Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:41:43 (7336): wrapper (7.7.26015): starting
18:41:43 (7336): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 18:41:43] Arguments: --nthreads 8
[2025-11-25 18:41:43] Threads: 8
[2025-11-25 18:41:43] Checking for CVMFS
[2025-11-25 18:41:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:41:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:41:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:41:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:41:43] 2.11.2.0 14729 116901 145272 153302 2 90 17167891 18432000 1725 130560 0 84819011 99.974 4856685 29373 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 18:41:43] CVMFS is ok
[2025-11-25 18:41:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:41:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:41:43] Further information can be found at the LHC@home message board.
[2025-11-25 18:41:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:41:43] Checking for apptainer binary...
[2025-11-25 18:41:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:41:43] Running /usr/bin/apptainer --version
[2025-11-25 18:41:43] apptainer version 1.3.2-1.el7
[2025-11-25 18:41:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:41:44] c-206-30.aglt2.org
[2025-11-25 18:41:44] apptainer works
[2025-11-25 18:41:44] Set ATHENA_PROC_NUMBER=8
[2025-11-25 18:41:44] Set ATHENA_CORE_NUMBER=8
[2025-11-25 18:41:44] Starting ATLAS job with PandaID=6896450840
[2025-11-25 18:41:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:53:55]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:53:55] 2025-11-26 18:53:13,299 | INFO     | time since job start (69078s) is within the limit (172800.0s)
[2025-11-26 13:53:55] 2025-11-26 18:53:13,911 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 13:53:55] 2025-11-26 18:53:13,917 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2106.2916666666665
[2025-11-26 13:53:55] 2025-11-26 18:53:13,921 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896450840/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:53:55] 2025-11-26 18:53:13,922 | INFO     | extracted standard info from prmon json
[2025-11-26 13:53:55] 2025-11-26 18:53:13,922 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:53:55] 2025-11-26 18:53:13,922 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:53:55] 2025-11-26 18:53:13,938 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:53:55] 2025-11-26 18:53:13,939 | INFO     | sum of square deviations: 449796991571.5901
[2025-11-26 13:53:55] 2025-11-26 18:53:13,964 | INFO     | sum of deviations: 2390826128382.568
[2025-11-26 13:53:55] 2025-11-26 18:53:13,964 | INFO     | mean x: 1764148638.1342757
[2025-11-26 13:53:55] 2025-11-26 18:53:13,965 | INFO     | mean y: 2862849.7199646644
[2025-11-26 13:53:55] 2025-11-26 18:53:13,965 | INFO     | intersect: -9374195550.926643
[2025-11-26 13:53:55] 2025-11-26 18:53:13,966 | INFO     | chi2: 4.981720865349399
[2025-11-26 13:53:55] 2025-11-26 18:53:13,967 | INFO     | sum of square deviations: 443863276044.5693
[2025-11-26 13:53:55] 2025-11-26 18:53:13,991 | INFO     | sum of deviations: 2695612316295.2603
[2025-11-26 13:53:55] 2025-11-26 18:53:13,992 | INFO     | mean x: 1764148485.6370897
[2025-11-26 13:53:55] 2025-11-26 18:53:13,992 | INFO     | mean y: 2870678.677905945
[2025-11-26 13:53:55] 2025-11-26 18:53:13,992 | INFO     | intersect: -10710924857.719355
[2025-11-26 13:53:55] 2025-11-26 18:53:13,993 | INFO     | chi2: 2.7352177389248675
[2025-11-26 13:53:55] 2025-11-26 18:53:13,993 | INFO     | current chi2=2.7352177389248675 (change=45.0949217578647 %)
[2025-11-26 13:53:55] 2025-11-26 18:53:13,994 | INFO     | sum of square deviations: 437981980105.0301
[2025-11-26 13:53:55] 2025-11-26 18:53:14,020 | INFO     | sum of deviations: 2751920742933.9224
[2025-11-26 13:53:55] 2025-11-26 18:53:14,020 | INFO     | mean x: 1764148333.1399288
[2025-11-26 13:53:55] 2025-11-26 18:53:14,021 | INFO     | mean y: 2872134.497326203
[2025-11-26 13:53:55] 2025-11-26 18:53:14,021 | INFO     | intersect: -11081593921.425503
[2025-11-26 13:53:55] 2025-11-26 18:53:14,022 | INFO     | chi2: 2.506311429600945
[2025-11-26 13:53:55] 2025-11-26 18:53:14,022 | INFO     | current chi2=2.506311429600945 (change=8.368851447047815 %)
[2025-11-26 13:53:55] 2025-11-26 18:53:14,022 | INFO     | right removable region: 1121
[2025-11-26 13:53:55] 2025-11-26 18:53:14,023 | INFO     | sum of square deviations: 443862838064.56885
[2025-11-26 13:53:55] 2025-11-26 18:53:14,055 | INFO     | sum of deviations: 2086770972554.7363
[2025-11-26 13:53:55] 2025-11-26 18:53:14,055 | INFO     | mean x: 1764148790.6370897
[2025-11-26 13:53:55] 2025-11-26 18:53:14,055 | INFO     | mean y: 2870655.322094055
[2025-11-26 13:53:55] 2025-11-26 18:53:14,055 | INFO     | intersect: -8291075518.728843
[2025-11-26 13:53:55] 2025-11-26 18:53:14,056 | INFO     | chi2: 2.84245142033458
[2025-11-26 13:53:55] 2025-11-26 18:53:14,057 | INFO     | current chi2=2.84245142033458 (change=42.94237880517577 %)
[2025-11-26 13:53:55] 2025-11-26 18:53:14,058 | INFO     | sum of square deviations: 437981378890.1366
[2025-11-26 13:53:55] 2025-11-26 18:53:14,089 | INFO     | sum of deviations: 1997150264904.9082
[2025-11-26 13:53:55] 2025-11-26 18:53:14,089 | INFO     | mean x: 1764148943.1363637
[2025-11-26 13:53:55] 2025-11-26 18:53:14,090 | INFO     | mean y: 2872978.771836007
[2025-11-26 13:53:55] 2025-11-26 18:53:14,090 | INFO     | intersect: -8041465659.652975
[2025-11-26 13:53:55] 2025-11-26 18:53:14,091 | INFO     | chi2: 2.7587551948613784
[2025-11-26 13:53:55] 2025-11-26 18:53:14,091 | INFO     | current chi2=2.7587551948613784 (change=2.9445085630821413 %)
[2025-11-26 13:53:55] 2025-11-26 18:53:14,091 | INFO     | left removable region: 20
[2025-11-26 13:53:55] 2025-11-26 18:53:14,092 | INFO     | sum of square deviations: 413846707015.00446
[2025-11-26 13:53:55] 2025-11-26 18:53:14,115 | INFO     | sum of deviations: 2229288475568.6724
[2025-11-26 13:53:55] 2025-11-26 18:53:14,115 | INFO     | mean x: 1764148912.6421435
[2025-11-26 13:53:55] 2025-11-26 18:53:14,116 | INFO     | mean y: 2885668.3088101726
[2025-11-26 13:53:55] 2025-11-26 18:53:14,116 | INFO     | intersect: -9500142321.225363
[2025-11-26 13:53:55] 2025-11-26 18:53:14,117 | INFO     | chi2: 0.22799920835380325
[2025-11-26 13:53:55] 2025-11-26 18:53:14,117 | INFO     | current memory leak: 5.39 B/s (using 1101 data points, chi2=0.23)
[2025-11-26 13:53:55] 2025-11-26 18:53:14,118 | INFO     | could have reported an average CPU frequency of 2623 MHz (41 samples)
[2025-11-26 13:53:55] 2025-11-26 18:53:14,118 | INFO     | ..............................
[2025-11-26 13:53:55] 2025-11-26 18:53:14,118 | INFO     | . Timing measurements:
[2025-11-26 13:53:55] 2025-11-26 18:53:14,118 | INFO     | . get job = 0 s
[2025-11-26 13:53:55] 2025-11-26 18:53:14,118 | INFO     | . initial setup = 2 s
[2025-11-26 13:53:55] 2025-11-26 18:53:14,118 | INFO     | . payload setup = 5 s
[2025-11-26 13:53:55] 2025-11-26 18:53:14,118 | INFO     | . stage-in = 0 s
[2025-11-26 13:53:55] 2025-11-26 18:53:14,118 | INFO     | . payload execution = 69040 s
[2025-11-26 13:53:55] 2025-11-26 18:53:14,119 | INFO     | . stage-out = 3 s
[2025-11-26 13:53:55] 2025-11-26 18:53:14,119 | INFO     | . log creation = 0 s
[2025-11-26 13:53:55] 2025-11-26 18:53:14,119 | INFO     | ..............................
[2025-11-26 13:53:55] 2025-11-26 18:53:14,199 | INFO     | 
[2025-11-26 13:53:55] 2025-11-26 18:53:14,199 | INFO     | job summary report
[2025-11-26 13:53:55] 2025-11-26 18:53:14,199 | INFO     | --------------------------------------------------
[2025-11-26 13:53:55] 2025-11-26 18:53:14,200 | INFO     | PanDA job id: 6896450840
[2025-11-26 13:53:55] 2025-11-26 18:53:14,200 | INFO     | task id: 47556149
[2025-11-26 13:53:55] 2025-11-26 18:53:14,200 | INFO     | errors: (none)
[2025-11-26 13:53:55] 2025-11-26 18:53:14,200 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:53:55] 2025-11-26 18:53:14,200 | INFO     | pilot state: finished 
[2025-11-26 13:53:55] 2025-11-26 18:53:14,200 | INFO     | transexitcode: 0
[2025-11-26 13:53:55] 2025-11-26 18:53:14,200 | INFO     | exeerrorcode: 0
[2025-11-26 13:53:55] 2025-11-26 18:53:14,200 | INFO     | exeerrordiag: 
[2025-11-26 13:53:55] 2025-11-26 18:53:14,200 | INFO     | exitcode: 0
[2025-11-26 13:53:55] 2025-11-26 18:53:14,201 | INFO     | exitmsg: OK
[2025-11-26 13:53:55] 2025-11-26 18:53:14,201 | INFO     | cpuconsumptiontime: 534154 s
[2025-11-26 13:53:55] 2025-11-26 18:53:14,201 | INFO     | nevents: 1000
[2025-11-26 13:53:55] 2025-11-26 18:53:14,201 | INFO     | neventsw: 0
[2025-11-26 13:53:55] 2025-11-26 18:53:14,201 | INFO     | pid: 17563
[2025-11-26 13:53:55] 2025-11-26 18:53:14,201 | INFO     | pgrp: 17563
[2025-11-26 13:53:55] 2025-11-26 18:53:14,201 | INFO     | corecount: 8
[2025-11-26 13:53:55] 2025-11-26 18:53:14,201 | INFO     | event service: False
[2025-11-26 13:53:55] 2025-11-26 18:53:14,201 | INFO     | sizes: {0: 2284144, 1: 2284343, 2: 2284343, 4: 2284633, 12: 2284661, 69048: 2340720, 69049: 2340847, 69053: 2349897, 69056: 2349953, 69062: 2350295}
[2025-11-26 13:53:55] 2025-11-26 18:53:14,201 | INFO     | --------------------------------------------------
[2025-11-26 13:53:55] 2025-11-26 18:53:14,202 | INFO     | 
[2025-11-26 13:53:55] 2025-11-26 18:53:14,202 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 13:53:55] 2025-11-26 18:53:14,224 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,224 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,225 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,225 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,225 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,225 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,225 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,226 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,226 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,226 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,227 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,227 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,227 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,227 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,227 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,227 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:53:55] 2025-11-26 18:53:14,228 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,228 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:53:55] 2025-11-26 18:53:14,228 | INFO     | job 6896450840 has completed (purged errors)
[2025-11-26 13:53:55] 2025-11-26 18:53:14,228 | INFO     | overall cleanup function is called
[2025-11-26 13:53:55] 2025-11-26 18:53:14,444 | INFO     | PID=11021 has CPU usage=12.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 13:53:55] 2025-11-26 18:53:14,444 | INFO     | .. there are 3 such processes running
[2025-11-26 13:53:55] 2025-11-26 18:53:15,245 | INFO     | --- collectZombieJob: --- 10, [17563]
[2025-11-26 13:53:55] 2025-11-26 18:53:15,246 | INFO     | zombie collector waiting for pid 17563
[2025-11-26 13:53:55] 2025-11-26 18:53:15,246 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:53:55] 2025-11-26 18:53:15,246 | INFO     | collected zombie processes
[2025-11-26 13:53:55] 2025-11-26 18:53:15,246 | INFO     | will attempt to kill all subprocesses of pid=17563
[2025-11-26 13:53:55] 2025-11-26 18:53:15,384 | INFO     | process IDs to be killed: [17563] (in reverse order)
[2025-11-26 13:53:55] 2025-11-26 18:53:15,428 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:53:55] 2025-11-26 18:53:15,429 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:53:55] 2025-11-26 18:53:15,432 | INFO     | did not find any defunct processes belonging to 17563
[2025-11-26 13:53:55] 2025-11-26 18:53:15,434 | INFO     | did not find any defunct processes belonging to 17563
[2025-11-26 13:53:55] 2025-11-26 18:53:15,436 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:53:55] 2025-11-26 18:53:15,436 | INFO     | ready for new job
[2025-11-26 13:53:55] 2025-11-26 18:53:15,436 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:53:55] 2025-11-26 18:53:15,441 | INFO     | ***************************************
[2025-11-26 13:53:55] 2025-11-26 18:53:15,441 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:53:55] 2025-11-26 18:53:15,441 | INFO     | ***************************************
[2025-11-26 13:53:55] 2025-11-26 18:53:15,441 | INFO     | 
[2025-11-26 13:53:55] 2025-11-26 18:53:15,442 | INFO     | architecture information:
[2025-11-26 13:53:55] 2025-11-26 18:53:15,442 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:53:55] 2025-11-26 18:53:15,454 | INFO     | cat /etc/os-release:
[2025-11-26 13:53:55] NAME="CentOS Linux"
[2025-11-26 13:53:55] VERSION="7 (Core)"
[2025-11-26 13:53:55] ID="centos"
[2025-11-26 13:53:55] ID_LIKE="rhel fedora"
[2025-11-26 13:53:55] VERSION_ID="7"
[2025-11-26 13:53:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:53:55] ANSI_COLOR="0;31"
[2025-11-26 13:53:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:53:55] HOME_URL="https://www.centos.org/"
[2025-11-26 13:53:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:53:55] 
[2025-11-26 13:53:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:53:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:53:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:53:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:53:55] 
[2025-11-26 13:53:55] 2025-11-26 18:53:15,454 | INFO     | ***************************************
[2025-11-26 13:53:55] 2025-11-26 18:53:15,958 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 13:53:55] 2025-11-26 18:53:15,971 | INFO     | sufficient remaining disk space (25252855808 B)
[2025-11-26 13:53:55] 2025-11-26 18:53:15,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:53:55] 2025-11-26 18:53:15,972 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:53:55] 2025-11-26 18:53:15,972 | INFO     | update_server=False
[2025-11-26 13:53:55] 2025-11-26 18:53:15,972 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:53:55] 2025-11-26 18:53:15,972 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:53:55] 2025-11-26 18:53:15,972 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:53:55] 2025-11-26 18:53:15,972 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:53:55] 2025-11-26 18:53:15,973 | INFO     | aborting loop
[2025-11-26 13:53:55] 2025-11-26 18:53:16,196 | INFO     | all data control threads have been joined
[2025-11-26 13:53:55] 2025-11-26 18:53:16,409 | INFO     | all job control threads have been joined
[2025-11-26 13:53:55] 2025-11-26 18:53:16,592 | INFO     | all payload control threads have been joined
[2025-11-26 13:53:55] 2025-11-26 18:53:16,974 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:16,976 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:16,978 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:17,034 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:17,049 | INFO     | [job] validate thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:17,064 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:17,201 | INFO     | [data] control thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:17,414 | INFO     | [job] control thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:17,497 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:17,598 | INFO     | [payload] control thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:17,699 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:17,915 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:17,978 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:18,128 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:18,129 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:18,516 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:53:55] 2025-11-26 18:53:22,522 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:53:55] 2025-11-26 18:53:46,651 | INFO     | PID=11021 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 13:53:55] 2025-11-26 18:53:46,651 | INFO     | .. there are 3 such processes running
[2025-11-26 13:53:55] 2025-11-26 18:53:46,652 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:53:55] 2025-11-26 18:53:46,652 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:53:55] 2025-11-26 18:53:46,652 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:53:55] 2025-11-26 18:53:50,078 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:53:55] 2025-11-26 18:53:50,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140393750472512)>', '<ExcThread(monitor, started 140393303742208)>']
[2025-11-26 13:53:55] 2025-11-26 18:53:50,673 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:53:55] 2025-11-26 18:53:50,673 | INFO     | [monitor] control thread has ended
[2025-11-26 13:53:55] 2025-11-26 18:53:55,456 | INFO     | all workflow threads have been joined
[2025-11-26 13:53:55] 2025-11-26 18:53:55,457 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:53:55] 2025-11-26 18:53:55,457 | INFO     | traces error code: 0
[2025-11-26 13:53:55] 2025-11-26 18:53:55,457 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:53:55] 2025-11-26 18:53:55,542 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:53:55] 2025-11-26 18:53:55,545 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:53:55] 2025-11-26 18:53:55,548 [wrapper] pilotpid: 11021
[2025-11-26 13:53:55] 2025-11-26 18:53:55,551 [wrapper] Pilot exit status: 0
[2025-11-26 13:53:55] 2025-11-26 18:53:55,561 [wrapper] pandaids: 6896450840
[2025-11-26 13:53:55] 2025-11-26 18:53:55,598 [wrapper] cleanup supervisor_pilot 32503 11022
[2025-11-26 13:53:55] 2025-11-26 18:53:55,601 [wrapper] Test setup, not cleaning
[2025-11-26 13:53:55] 2025-11-26 18:53:55,604 [wrapper] apfmon messages muted
[2025-11-26 13:53:55] 2025-11-26 18:53:55,607 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:53:55] 2025-11-26 18:53:55,609 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:53:55]  *** Error codes and diagnostics ***
[2025-11-26 13:53:55]     "exeErrorCode": 0,
[2025-11-26 13:53:55]     "exeErrorDiag": "",
[2025-11-26 13:53:55]     "pilotErrorCode": 0,
[2025-11-26 13:53:55]     "pilotErrorDiag": "",
[2025-11-26 13:53:55]  *** Listing of results directory ***
[2025-11-26 13:53:55] total 1315372
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 22:04 pilot3.tar.gz
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 23:02 queuedata.json
[2025-11-26 13:53:55] -rwx------ 1 boincer umatlas     36292 Nov 24 23:04 runpilot2-wrapper.sh
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas       100 Nov 25 18:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:53:55] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 18:41 run_atlas
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas       105 Nov 25 18:41 job.xml
[2025-11-26 13:53:55] -rw-r--r-- 2 boincer umatlas 408476508 Nov 25 18:41 EVNT.47483658._001500.pool.root.1
[2025-11-26 13:53:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 18:41 start_atlas.sh
[2025-11-26 13:53:55] drwxrwx--x 2 boincer umatlas      4096 Nov 25 18:41 shared
[2025-11-26 13:53:55] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 18:41 input.tar.gz
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas         0 Nov 25 18:41 boinc_lockfile
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 18:41 pandaJob.out
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas        57 Nov 25 18:41 setup.sh.local
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas    991877 Nov 25 18:41 agis_schedconf.cvmfs.json
[2025-11-26 13:53:55] drwx------ 5 boincer umatlas      4096 Nov 25 18:41 pilot3
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas       533 Nov 26 13:44 boinc_task_state.xml
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas      5954 Nov 26 13:49 init_data.xml
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas 910866319 Nov 26 13:52 HITS.47556149._004866.pool.root.1
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas      1064 Nov 26 13:52 memory_monitor_summary.json
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas   1516240 Nov 26 13:53 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas   2292323 Nov 26 13:53 log.47556149._004866.job.log.tgz.1
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas      8661 Nov 26 13:53 heartbeat.json
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas        95 Nov 26 13:53 pilot_heartbeat.json
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 13:53 boinc_mmap_file
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas        29 Nov 26 13:53 wrapper_checkpoint.txt
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas      4821 Nov 26 13:53 pilotlog.txt
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas   9550510 Nov 26 13:53 log.47556149._004866.job.log.1
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas       353 Nov 26 13:53 output.list
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas       620 Nov 26 13:53 runtime_log
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas  11857920 Nov 26 13:53 result.tar.gz
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 13:53 runtime_log.err
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas       668 Nov 26 13:53 Q18MDmYTzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmU6LKDm3cPpOn.diag
[2025-11-26 13:53:55] -rw-r--r-- 1 boincer umatlas     21398 Nov 26 13:53 stderr.txt
[2025-11-26 13:53:55] HITS file was successfully produced:
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas 910866319 Nov 26 13:52 shared/HITS.pool.root.1
[2025-11-26 13:53:55]  *** Contents of shared directory: ***
[2025-11-26 13:53:55] total 1300604
[2025-11-26 13:53:55] -rw-r--r-- 2 boincer umatlas 408476508 Nov 25 18:41 ATLAS.root_0
[2025-11-26 13:53:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 18:41 start_atlas.sh
[2025-11-26 13:53:55] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 18:41 input.tar.gz
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas 910866319 Nov 26 13:52 HITS.pool.root.1
[2025-11-26 13:53:55] -rw------- 1 boincer umatlas  11857920 Nov 26 13:53 result.tar.gz
13:53:56 (7336): run_atlas exited; CPU time 533006.322946
13:53:56 (7336): called boinc_finish(0)

</stderr_txt>
]]>

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