Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:26:55 (989212): wrapper (7.7.26015): starting
19:26:55 (989212): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:26:55] Arguments: --nthreads 8
[2025-11-25 19:26:55] Threads: 8
[2025-11-25 19:26:55] Checking for CVMFS
[2025-11-25 19:26:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:26:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:26:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:26:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:26:56] 2.13.3.0 10299 29328 382692 153303 0 140 25178607 32935937 51493 16776704 0 288990699 99.814 133224464 28784 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:26:56] CVMFS is ok
[2025-11-25 19:26:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:26:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:26:56] Further information can be found at the LHC@home message board.
[2025-11-25 19:26:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:26:56] Checking for apptainer binary...
[2025-11-25 19:26:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:26:56] Running /usr/bin/apptainer --version
[2025-11-25 19:26:57] apptainer version 1.4.4-1.el9
[2025-11-25 19:26:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:26:57] c-3-40.aglt2.org
[2025-11-25 19:26:57] apptainer works
[2025-11-25 19:26:57] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:26:57] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:26:57] Starting ATLAS job with PandaID=6896450940
[2025-11-25 19:26:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:17:27]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:17:27] 2025-11-26 19:16:41,513 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:17:27] 2025-11-26 19:16:41,515 | INFO     | sum of square deviations: 424073097110.12964
[2025-11-26 14:17:27] 2025-11-26 19:16:41,552 | INFO     | sum of deviations: 2665252370358.5684
[2025-11-26 14:17:27] 2025-11-26 19:16:41,552 | INFO     | mean x: 1764150725.535135
[2025-11-26 14:17:27] 2025-11-26 19:16:41,552 | INFO     | mean y: 2882627.9855855857
[2025-11-26 14:17:27] 2025-11-26 19:16:41,552 | INFO     | intersect: -11084608974.154987
[2025-11-26 14:17:27] 2025-11-26 19:16:41,554 | INFO     | chi2: 13.38776038661633
[2025-11-26 14:17:27] 2025-11-26 19:16:41,555 | INFO     | sum of square deviations: 418368419652.24774
[2025-11-26 14:17:27] 2025-11-26 19:16:41,583 | INFO     | sum of deviations: 3064318553960.872
[2025-11-26 14:17:27] 2025-11-26 19:16:41,584 | INFO     | mean x: 1764150573.039819
[2025-11-26 14:17:27] 2025-11-26 19:16:41,584 | INFO     | mean y: 2893294.7755656107
[2025-11-26 14:17:27] 2025-11-26 19:16:41,584 | INFO     | intersect: -12918539296.71898
[2025-11-26 14:17:27] 2025-11-26 19:16:41,585 | INFO     | chi2: 9.844616751310205
[2025-11-26 14:17:27] 2025-11-26 19:16:41,585 | INFO     | current chi2=9.844616751310205 (change=26.46554414619032 %)
[2025-11-26 14:17:27] 2025-11-26 19:16:41,587 | INFO     | sum of square deviations: 412715071346.9084
[2025-11-26 14:17:27] 2025-11-26 19:16:41,624 | INFO     | sum of deviations: 3352898502541.5137
[2025-11-26 14:17:27] 2025-11-26 19:16:41,624 | INFO     | mean x: 1764150420.5436363
[2025-11-26 14:17:27] 2025-11-26 19:16:41,624 | INFO     | mean y: 2901072.0727272728
[2025-11-26 14:17:27] 2025-11-26 19:16:41,624 | INFO     | intersect: -14329062342.771559
[2025-11-26 14:17:27] 2025-11-26 19:16:41,625 | INFO     | chi2: 7.665210411724347
[2025-11-26 14:17:27] 2025-11-26 19:16:41,626 | INFO     | current chi2=7.665210411724347 (change=22.138051634115712 %)
[2025-11-26 14:17:27] 2025-11-26 19:16:41,626 | INFO     | right removable region: 1099
[2025-11-26 14:17:27] 2025-11-26 19:16:41,627 | INFO     | sum of square deviations: 418367718762.24817
[2025-11-26 14:17:27] 2025-11-26 19:16:41,657 | INFO     | sum of deviations: 2241190871685.766
[2025-11-26 14:17:27] 2025-11-26 19:16:41,658 | INFO     | mean x: 1764150878.039819
[2025-11-26 14:17:27] 2025-11-26 19:16:41,658 | INFO     | mean y: 2893960.028054299
[2025-11-26 14:17:27] 2025-11-26 19:16:41,658 | INFO     | intersect: -9447641219.494612
[2025-11-26 14:17:27] 2025-11-26 19:16:41,659 | INFO     | chi2: 9.603245729113254
[2025-11-26 14:17:27] 2025-11-26 19:16:41,668 | INFO     | current chi2=9.603245729113254 (change=28.26846722836804 %)
[2025-11-26 14:17:27] 2025-11-26 19:16:41,670 | INFO     | sum of square deviations: 412713736726.8171
[2025-11-26 14:17:27] 2025-11-26 19:16:41,716 | INFO     | sum of deviations: 1872510002342.941
[2025-11-26 14:17:27] 2025-11-26 19:16:41,716 | INFO     | mean x: 1764151030.5445454
[2025-11-26 14:17:27] 2025-11-26 19:16:41,716 | INFO     | mean y: 2903900.307272727
[2025-11-26 14:17:27] 2025-11-26 19:16:41,717 | INFO     | intersect: -8001168066.2259
[2025-11-26 14:17:27] 2025-11-26 19:16:41,718 | INFO     | chi2: 6.810149928880667
[2025-11-26 14:17:27] 2025-11-26 19:16:41,718 | INFO     | current chi2=6.810149928880667 (change=29.084914403106676 %)
[2025-11-26 14:17:27] 2025-11-26 19:16:41,720 | INFO     | sum of square deviations: 407111052643.53015
[2025-11-26 14:17:27] 2025-11-26 19:16:41,781 | INFO     | sum of deviations: 1750443729176.083
[2025-11-26 14:17:27] 2025-11-26 19:16:41,781 | INFO     | mean x: 1764151183.0474887
[2025-11-26 14:17:27] 2025-11-26 19:16:41,781 | INFO     | mean y: 2907219.5753424657
[2025-11-26 14:17:27] 2025-11-26 19:16:41,781 | INFO     | intersect: -7582363078.620087
[2025-11-26 14:17:27] 2025-11-26 19:16:41,783 | INFO     | chi2: 6.522040957311885
[2025-11-26 14:17:27] 2025-11-26 19:16:41,783 | INFO     | current chi2=6.522040957311885 (change=4.230581919304903 %)
[2025-11-26 14:17:27] 2025-11-26 19:16:41,783 | INFO     | left removable region: 30
[2025-11-26 14:17:27] 2025-11-26 19:16:41,784 | INFO     | sum of square deviations: 378794232133.67456
[2025-11-26 14:17:27] 2025-11-26 19:16:41,845 | INFO     | sum of deviations: 2301883503378.235
[2025-11-26 14:17:27] 2025-11-26 19:16:41,846 | INFO     | mean x: 1764151305.0636108
[2025-11-26 14:17:27] 2025-11-26 19:16:41,846 | INFO     | mean y: 2932136.540692236
[2025-11-26 14:17:27] 2025-11-26 19:16:41,846 | INFO     | intersect: -10717586926.579702
[2025-11-26 14:17:27] 2025-11-26 19:16:41,852 | INFO     | chi2: 0.4426621581727148
[2025-11-26 14:17:27] 2025-11-26 19:16:41,852 | INFO     | current memory leak: 6.08 B/s (using 1069 data points, chi2=0.44)
[2025-11-26 14:17:27] 2025-11-26 19:16:41,853 | INFO     | could have reported an average CPU frequency of 2951 MHz (40 samples)
[2025-11-26 14:17:27] 2025-11-26 19:16:41,853 | INFO     | ..............................
[2025-11-26 14:17:27] 2025-11-26 19:16:41,853 | INFO     | . Timing measurements:
[2025-11-26 14:17:27] 2025-11-26 19:16:41,854 | INFO     | . get job = 0 s
[2025-11-26 14:17:27] 2025-11-26 19:16:41,854 | INFO     | . initial setup = 3 s
[2025-11-26 14:17:27] 2025-11-26 19:16:41,854 | INFO     | . payload setup = 13 s
[2025-11-26 14:17:27] 2025-11-26 19:16:41,854 | INFO     | . stage-in = 0 s
[2025-11-26 14:17:27] 2025-11-26 19:16:41,854 | INFO     | . payload execution = 67695 s
[2025-11-26 14:17:27] 2025-11-26 19:16:41,854 | INFO     | . stage-out = 4 s
[2025-11-26 14:17:27] 2025-11-26 19:16:41,854 | INFO     | . log creation = 1 s
[2025-11-26 14:17:27] 2025-11-26 19:16:41,854 | INFO     | ..............................
[2025-11-26 14:17:27] 2025-11-26 19:16:42,013 | INFO     | 
[2025-11-26 14:17:27] 2025-11-26 19:16:42,013 | INFO     | job summary report
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | --------------------------------------------------
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | PanDA job id: 6896450940
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | task id: 47556161
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | errors: (none)
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | pilot state: finished 
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | transexitcode: 0
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | exeerrorcode: 0
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | exeerrordiag: 
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | exitcode: 0
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | exitmsg: OK
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | cpuconsumptiontime: 250456 s
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | nevents: 1000
[2025-11-26 14:17:27] 2025-11-26 19:16:42,014 | INFO     | neventsw: 0
[2025-11-26 14:17:27] 2025-11-26 19:16:42,015 | INFO     | pid: 1017582
[2025-11-26 14:17:27] 2025-11-26 19:16:42,015 | INFO     | pgrp: 1017582
[2025-11-26 14:17:27] 2025-11-26 19:16:42,015 | INFO     | corecount: 8
[2025-11-26 14:17:27] 2025-11-26 19:16:42,015 | INFO     | event service: False
[2025-11-26 14:17:27] 2025-11-26 19:16:42,015 | INFO     | sizes: {0: 2284090, 1: 2284289, 12: 2284289, 13: 2284579, 23: 2284635, 67709: 2340285, 67714: 2349335, 67726: 2349525}
[2025-11-26 14:17:27] 2025-11-26 19:16:42,015 | INFO     | --------------------------------------------------
[2025-11-26 14:17:27] 2025-11-26 19:16:42,015 | INFO     | 
[2025-11-26 14:17:27] 2025-11-26 19:16:42,015 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 14:17:27] 2025-11-26 19:16:42,135 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,135 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,136 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,136 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,136 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,136 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,136 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,136 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,136 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,136 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,136 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,136 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,137 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,137 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,137 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,137 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,137 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,137 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:17:27] 2025-11-26 19:16:42,137 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,137 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:17:27] 2025-11-26 19:16:42,137 | INFO     | job 6896450940 has completed (purged errors)
[2025-11-26 14:17:27] 2025-11-26 19:16:42,138 | INFO     | overall cleanup function is called
[2025-11-26 14:17:27] 2025-11-26 19:16:42,351 | INFO     | PID=993680 has CPU usage=20.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 14:17:27] 2025-11-26 19:16:42,351 | INFO     | .. there are 78 such processes running
[2025-11-26 14:17:27] 2025-11-26 19:16:43,173 | INFO     | --- collectZombieJob: --- 10, [1017582]
[2025-11-26 14:17:27] 2025-11-26 19:16:43,173 | INFO     | zombie collector waiting for pid 1017582
[2025-11-26 14:17:27] 2025-11-26 19:16:43,173 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:17:27] 2025-11-26 19:16:43,173 | INFO     | collected zombie processes
[2025-11-26 14:17:27] 2025-11-26 19:16:43,173 | INFO     | will attempt to kill all subprocesses of pid=1017582
[2025-11-26 14:17:27] 2025-11-26 19:16:43,943 | INFO     | process IDs to be killed: [1017582] (in reverse order)
[2025-11-26 14:17:27] 2025-11-26 19:16:44,181 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:17:27] 2025-11-26 19:16:44,181 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:17:27] 2025-11-26 19:16:44,208 | INFO     | did not find any defunct processes belonging to 1017582
[2025-11-26 14:17:27] 2025-11-26 19:16:44,234 | INFO     | did not find any defunct processes belonging to 1017582
[2025-11-26 14:17:27] 2025-11-26 19:16:44,236 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:17:27] 2025-11-26 19:16:44,236 | INFO     | ready for new job
[2025-11-26 14:17:27] 2025-11-26 19:16:44,237 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:17:27] 2025-11-26 19:16:44,240 | INFO     | ***************************************
[2025-11-26 14:17:27] 2025-11-26 19:16:44,241 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:17:27] 2025-11-26 19:16:44,241 | INFO     | ***************************************
[2025-11-26 14:17:27] 2025-11-26 19:16:44,241 | INFO     | 
[2025-11-26 14:17:27] 2025-11-26 19:16:44,245 | INFO     | architecture information:
[2025-11-26 14:17:27] 2025-11-26 19:16:44,245 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:17:27] 2025-11-26 19:16:44,263 | INFO     | cat /etc/os-release:
[2025-11-26 14:17:27] NAME="CentOS Linux"
[2025-11-26 14:17:27] VERSION="7 (Core)"
[2025-11-26 14:17:27] ID="centos"
[2025-11-26 14:17:27] ID_LIKE="rhel fedora"
[2025-11-26 14:17:27] VERSION_ID="7"
[2025-11-26 14:17:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:17:27] ANSI_COLOR="0;31"
[2025-11-26 14:17:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:17:27] HOME_URL="https://www.centos.org/"
[2025-11-26 14:17:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:17:27] 
[2025-11-26 14:17:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:17:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:17:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:17:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:17:27] 
[2025-11-26 14:17:27] 2025-11-26 19:16:44,263 | INFO     | ***************************************
[2025-11-26 14:17:27] 2025-11-26 19:16:44,766 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 14:17:27] 2025-11-26 19:16:44,800 | INFO     | sufficient remaining disk space (66923266048 B)
[2025-11-26 14:17:27] 2025-11-26 19:16:44,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:17:27] 2025-11-26 19:16:44,804 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:17:27] 2025-11-26 19:16:44,804 | INFO     | update_server=False
[2025-11-26 14:17:27] 2025-11-26 19:16:44,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:17:27] 2025-11-26 19:16:44,805 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:17:27] 2025-11-26 19:16:44,915 | INFO     | all data control threads have been joined
[2025-11-26 14:17:27] 2025-11-26 19:16:44,916 | INFO     | all payload control threads have been joined
[2025-11-26 14:17:27] 2025-11-26 19:16:44,923 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:17:27] 2025-11-26 19:16:44,923 | INFO     | aborting loop
[2025-11-26 14:17:27] 2025-11-26 19:16:45,148 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:17:27] 2025-11-26 19:16:45,809 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:45,831 | INFO     | all job control threads have been joined
[2025-11-26 14:17:27] 2025-11-26 19:16:45,921 | INFO     | [data] control thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:45,921 | INFO     | [payload] control thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:45,928 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:46,197 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:46,418 | INFO     | [job] validate thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:46,484 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:46,660 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:46,837 | INFO     | [job] control thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:46,936 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:46,956 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:47,025 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:17:27] 2025-11-26 19:16:47,126 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:47,154 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:47,261 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:48,030 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:16:48,813 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:17:27] 2025-11-26 19:17:15,342 | INFO     | PID=993680 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 14:17:27] 2025-11-26 19:17:15,342 | INFO     | .. there are 78 such processes running
[2025-11-26 14:17:27] 2025-11-26 19:17:15,343 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:17:27] 2025-11-26 19:17:15,343 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:17:27] 2025-11-26 19:17:15,343 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:17:27] 2025-11-26 19:17:20,305 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:17:27] 2025-11-26 19:17:21,391 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140417926997824)>', '<ExcThread(monitor, started 140417278392064)>']
[2025-11-26 14:17:27] 2025-11-26 19:17:22,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:17:27] 2025-11-26 19:17:22,386 | INFO     | [monitor] control thread has ended
[2025-11-26 14:17:27] 2025-11-26 19:17:26,419 | INFO     | all workflow threads have been joined
[2025-11-26 14:17:27] 2025-11-26 19:17:26,419 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:17:27] 2025-11-26 19:17:26,419 | INFO     | traces error code: 0
[2025-11-26 14:17:27] 2025-11-26 19:17:26,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:17:27] 2025-11-26 19:17:26,620 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:17:27] 2025-11-26 19:17:26,663 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:17:27] 2025-11-26 19:17:26,681 [wrapper] pilotpid: 993680
[2025-11-26 14:17:27] 2025-11-26 19:17:26,697 [wrapper] Pilot exit status: 0
[2025-11-26 14:17:27] 2025-11-26 19:17:26,713 [wrapper] pandaids: 6896450940
[2025-11-26 14:17:27] 2025-11-26 19:17:26,847 [wrapper] cleanup supervisor_pilot 3090513 993681
[2025-11-26 14:17:27] 2025-11-26 19:17:26,851 [wrapper] Test setup, not cleaning
[2025-11-26 14:17:27] 2025-11-26 19:17:26,857 [wrapper] apfmon messages muted
[2025-11-26 14:17:27] 2025-11-26 19:17:26,860 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:17:27] 2025-11-26 19:17:26,864 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:17:27]  *** Error codes and diagnostics ***
[2025-11-26 14:17:27]     "exeErrorCode": 0,
[2025-11-26 14:17:27]     "exeErrorDiag": "",
[2025-11-26 14:17:27]     "pilotErrorCode": 0,
[2025-11-26 14:17:27]     "pilotErrorDiag": "",
[2025-11-26 14:17:27]  *** Listing of results directory ***
[2025-11-26 14:17:27] total 1308348
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:09 queuedata.json
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-26 14:17:27] -rwx------. 1 boincer umatlas     36292 Nov 24 23:09 runpilot2-wrapper.sh
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:17:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:26 run_atlas
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:26 job.xml
[2025-11-26 14:17:27] -rw-r--r--. 2 boincer umatlas 408743367 Nov 25 19:26 EVNT.47483658._002080.pool.root.1
[2025-11-26 14:17:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:26 start_atlas.sh
[2025-11-26 14:17:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:26 shared
[2025-11-26 14:17:27] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 19:26 input.tar.gz
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:26 boinc_lockfile
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 19:26 pandaJob.out
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas        57 Nov 25 19:26 setup.sh.local
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas    991877 Nov 25 19:27 agis_schedconf.cvmfs.json
[2025-11-26 14:17:27] drwx------. 5 boincer umatlas      4096 Nov 25 19:27 pilot3
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas       533 Nov 26 13:57 boinc_task_state.xml
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas      6842 Nov 26 14:09 init_data.xml
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas 906559356 Nov 26 14:15 HITS.47556161._000638.pool.root.1
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas      1059 Nov 26 14:16 memory_monitor_summary.json
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas   1516240 Nov 26 14:16 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas   2183857 Nov 26 14:16 log.47556161._000638.job.log.tgz.1
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas      8613 Nov 26 14:16 heartbeat.json
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas        95 Nov 26 14:17 pilot_heartbeat.json
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 14:17 boinc_mmap_file
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas        29 Nov 26 14:17 wrapper_checkpoint.txt
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas      4823 Nov 26 14:17 pilotlog.txt
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas   8081766 Nov 26 14:17 log.47556161._000638.job.log.1
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas       353 Nov 26 14:17 output.list
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas       620 Nov 26 14:17 runtime_log
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas  10280960 Nov 26 14:17 result.tar.gz
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas       658 Nov 26 14:17 wy6MDmAYzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmg6LKDmO3CCVm.diag
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas      9333 Nov 26 14:17 runtime_log.err
[2025-11-26 14:17:27] -rw-r--r--. 1 boincer umatlas     21235 Nov 26 14:17 stderr.txt
[2025-11-26 14:17:27] HITS file was successfully produced:
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas 906559356 Nov 26 14:15 shared/HITS.pool.root.1
[2025-11-26 14:17:27]  *** Contents of shared directory: ***
[2025-11-26 14:17:27] total 1295116
[2025-11-26 14:17:27] -rw-r--r--. 2 boincer umatlas 408743367 Nov 25 19:26 ATLAS.root_0
[2025-11-26 14:17:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:26 start_atlas.sh
[2025-11-26 14:17:27] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 19:26 input.tar.gz
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas 906559356 Nov 26 14:15 HITS.pool.root.1
[2025-11-26 14:17:27] -rw-------. 1 boincer umatlas  10280960 Nov 26 14:17 result.tar.gz
14:17:28 (989212): run_atlas exited; CPU time 253977.025699
14:17:28 (989212): called boinc_finish(0)

</stderr_txt>
]]>

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