:54:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:54:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:54:40] Further information can be found at the LHC@home message board.
[2025-11-25 17:54:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:54:40] Checking for apptainer binary...
[2025-11-25 17:54:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:54:40] Running /usr/bin/apptainer --version
[2025-11-25 17:54:40] apptainer version 1.4.4-1.el9
[2025-11-25 17:54:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:54:41] c6-6-8-2.aglt2.org
[2025-11-25 17:54:41] apptainer works
[2025-11-25 17:54:41] Set ATHENA_PROC_NUMBER=8
[2025-11-25 17:54:41] Set ATHENA_CORE_NUMBER=8
[2025-11-25 17:54:41] Starting ATLAS job with PandaID=6896450847
[2025-11-25 17:54:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:30:35]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:30:35] 2025-11-27 02:29:34,555 | INFO     | time since job start (99250s) is within the limit (172800.0s)
[2025-11-26 21:30:35] 2025-11-27 02:29:35,629 | INFO     | monitor loop #5418: job 0:6896450847 is in state 'finished'
[2025-11-26 21:30:35] 2025-11-27 02:29:35,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:30:35] 2025-11-27 02:29:36,589 | INFO     | time since job start (99252s) is within the limit (172800.0s)
[2025-11-26 21:30:35] 2025-11-27 02:29:38,134 | INFO     | monitor loop #5419: job 0:6896450847 is in state 'finished'
[2025-11-26 21:30:35] 2025-11-27 02:29:38,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:30:35] 2025-11-27 02:29:38,596 | INFO     | time since job start (99254s) is within the limit (172800.0s)
[2025-11-26 21:30:35] 2025-11-27 02:29:40,602 | INFO     | time since job start (99256s) is within the limit (172800.0s)
[2025-11-26 21:30:35] 2025-11-27 02:29:40,639 | INFO     | monitor loop #5420: job 0:6896450847 is in state 'finished'
[2025-11-26 21:30:35] 2025-11-27 02:29:40,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:30:35] 2025-11-27 02:29:42,610 | INFO     | time since job start (99258s) is within the limit (172800.0s)
[2025-11-26 21:30:35] 2025-11-27 02:29:43,151 | INFO     | monitor loop #5421: job 0:6896450847 is in state 'finished'
[2025-11-26 21:30:35] 2025-11-27 02:29:43,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:30:35] 2025-11-27 02:29:43,976 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 21:30:35] 2025-11-27 02:29:44,057 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2495.447385416667
[2025-11-26 21:30:35] 2025-11-27 02:29:44,312 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896450847/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:30:35] 2025-11-27 02:29:44,313 | INFO     | extracted standard info from prmon json
[2025-11-26 21:30:35] 2025-11-27 02:29:44,313 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:30:35] 2025-11-27 02:29:44,313 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:30:35] 2025-11-27 02:29:44,559 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:30:35] 2025-11-27 02:29:44,588 | INFO     | sum of square deviations: 1333064300209.8352
[2025-11-26 21:30:35] 2025-11-27 02:29:45,006 | INFO     | sum of deviations: 4640422246319.993
[2025-11-26 21:30:35] 2025-11-27 02:29:45,007 | INFO     | mean x: 1764160965.8333333
[2025-11-26 21:30:35] 2025-11-27 02:29:45,007 | INFO     | mean y: 2932576.3173431735
[2025-11-26 21:30:35] 2025-11-27 02:29:45,007 | INFO     | intersect: -6138145382.678146
[2025-11-26 21:30:35] 2025-11-27 02:29:45,009 | INFO     | chi2: 16.984551417951412
[2025-11-26 21:30:35] 2025-11-27 02:29:45,031 | INFO     | sum of square deviations: 1320806303525.2932
[2025-11-26 21:30:35] 2025-11-27 02:29:45,329 | INFO     | sum of deviations: 5253448262631.4375
[2025-11-26 21:30:35] 2025-11-27 02:29:45,330 | INFO     | mean x: 1764160813.3429983
[2025-11-26 21:30:35] 2025-11-27 02:29:45,330 | INFO     | mean y: 2940201.0783466995
[2025-11-26 21:30:35] 2025-11-27 02:29:45,330 | INFO     | intersect: -7013930883.7451515
[2025-11-26 21:30:35] 2025-11-27 02:29:45,357 | INFO     | chi2: 13.075024093597523
[2025-11-26 21:30:35] 2025-11-27 02:29:45,358 | INFO     | current chi2=13.075024093597523 (change=23.01813705966828 %)
[2025-11-26 21:30:35] 2025-11-27 02:29:45,358 | INFO     | right removable region: 1620
[2025-11-26 21:30:35] 2025-11-27 02:29:45,376 | INFO     | sum of square deviations: 1320803195209.2917
[2025-11-26 21:30:35] 2025-11-27 02:29:45,682 | INFO     | monitor loop #5422: job 0:6896450847 is in state 'finished'
[2025-11-26 21:30:35] 2025-11-27 02:29:45,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:30:35] 2025-11-27 02:29:45,940 | INFO     | sum of deviations: 4088138140098.5513
[2025-11-26 21:30:35] 2025-11-27 02:29:45,941 | INFO     | mean x: 1764161118.3429983
[2025-11-26 21:30:35] 2025-11-27 02:29:45,941 | INFO     | mean y: 2939443.581739667
[2025-11-26 21:30:35] 2025-11-27 02:29:45,941 | INFO     | intersect: -5457476142.431517
[2025-11-26 21:30:35] 2025-11-27 02:29:45,943 | INFO     | chi2: 14.167660255235264
[2025-11-26 21:30:35] 2025-11-27 02:29:45,944 | INFO     | current chi2=14.167660255235264 (change=16.58501948858598 %)
[2025-11-26 21:30:35] 2025-11-27 02:29:45,944 | INFO     | left removable region: 10
[2025-11-26 21:30:35] 2025-11-27 02:29:45,946 | INFO     | sum of square deviations: 1294098075668.1128
[2025-11-26 21:30:35] 2025-11-27 02:29:46,061 | INFO     | sum of deviations: 4615363315244.112
[2025-11-26 21:30:35] 2025-11-27 02:29:46,061 | INFO     | mean x: 1764161087.8614907
[2025-11-26 21:30:35] 2025-11-27 02:29:46,061 | INFO     | mean y: 2950802.413043478
[2025-11-26 21:30:35] 2025-11-27 02:29:46,061 | INFO     | intersect: -6288878634.775029
[2025-11-26 21:30:35] 2025-11-27 02:29:46,064 | INFO     | chi2: 9.378923615632779
[2025-11-26 21:30:35] 2025-11-27 02:29:46,064 | INFO     | current memory leak: 3.57 B/s (using 1610 data points, chi2=9.38)
[2025-11-26 21:30:35] 2025-11-27 02:29:46,068 | INFO     | could have reported an average CPU frequency of 2593 MHz (57 samples)
[2025-11-26 21:30:35] 2025-11-27 02:29:46,068 | INFO     | ..............................
[2025-11-26 21:30:35] 2025-11-27 02:29:46,068 | INFO     | . Timing measurements:
[2025-11-26 21:30:35] 2025-11-27 02:29:46,068 | INFO     | . get job = 0 s
[2025-11-26 21:30:35] 2025-11-27 02:29:46,068 | INFO     | . initial setup = 4 s
[2025-11-26 21:30:35] 2025-11-27 02:29:46,068 | INFO     | . payload setup = 20 s
[2025-11-26 21:30:35] 2025-11-27 02:29:46,069 | INFO     | . stage-in = 0 s
[2025-11-26 21:30:35] 2025-11-27 02:29:46,069 | INFO     | . payload execution = 99153 s
[2025-11-26 21:30:35] 2025-11-27 02:29:46,069 | INFO     | . stage-out = 12 s
[2025-11-26 21:30:35] 2025-11-27 02:29:46,069 | INFO     | . log creation = 4 s
[2025-11-26 21:30:35] 2025-11-27 02:29:46,069 | INFO     | ..............................
[2025-11-26 21:30:35] 2025-11-27 02:29:46,832 | INFO     | 
[2025-11-26 21:30:35] 2025-11-27 02:29:46,833 | INFO     | job summary report
[2025-11-26 21:30:35] 2025-11-27 02:29:46,833 | INFO     | --------------------------------------------------
[2025-11-26 21:30:35] 2025-11-27 02:29:46,833 | INFO     | PanDA job id: 6896450847
[2025-11-26 21:30:35] 2025-11-27 02:29:46,833 | INFO     | task id: 47556149
[2025-11-26 21:30:35] 2025-11-27 02:29:46,833 | INFO     | errors: (none)
[2025-11-26 21:30:35] 2025-11-27 02:29:46,833 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:30:35] 2025-11-27 02:29:46,833 | INFO     | pilot state: finished 
[2025-11-26 21:30:35] 2025-11-27 02:29:46,833 | INFO     | transexitcode: 0
[2025-11-26 21:30:35] 2025-11-27 02:29:46,834 | INFO     | exeerrorcode: 0
[2025-11-26 21:30:35] 2025-11-27 02:29:46,834 | INFO     | exeerrordiag: 
[2025-11-26 21:30:35] 2025-11-27 02:29:46,834 | INFO     | exitcode: 0
[2025-11-26 21:30:35] 2025-11-27 02:29:46,834 | INFO     | exitmsg: OK
[2025-11-26 21:30:35] 2025-11-27 02:29:46,834 | INFO     | cpuconsumptiontime: 281291 s
[2025-11-26 21:30:35] 2025-11-27 02:29:46,834 | INFO     | nevents: 1000
[2025-11-26 21:30:35] 2025-11-27 02:29:46,834 | INFO     | neventsw: 0
[2025-11-26 21:30:35] 2025-11-27 02:29:46,834 | INFO     | pid: 654062
[2025-11-26 21:30:35] 2025-11-27 02:29:46,834 | INFO     | pgrp: 654062
[2025-11-26 21:30:35] 2025-11-27 02:29:46,834 | INFO     | corecount: 8
[2025-11-26 21:30:35] 2025-11-27 02:29:46,858 | INFO     | event service: False
[2025-11-26 21:30:35] 2025-11-27 02:29:46,858 | INFO     | sizes: {0: 2284144, 1: 2284343, 2: 2284343, 13: 2284371, 18: 2284689, 23: 2284717, 99176: 2354123, 99177: 2354122, 99191: 2363172, 99192: 2363228, 99226: 2363474}
[2025-11-26 21:30:35] 2025-11-27 02:29:46,858 | INFO     | --------------------------------------------------
[2025-11-26 21:30:35] 2025-11-27 02:29:46,858 | INFO     | 
[2025-11-26 21:30:35] 2025-11-27 02:29:46,858 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 21:30:35] 2025-11-27 02:29:46,981 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,981 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,982 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,982 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,982 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,982 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,982 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,982 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,982 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,982 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,982 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,983 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,983 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,983 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,983 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,983 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:30:35] 2025-11-27 02:29:46,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,983 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:30:35] 2025-11-27 02:29:46,983 | INFO     | job 6896450847 has completed (purged errors)
[2025-11-26 21:30:35] 2025-11-27 02:29:46,984 | INFO     | overall cleanup function is called
[2025-11-26 21:30:35] 2025-11-27 02:29:47,695 | INFO     | PID=640045 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 21:30:35] 2025-11-27 02:29:47,695 | INFO     | .. there are 40 such processes running
[2025-11-26 21:30:35] 2025-11-27 02:29:48,389 | INFO     | --- collectZombieJob: --- 10, [654062]
[2025-11-26 21:30:35] 2025-11-27 02:29:48,390 | INFO     | zombie collector waiting for pid 654062
[2025-11-26 21:30:35] 2025-11-27 02:29:48,390 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:30:35] 2025-11-27 02:29:48,390 | INFO     | collected zombie processes
[2025-11-26 21:30:35] 2025-11-27 02:29:48,390 | INFO     | will attempt to kill all subprocesses of pid=654062
[2025-11-26 21:30:35] 2025-11-27 02:29:52,109 | INFO     | process IDs to be killed: [654062] (in reverse order)
[2025-11-26 21:30:35] 2025-11-27 02:29:52,637 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:30:35] 2025-11-27 02:29:52,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:30:35] 2025-11-27 02:29:52,683 | INFO     | did not find any defunct processes belonging to 654062
[2025-11-26 21:30:35] 2025-11-27 02:29:52,722 | INFO     | did not find any defunct processes belonging to 654062
[2025-11-26 21:30:35] 2025-11-27 02:29:52,726 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:30:35] 2025-11-27 02:29:52,727 | INFO     | ready for new job
[2025-11-26 21:30:35] 2025-11-27 02:29:52,727 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:30:35] 2025-11-27 02:29:52,741 | INFO     | ***************************************
[2025-11-26 21:30:35] 2025-11-27 02:29:52,742 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:30:35] 2025-11-27 02:29:52,742 | INFO     | ***************************************
[2025-11-26 21:30:35] 2025-11-27 02:29:52,742 | INFO     | 
[2025-11-26 21:30:35] 2025-11-27 02:29:52,752 | INFO     | architecture information:
[2025-11-26 21:30:35] 2025-11-27 02:29:52,758 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:30:35] 2025-11-27 02:29:52,854 | INFO     | cat /etc/os-release:
[2025-11-26 21:30:35] NAME="CentOS Linux"
[2025-11-26 21:30:35] VERSION="7 (Core)"
[2025-11-26 21:30:35] ID="centos"
[2025-11-26 21:30:35] ID_LIKE="rhel fedora"
[2025-11-26 21:30:35] VERSION_ID="7"
[2025-11-26 21:30:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:30:35] ANSI_COLOR="0;31"
[2025-11-26 21:30:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:30:35] HOME_URL="https://www.centos.org/"
[2025-11-26 21:30:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:30:35] 
[2025-11-26 21:30:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:30:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:30:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:30:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:30:35] 
[2025-11-26 21:30:35] 2025-11-27 02:29:52,854 | INFO     | ***************************************
[2025-11-26 21:30:35] 2025-11-27 02:29:53,358 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 21:30:35] 2025-11-27 02:29:53,547 | INFO     | sufficient remaining disk space (67760029696 B)
[2025-11-26 21:30:35] 2025-11-27 02:29:53,547 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:30:35] 2025-11-27 02:29:53,548 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:30:35] 2025-11-27 02:29:53,548 | INFO     | update_server=False
[2025-11-26 21:30:35] 2025-11-27 02:29:53,548 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:30:35] 2025-11-27 02:29:53,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:30:35] 2025-11-27 02:29:53,793 | INFO     | all job control threads have been joined
[2025-11-26 21:30:35] 2025-11-27 02:29:53,844 | INFO     | all payload control threads have been joined
[2025-11-26 21:30:35] 2025-11-27 02:29:54,407 | INFO     | all data control threads have been joined
[2025-11-26 21:30:35] 2025-11-27 02:29:54,525 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:30:35] 2025-11-27 02:29:54,526 | INFO     | aborting loop
[2025-11-26 21:30:35] 2025-11-27 02:29:54,554 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:54,800 | INFO     | [job] control thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:54,851 | INFO     | [payload] control thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:54,897 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:54,897 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:54,907 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:54,922 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:54,922 | INFO     | [job] validate thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:55,019 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:55,019 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:55,145 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:30:35] 2025-11-27 02:29:55,414 | INFO     | [data] control thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:55,532 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:55,564 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:55,982 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:30:35] 2025-11-27 02:29:56,039 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:57,011 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:29:59,154 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:30:35] 2025-11-27 02:30:24,545 | INFO     | PID=640045 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 21:30:35] 2025-11-27 02:30:24,557 | INFO     | .. there are 40 such processes running
[2025-11-26 21:30:35] 2025-11-27 02:30:24,558 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:30:35] 2025-11-27 02:30:24,558 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:30:35] 2025-11-27 02:30:24,558 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:30:35] 2025-11-27 02:30:26,688 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:30:35] 2025-11-27 02:30:27,901 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139992653322048)>', '<ExcThread(monitor, started 139991564936960)>']
[2025-11-26 21:30:35] 2025-11-27 02:30:28,583 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:30:35] 2025-11-27 02:30:28,584 | INFO     | [monitor] control thread has ended
[2025-11-26 21:30:35] 2025-11-27 02:30:32,928 | INFO     | all workflow threads have been joined
[2025-11-26 21:30:35] 2025-11-27 02:30:32,928 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:30:35] 2025-11-27 02:30:32,928 | INFO     | traces error code: 0
[2025-11-26 21:30:35] 2025-11-27 02:30:32,929 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:30:35] 2025-11-27 02:30:34,129 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:30:35] 2025-11-27 02:30:34,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:30:35] 2025-11-27 02:30:34,159 [wrapper] pilotpid: 640045
[2025-11-26 21:30:35] 2025-11-27 02:30:34,174 [wrapper] Pilot exit status: 0
[2025-11-26 21:30:35] 2025-11-27 02:30:34,338 [wrapper] pandaids: 6896450847
[2025-11-26 21:30:35] 2025-11-27 02:30:34,576 [wrapper] cleanup supervisor_pilot 2310741 640046
[2025-11-26 21:30:35] 2025-11-27 02:30:34,585 [wrapper] Test setup, not cleaning
[2025-11-26 21:30:35] 2025-11-27 02:30:34,589 [wrapper] apfmon messages muted
[2025-11-26 21:30:35] 2025-11-27 02:30:34,593 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:30:35] 2025-11-27 02:30:34,597 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:30:35]  *** Error codes and diagnostics ***
[2025-11-26 21:30:35]     "exeErrorCode": 0,
[2025-11-26 21:30:35]     "exeErrorDiag": "",
[2025-11-26 21:30:35]     "pilotErrorCode": 0,
[2025-11-26 21:30:35]     "pilotErrorDiag": "",
[2025-11-26 21:30:35]  *** Listing of results directory ***
[2025-11-26 21:30:35] total 1328668
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 22:04 pilot3.tar.gz
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 23:02 queuedata.json
[2025-11-26 21:30:35] -rwx------ 1 boincer umatlas     36292 Nov 24 23:04 runpilot2-wrapper.sh
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas       100 Nov 25 17:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:30:35] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 17:54 run_atlas
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas       105 Nov 25 17:54 job.xml
[2025-11-26 21:30:35] -rw-r--r-- 2 boincer umatlas 409018121 Nov 25 17:54 EVNT.47483658._001501.pool.root.1
[2025-11-26 21:30:35] drwxrwx--x 2 boincer umatlas      4096 Nov 25 17:54 shared
[2025-11-26 21:30:35] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 17:54 input.tar.gz
[2025-11-26 21:30:35] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 17:54 start_atlas.sh
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas         0 Nov 25 17:54 boinc_lockfile
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 17:54 pandaJob.out
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas        57 Nov 25 17:54 setup.sh.local
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas    991877 Nov 25 17:55 agis_schedconf.cvmfs.json
[2025-11-26 21:30:35] drwx------ 5 boincer umatlas      4096 Nov 25 17:55 pilot3
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas       533 Nov 26 20:59 boinc_task_state.xml
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas      6878 Nov 26 21:18 init_data.xml
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas 919004201 Nov 26 21:26 HITS.47556149._004873.pool.root.1
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas      1059 Nov 26 21:28 memory_monitor_summary.json
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas   1516240 Nov 26 21:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas   2534710 Nov 26 21:29 log.47556149._004873.job.log.tgz.1
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas      8619 Nov 26 21:29 heartbeat.json
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas        95 Nov 26 21:30 pilot_heartbeat.json
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 21:30 boinc_mmap_file
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas        29 Nov 26 21:30 wrapper_checkpoint.txt
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas      4823 Nov 26 21:30 pilotlog.txt
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas  11774950 Nov 26 21:30 log.47556149._004873.job.log.1
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas       353 Nov 26 21:30 output.list
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas       620 Nov 26 21:30 runtime_log
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas  14325760 Nov 26 21:30 result.tar.gz
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 21:30 runtime_log.err
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas       661 Nov 26 21:30 bLHNDmYTzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDma6LKDmNqvNdn.diag
[2025-11-26 21:30:35] -rw-r--r-- 1 boincer umatlas     21889 Nov 26 21:30 stderr.txt
[2025-11-26 21:30:35] HITS file was successfully produced:
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas 919004201 Nov 26 21:26 shared/HITS.pool.root.1
[2025-11-26 21:30:35]  *** Contents of shared directory: ***
[2025-11-26 21:30:35] total 1311492
[2025-11-26 21:30:35] -rw-r--r-- 2 boincer umatlas 409018121 Nov 25 17:54 ATLAS.root_0
[2025-11-26 21:30:35] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 17:54 input.tar.gz
[2025-11-26 21:30:35] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 17:54 start_atlas.sh
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas 919004201 Nov 26 21:26 HITS.pool.root.1
[2025-11-26 21:30:35] -rw------- 1 boincer umatlas  14325760 Nov 26 21:30 result.tar.gz
21:30:37 (632228): run_atlas exited; CPU time 285302.294604
21:30:37 (632228): called boinc_finish(0)

</stderr_txt>
]]>

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