Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:04:09 (2121972): wrapper (7.7.26015): starting
00:04:09 (2121972): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 00:04:09] Arguments: --nthreads 3
[2025-11-26 00:04:09] Threads: 3
[2025-11-26 00:04:09] Checking for CVMFS
[2025-11-26 00:04:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:10] 2.9.2.0 1308651 181 65788 153300 2 88 35421795 36864000 0 130560 0 2441688 99.999 9457 6669 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 00:04:10] CVMFS is ok
[2025-11-26 00:04:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:10] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:10] Checking for apptainer binary...
[2025-11-26 00:04:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:10] Running /usr/bin/apptainer --version
[2025-11-26 00:04:10] apptainer version 1.4.1-1.1
[2025-11-26 00:04:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:10] thA335
[2025-11-26 00:04:10] apptainer works
[2025-11-26 00:04:10] Set ATHENA_PROC_NUMBER=3
[2025-11-26 00:04:10] Set ATHENA_CORE_NUMBER=3
[2025-11-26 00:04:10] Starting ATLAS job with PandaID=6896450838
[2025-11-26 00:04:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 00:08:28]  *** The last 200 lines of the pilot log: ***
[2025-11-26 00:08:28] 2025-11-25 23:07:32,700 | INFO     | 
[2025-11-26 00:08:28] 2025-11-25 23:07:32,700 | INFO     | architecture information:
[2025-11-26 00:08:28] 2025-11-25 23:07:32,701 | INFO     | executing command: cat /etc/os-release
[2025-11-26 00:08:28] 2025-11-25 23:07:32,711 | INFO     | cat /etc/os-release:
[2025-11-26 00:08:28] NAME="CentOS Linux"
[2025-11-26 00:08:28] VERSION="7 (Core)"
[2025-11-26 00:08:28] ID="centos"
[2025-11-26 00:08:28] ID_LIKE="rhel fedora"
[2025-11-26 00:08:28] VERSION_ID="7"
[2025-11-26 00:08:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 00:08:28] ANSI_COLOR="0;31"
[2025-11-26 00:08:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 00:08:28] HOME_URL="https://www.centos.org/"
[2025-11-26 00:08:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 00:08:28] 
[2025-11-26 00:08:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 00:08:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 00:08:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 00:08:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 00:08:28] 
[2025-11-26 00:08:28] 2025-11-25 23:07:32,712 | INFO     | ***************************************
[2025-11-26 00:08:28] 2025-11-25 23:07:33,214 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 00:08:28] 2025-11-25 23:07:33,228 | INFO     | sufficient remaining disk space (826190856192 B)
[2025-11-26 00:08:28] 2025-11-25 23:07:33,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 00:08:28] 2025-11-25 23:07:33,228 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 00:08:28] 2025-11-25 23:07:33,228 | INFO     | update_server=False
[2025-11-26 00:08:28] 2025-11-25 23:07:33,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 00:08:28] 2025-11-25 23:07:33,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:08:28] 2025-11-25 23:07:33,228 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:08:28] 2025-11-25 23:07:33,228 | INFO     | aborting loop
[2025-11-26 00:08:28] 2025-11-25 23:07:34,063 | INFO     | all data control threads have been joined
[2025-11-26 00:08:28] 2025-11-25 23:07:34,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 00:08:28] 2025-11-25 23:07:34,234 | INFO     | [job] retrieve thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:34,235 | INFO     | [job] queue monitor thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:34,235 | INFO     | [job] job monitor thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:34,280 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:34,280 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:34,675 | INFO     | all payload control threads have been joined
[2025-11-26 00:08:28] 2025-11-25 23:07:34,841 | INFO     | [payload] failed_post thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:34,844 | INFO     | all job control threads have been joined
[2025-11-26 00:08:28] 2025-11-25 23:07:34,850 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 00:08:28] 2025-11-25 23:07:35,065 | INFO     | [data] control thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:35,074 | INFO     | [data] copytool_in thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:35,090 | INFO     | [payload] validate_post thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:35,509 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:35,639 | INFO     | [job] validate thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:35,681 | INFO     | [payload] control thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:35,729 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:35,849 | INFO     | [job] control thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:36,135 | INFO     | [data] copytool_out thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:07:38,857 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 00:08:28] 2025-11-25 23:08:02,782 | INFO     | PID=2125697 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 00:08:28] 2025-11-25 23:08:02,782 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 00:08:28] 2025-11-25 23:08:02,783 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 00:08:28] 2025-11-25 23:08:02,783 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 00:08:28] 2025-11-25 23:08:21,957 | INFO     | [monitor] cgroup control has ended
[2025-11-26 00:08:28] 2025-11-25 23:08:22,878 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140061015021376)>', '<ExcThread(monitor, started 140060208912128)>']
[2025-11-26 00:08:28] 2025-11-25 23:08:23,884 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 00:08:28] 2025-11-25 23:08:23,884 | INFO     | [monitor] control thread has ended
[2025-11-26 00:08:28] 2025-11-25 23:08:27,894 | INFO     | all workflow threads have been joined
[2025-11-26 00:08:28] 2025-11-25 23:08:27,894 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 00:08:28] 2025-11-25 23:08:27,895 | INFO     | traces error code: 0
[2025-11-26 00:08:28] 2025-11-25 23:08:27,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 00:08:28] 2025-11-25 23:08:27,981 [wrapper] ==== pilot stdout END ====
[2025-11-26 00:08:28] 2025-11-25 23:08:27,984 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 00:08:28] 2025-11-25 23:08:27,987 [wrapper] pilotpid: 2125697
[2025-11-26 00:08:28] 2025-11-25 23:08:27,990 [wrapper] Pilot exit status: 0
[2025-11-26 00:08:28] 2025-11-25 23:08:27,997 [wrapper] pandaids: 6896450838
[2025-11-26 00:08:28] 2025-11-25 23:08:28,015 [wrapper] cleanup supervisor_pilot 2125703 2125698
[2025-11-26 00:08:28] 2025-11-25 23:08:28,018 [wrapper] Test setup, not cleaning
[2025-11-26 00:08:28] 2025-11-25 23:08:28,021 [wrapper] apfmon messages muted
[2025-11-26 00:08:28] 2025-11-25 23:08:28,024 [wrapper] ==== wrapper stdout END ====
[2025-11-26 00:08:28] 2025-11-25 23:08:28,027 [wrapper] ==== wrapper stderr END ====
[2025-11-26 00:08:28]  *** Error codes and diagnostics ***
[2025-11-26 00:08:28]     "exeErrorCode": 65,
[2025-11-26 00:08:28]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 00:08:28]     "pilotErrorCode": 1305,
[2025-11-26 00:08:28]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 00:08:28]  *** Listing of results directory ***
[2025-11-26 00:08:28] total 402996
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc    576529 Nov 25 04:04 pilot3.tar.gz
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc      5112 Nov 25 05:02 queuedata.json
[2025-11-26 00:08:28] -rwx------ 1 boinc boinc     36292 Nov 25 05:04 runpilot2-wrapper.sh
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 00:08:28] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 00:04 run_atlas
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc       105 Nov 26 00:04 job.xml
[2025-11-26 00:08:28] -rw-r--r-- 2 boinc boinc 408476508 Nov 26 00:04 EVNT.47483658._001500.pool.root.1
[2025-11-26 00:08:28] -rw-r--r-- 2 boinc boinc    590107 Nov 26 00:04 input.tar.gz
[2025-11-26 00:08:28] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 00:08:28] drwxrwx--x 2 boinc boinc      4096 Nov 26 00:04 shared
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:04 boinc_setup_complete
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc      6196 Nov 26 00:04 init_data.xml
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc         0 Nov 26 00:04 boinc_lockfile
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc      2786 Nov 26 00:04 pandaJob.out
[2025-11-26 00:08:28] -rw------- 1 boinc boinc    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 00:08:28] -rw------- 1 boinc boinc   1516240 Nov 26 00:04 agis_ddmendpoints.agis.ALL.json
[2025-11-26 00:08:28] drwx------ 5 boinc boinc      4096 Nov 26 00:04 pilot3
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc       523 Nov 26 00:05 boinc_task_state.xml
[2025-11-26 00:08:28] -rw------- 1 boinc boinc       976 Nov 26 00:05 memory_monitor_summary.json
[2025-11-26 00:08:28] -rw------- 1 boinc boinc     55659 Nov 26 00:05 log.47556149._004864.job.log.tgz.1
[2025-11-26 00:08:28] -rw------- 1 boinc boinc        95 Nov 26 00:07 pilot_heartbeat.json
[2025-11-26 00:08:28] -rw------- 1 boinc boinc      8387 Nov 26 00:07 heartbeat.json
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc        22 Nov 26 00:07 wrapper_checkpoint.txt
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc      8192 Nov 26 00:08 boinc_mmap_file
[2025-11-26 00:08:28] -rw------- 1 boinc boinc      4752 Nov 26 00:08 pilotlog.txt
[2025-11-26 00:08:28] -rw------- 1 boinc boinc     91606 Nov 26 00:08 log.47556149._004864.job.log.1
[2025-11-26 00:08:28] -rw------- 1 boinc boinc       186 Nov 26 00:08 output.list
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc       620 Nov 26 00:08 runtime_log
[2025-11-26 00:08:28] -rw------- 1 boinc boinc    163840 Nov 26 00:08 result.tar.gz
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc      8744 Nov 26 00:08 runtime_log.err
[2025-11-26 00:08:28] -rw------- 1 boinc boinc       649 Nov 26 00:08 bE6MDmYTzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmS6LKDmfZ1DQm.diag
[2025-11-26 00:08:28] -rw-r--r-- 1 boinc boinc      9403 Nov 26 00:08 stderr.txt
[2025-11-26 00:08:28] No HITS result produced
[2025-11-26 00:08:28]  *** Contents of shared directory: ***
[2025-11-26 00:08:28] total 399664
[2025-11-26 00:08:28] -rw-r--r-- 2 boinc boinc 408476508 Nov 26 00:04 ATLAS.root_0
[2025-11-26 00:08:28] -rw-r--r-- 2 boinc boinc    590107 Nov 26 00:04 input.tar.gz
[2025-11-26 00:08:28] -rw-r--r-- 2 boinc boinc     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 00:08:28] -rw------- 1 boinc boinc    163840 Nov 26 00:08 result.tar.gz
00:08:29 (2121972): run_atlas exited; CPU time 30.996693
00:08:29 (2121972): called boinc_finish(0)

</stderr_txt>
]]>

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