Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:46:33 (2594452): wrapper (7.7.26015): starting
17:46:33 (2594452): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 17:46:33] Arguments: --nthreads 8
[2025-11-25 17:46:33] Threads: 8
[2025-11-25 17:46:33] Checking for CVMFS
[2025-11-25 17:46:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:46:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:46:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:46:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:46:35] 2.13.3.0 10978 29182 367480 153300 1 607 36582780 40960000 14314 16776704 0 66292607 99.517 88365699 39520 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 17:46:35] CVMFS is ok
[2025-11-25 17:46:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:46:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:46:35] Further information can be found at the LHC@home message board.
[2025-11-25 17:46:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:46:35] Checking for apptainer binary...
[2025-11-25 17:46:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:46:35] Running /usr/bin/apptainer --version
[2025-11-25 17:46:35] apptainer version 1.4.4-1.el9
[2025-11-25 17:46:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:46:36] c6-8-12-1.aglt2.org
[2025-11-25 17:46:36] apptainer works
[2025-11-25 17:46:36] Set ATHENA_PROC_NUMBER=8
[2025-11-25 17:46:36] Set ATHENA_CORE_NUMBER=8
[2025-11-25 17:46:36] Starting ATLAS job with PandaID=6896450832
[2025-11-25 17:46:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:53:37]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:53:37] 2025-11-27 00:52:34,729 | INFO     | monitor loop #5423: job 0:6896450832 is in state 'finished'
[2025-11-26 19:53:37] 2025-11-27 00:52:34,729 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:53:37] 2025-11-27 00:52:35,813 | INFO     | time since job start (93900s) is within the limit (172800.0s)
[2025-11-26 19:53:37] 2025-11-27 00:52:37,235 | INFO     | monitor loop #5424: job 0:6896450832 is in state 'finished'
[2025-11-26 19:53:37] 2025-11-27 00:52:37,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:53:37] 2025-11-27 00:52:37,820 | INFO     | time since job start (93902s) is within the limit (172800.0s)
[2025-11-26 19:53:37] 2025-11-27 00:52:39,742 | INFO     | monitor loop #5425: job 0:6896450832 is in state 'finished'
[2025-11-26 19:53:37] 2025-11-27 00:52:39,742 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:53:37] 2025-11-27 00:52:39,828 | INFO     | time since job start (93904s) is within the limit (172800.0s)
[2025-11-26 19:53:37] 2025-11-27 00:52:41,476 | INFO     | PID=2598551 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 19:53:37] 2025-11-27 00:52:41,476 | INFO     | .. there are 18 such processes running
[2025-11-26 19:53:37] 2025-11-27 00:52:42,245 | INFO     | monitor loop #5426: job 0:6896450832 is in state 'finished'
[2025-11-26 19:53:37] 2025-11-27 00:52:42,245 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:53:37] 2025-11-27 00:52:42,477 | INFO     | time since job start (93907s) is within the limit (172800.0s)
[2025-11-26 19:53:37] 2025-11-27 00:52:44,457 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 19:53:37] 2025-11-27 00:52:44,475 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2987.700375000001
[2025-11-26 19:53:37] 2025-11-27 00:52:44,493 | INFO     | time since job start (93909s) is within the limit (172800.0s)
[2025-11-26 19:53:37] 2025-11-27 00:52:44,515 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896450832/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:53:37] 2025-11-27 00:52:44,516 | INFO     | extracted standard info from prmon json
[2025-11-26 19:53:37] 2025-11-27 00:52:44,516 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:53:37] 2025-11-27 00:52:44,516 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:53:37] 2025-11-27 00:52:44,567 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:53:37] 2025-11-27 00:52:44,569 | INFO     | sum of square deviations: 1130306362791.145
[2025-11-26 19:53:37] 2025-11-27 00:52:44,612 | INFO     | sum of deviations: 2876397759455.258
[2025-11-26 19:53:37] 2025-11-27 00:52:44,613 | INFO     | mean x: 1764157801.179987
[2025-11-26 19:53:37] 2025-11-27 00:52:44,613 | INFO     | mean y: 2972338.670565302
[2025-11-26 19:53:37] 2025-11-27 00:52:44,613 | INFO     | intersect: -4486447267.982809
[2025-11-26 19:53:37] 2025-11-27 00:52:44,615 | INFO     | chi2: 19.743678003762867
[2025-11-26 19:53:37] 2025-11-27 00:52:44,616 | INFO     | sum of square deviations: 1119327026267.9148
[2025-11-26 19:53:37] 2025-11-27 00:52:44,653 | INFO     | sum of deviations: 3427443921508.3145
[2025-11-26 19:53:37] 2025-11-27 00:52:44,654 | INFO     | mean x: 1764157648.690352
[2025-11-26 19:53:37] 2025-11-27 00:52:44,654 | INFO     | mean y: 2979991.413298566
[2025-11-26 19:53:37] 2025-11-27 00:52:44,654 | INFO     | intersect: -5398972492.256014
[2025-11-26 19:53:37] 2025-11-27 00:52:44,655 | INFO     | chi2: 16.28908943235865
[2025-11-26 19:53:37] 2025-11-27 00:52:44,656 | INFO     | current chi2=16.28908943235865 (change=17.49718857218913 %)
[2025-11-26 19:53:37] 2025-11-27 00:52:44,656 | INFO     | right removable region: 1533
[2025-11-26 19:53:37] 2025-11-27 00:52:44,658 | INFO     | sum of square deviations: 1119324040927.918
[2025-11-26 19:53:37] 2025-11-27 00:52:44,713 | INFO     | sum of deviations: 2296285870127.8706
[2025-11-26 19:53:37] 2025-11-27 00:52:44,713 | INFO     | mean x: 1764157953.690352
[2025-11-26 19:53:37] 2025-11-27 00:52:44,713 | INFO     | mean y: 2980392.728161669
[2025-11-26 19:53:37] 2025-11-27 00:52:44,714 | INFO     | intersect: -3616177986.4437637
[2025-11-26 19:53:37] 2025-11-27 00:52:44,716 | INFO     | chi2: 16.364201325635037
[2025-11-26 19:53:37] 2025-11-27 00:52:44,716 | INFO     | current chi2=16.364201325635037 (change=17.11675341080699 %)
[2025-11-26 19:53:37] 2025-11-27 00:52:44,716 | INFO     | left removable region: 10
[2025-11-26 19:53:37] 2025-11-27 00:52:44,719 | INFO     | sum of square deviations: 1095417898694.1849
[2025-11-26 19:53:37] 2025-11-27 00:52:44,757 | INFO     | monitor loop #5427: job 0:6896450832 is in state 'finished'
[2025-11-26 19:53:37] 2025-11-27 00:52:44,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:53:37] 2025-11-27 00:52:44,761 | INFO     | sum of deviations: 2698626035793.707
[2025-11-26 19:53:37] 2025-11-27 00:52:44,761 | INFO     | mean x: 1764157923.209455
[2025-11-26 19:53:37] 2025-11-27 00:52:44,763 | INFO     | mean y: 2993552.076165463
[2025-11-26 19:53:37] 2025-11-27 00:52:44,763 | INFO     | intersect: -4343112631.235247
[2025-11-26 19:53:37] 2025-11-27 00:52:44,764 | INFO     | chi2: 11.34412773660051
[2025-11-26 19:53:37] 2025-11-27 00:52:44,765 | INFO     | current memory leak: 2.46 B/s (using 1523 data points, chi2=11.34)
[2025-11-26 19:53:37] 2025-11-27 00:52:44,767 | INFO     | could have reported an average CPU frequency of 2987 MHz (54 samples)
[2025-11-26 19:53:37] 2025-11-27 00:52:44,767 | INFO     | ..............................
[2025-11-26 19:53:37] 2025-11-27 00:52:44,768 | INFO     | . Timing measurements:
[2025-11-26 19:53:37] 2025-11-27 00:52:44,768 | INFO     | . get job = 0 s
[2025-11-26 19:53:37] 2025-11-27 00:52:44,768 | INFO     | . initial setup = 4 s
[2025-11-26 19:53:37] 2025-11-27 00:52:44,768 | INFO     | . payload setup = 8 s
[2025-11-26 19:53:37] 2025-11-27 00:52:44,768 | INFO     | . stage-in = 0 s
[2025-11-26 19:53:37] 2025-11-27 00:52:44,768 | INFO     | . payload execution = 93850 s
[2025-11-26 19:53:37] 2025-11-27 00:52:44,768 | INFO     | . stage-out = 6 s
[2025-11-26 19:53:37] 2025-11-27 00:52:44,768 | INFO     | . log creation = 1 s
[2025-11-26 19:53:37] 2025-11-27 00:52:44,768 | INFO     | ..............................
[2025-11-26 19:53:37] 2025-11-27 00:52:44,892 | INFO     | 
[2025-11-26 19:53:37] 2025-11-27 00:52:44,892 | INFO     | job summary report
[2025-11-26 19:53:37] 2025-11-27 00:52:44,892 | INFO     | --------------------------------------------------
[2025-11-26 19:53:37] 2025-11-27 00:52:44,892 | INFO     | PanDA job id: 6896450832
[2025-11-26 19:53:37] 2025-11-27 00:52:44,892 | INFO     | task id: 47556149
[2025-11-26 19:53:37] 2025-11-27 00:52:44,892 | INFO     | errors: (none)
[2025-11-26 19:53:37] 2025-11-27 00:52:44,892 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:53:37] 2025-11-27 00:52:44,892 | INFO     | pilot state: finished 
[2025-11-26 19:53:37] 2025-11-27 00:52:44,893 | INFO     | transexitcode: 0
[2025-11-26 19:53:37] 2025-11-27 00:52:44,893 | INFO     | exeerrorcode: 0
[2025-11-26 19:53:37] 2025-11-27 00:52:44,893 | INFO     | exeerrordiag: 
[2025-11-26 19:53:37] 2025-11-27 00:52:44,893 | INFO     | exitcode: 0
[2025-11-26 19:53:37] 2025-11-27 00:52:44,893 | INFO     | exitmsg: OK
[2025-11-26 19:53:37] 2025-11-27 00:52:44,893 | INFO     | cpuconsumptiontime: 247233 s
[2025-11-26 19:53:37] 2025-11-27 00:52:44,893 | INFO     | nevents: 1000
[2025-11-26 19:53:37] 2025-11-27 00:52:44,893 | INFO     | neventsw: 0
[2025-11-26 19:53:37] 2025-11-27 00:52:44,894 | INFO     | pid: 2606624
[2025-11-26 19:53:37] 2025-11-27 00:52:44,894 | INFO     | pgrp: 2606624
[2025-11-26 19:53:37] 2025-11-27 00:52:44,894 | INFO     | corecount: 8
[2025-11-26 19:53:37] 2025-11-27 00:52:44,894 | INFO     | event service: False
[2025-11-26 19:53:37] 2025-11-27 00:52:44,894 | INFO     | sizes: {0: 2284315, 9: 2284577, 11: 2284605, 93863: 2353167, 93870: 2362161, 93873: 2362217, 93891: 2362591}
[2025-11-26 19:53:37] 2025-11-27 00:52:44,894 | INFO     | --------------------------------------------------
[2025-11-26 19:53:37] 2025-11-27 00:52:44,894 | INFO     | 
[2025-11-26 19:53:37] 2025-11-27 00:52:44,894 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 19:53:37] 2025-11-27 00:52:44,920 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,921 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,921 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,921 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,921 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,921 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,921 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,921 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,921 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,922 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,922 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,922 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,922 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,922 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,922 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,922 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:53:37] 2025-11-27 00:52:44,922 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,922 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:53:37] 2025-11-27 00:52:44,923 | INFO     | job 6896450832 has completed (purged errors)
[2025-11-26 19:53:37] 2025-11-27 00:52:44,923 | INFO     | overall cleanup function is called
[2025-11-26 19:53:37] 2025-11-27 00:52:45,944 | INFO     | --- collectZombieJob: --- 10, [2606624]
[2025-11-26 19:53:37] 2025-11-27 00:52:45,944 | INFO     | zombie collector waiting for pid 2606624
[2025-11-26 19:53:37] 2025-11-27 00:52:45,944 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:53:37] 2025-11-27 00:52:45,944 | INFO     | collected zombie processes
[2025-11-26 19:53:37] 2025-11-27 00:52:45,944 | INFO     | will attempt to kill all subprocesses of pid=2606624
[2025-11-26 19:53:37] 2025-11-27 00:52:46,382 | INFO     | process IDs to be killed: [2606624] (in reverse order)
[2025-11-26 19:53:37] 2025-11-27 00:52:46,536 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:53:37] 2025-11-27 00:52:46,537 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:53:37] 2025-11-27 00:52:46,555 | INFO     | did not find any defunct processes belonging to 2606624
[2025-11-26 19:53:37] 2025-11-27 00:52:46,576 | INFO     | did not find any defunct processes belonging to 2606624
[2025-11-26 19:53:37] 2025-11-27 00:52:46,588 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:53:37] 2025-11-27 00:52:46,588 | INFO     | ready for new job
[2025-11-26 19:53:37] 2025-11-27 00:52:46,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:53:37] 2025-11-27 00:52:46,594 | INFO     | ***************************************
[2025-11-26 19:53:37] 2025-11-27 00:52:46,594 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:53:37] 2025-11-27 00:52:46,594 | INFO     | ***************************************
[2025-11-26 19:53:37] 2025-11-27 00:52:46,594 | INFO     | 
[2025-11-26 19:53:37] 2025-11-27 00:52:46,597 | INFO     | architecture information:
[2025-11-26 19:53:37] 2025-11-27 00:52:46,600 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:53:37] 2025-11-27 00:52:46,647 | INFO     | cat /etc/os-release:
[2025-11-26 19:53:37] NAME="CentOS Linux"
[2025-11-26 19:53:37] VERSION="7 (Core)"
[2025-11-26 19:53:37] ID="centos"
[2025-11-26 19:53:37] ID_LIKE="rhel fedora"
[2025-11-26 19:53:37] VERSION_ID="7"
[2025-11-26 19:53:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:53:37] ANSI_COLOR="0;31"
[2025-11-26 19:53:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:53:37] HOME_URL="https://www.centos.org/"
[2025-11-26 19:53:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:53:37] 
[2025-11-26 19:53:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:53:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:53:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:53:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:53:37] 
[2025-11-26 19:53:37] 2025-11-27 00:52:46,647 | INFO     | ***************************************
[2025-11-26 19:53:37] 2025-11-27 00:52:47,151 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 19:53:37] 2025-11-27 00:52:47,278 | INFO     | sufficient remaining disk space (51309969408 B)
[2025-11-26 19:53:37] 2025-11-27 00:52:47,278 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:53:37] 2025-11-27 00:52:47,279 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:53:37] 2025-11-27 00:52:47,279 | INFO     | update_server=False
[2025-11-26 19:53:37] 2025-11-27 00:52:47,279 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:53:37] 2025-11-27 00:52:47,279 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:53:37] 2025-11-27 00:52:47,280 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:53:37] 2025-11-27 00:52:47,805 | INFO     | all payload control threads have been joined
[2025-11-26 19:53:37] 2025-11-27 00:52:48,209 | INFO     | all job control threads have been joined
[2025-11-26 19:53:37] 2025-11-27 00:52:48,269 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:53:37] 2025-11-27 00:52:48,269 | INFO     | aborting loop
[2025-11-26 19:53:37] 2025-11-27 00:52:48,270 | INFO     | all data control threads have been joined
[2025-11-26 19:53:37] 2025-11-27 00:52:48,285 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:48,286 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:48,305 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:48,521 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:48,662 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:48,811 | INFO     | [payload] control thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:49,149 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:49,215 | INFO     | [job] control thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:49,221 | INFO     | [job] validate thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:49,264 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:49,275 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:49,276 | INFO     | [data] control thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:49,286 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:49,499 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:49,908 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:53:37] 2025-11-27 00:52:50,914 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:52:51,289 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:53:37] 2025-11-27 00:53:22,495 | INFO     | PID=2598551 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:53:37] 2025-11-27 00:53:22,496 | INFO     | .. there are 18 such processes running
[2025-11-26 19:53:37] 2025-11-27 00:53:22,504 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:53:37] 2025-11-27 00:53:22,504 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:53:37] 2025-11-27 00:53:22,504 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:53:37] 2025-11-27 00:53:28,953 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:53:37] 2025-11-27 00:53:29,358 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140640624379712)>', '<ExcThread(monitor, started 140639912064768)>']
[2025-11-26 19:53:37] 2025-11-27 00:53:29,565 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:53:37] 2025-11-27 00:53:29,565 | INFO     | [monitor] control thread has ended
[2025-11-26 19:53:37] 2025-11-27 00:53:34,384 | INFO     | all workflow threads have been joined
[2025-11-26 19:53:37] 2025-11-27 00:53:34,384 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:53:37] 2025-11-27 00:53:34,384 | INFO     | traces error code: 0
[2025-11-26 19:53:37] 2025-11-27 00:53:34,384 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:53:37] 2025-11-27 00:53:34,824 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:53:37] 2025-11-27 00:53:34,839 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:53:37] 2025-11-27 00:53:34,924 [wrapper] pilotpid: 2598551
[2025-11-26 19:53:37] 2025-11-27 00:53:34,937 [wrapper] Pilot exit status: 0
[2025-11-26 19:53:37] 2025-11-27 00:53:35,234 [wrapper] pandaids: 6896450832
[2025-11-26 19:53:37] 2025-11-27 00:53:35,912 [wrapper] cleanup supervisor_pilot 2519478 2598552
[2025-11-26 19:53:37] 2025-11-27 00:53:35,943 [wrapper] Test setup, not cleaning
[2025-11-26 19:53:37] 2025-11-27 00:53:36,018 [wrapper] apfmon messages muted
[2025-11-26 19:53:37] 2025-11-27 00:53:36,037 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:53:37] 2025-11-27 00:53:36,052 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:53:37]  *** Error codes and diagnostics ***
[2025-11-26 19:53:37]     "exeErrorCode": 0,
[2025-11-26 19:53:37]     "exeErrorDiag": "",
[2025-11-26 19:53:37]     "pilotErrorCode": 0,
[2025-11-26 19:53:37]     "pilotErrorDiag": "",
[2025-11-26 19:53:37]  *** Listing of results directory ***
[2025-11-26 19:53:37] total 1330312
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 22:04 pilot3.tar.gz
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 22:56 queuedata.json
[2025-11-26 19:53:37] -rwx------. 1 boincer umatlas     36292 Nov 24 23:01 runpilot2-wrapper.sh
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas       100 Nov 25 17:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:53:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 17:46 run_atlas
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas       105 Nov 25 17:46 job.xml
[2025-11-26 19:53:37] -rw-r--r--. 2 boincer umatlas 410191890 Nov 25 17:46 EVNT.47483658._001499.pool.root.1
[2025-11-26 19:53:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 17:46 start_atlas.sh
[2025-11-26 19:53:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 17:46 shared
[2025-11-26 19:53:37] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 17:46 input.tar.gz
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas         0 Nov 25 17:46 boinc_lockfile
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 17:46 pandaJob.out
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas        57 Nov 25 17:46 setup.sh.local
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas    991877 Nov 25 17:47 agis_schedconf.cvmfs.json
[2025-11-26 19:53:37] drwx------. 5 boincer umatlas      4096 Nov 25 17:47 pilot3
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:28 boinc_task_state.xml
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 19:46 init_data.xml
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas 919962785 Nov 26 19:51 HITS.47556149._004858.pool.root.1
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas      1058 Nov 26 19:52 memory_monitor_summary.json
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:52 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas   2501996 Nov 26 19:52 log.47556149._004858.job.log.tgz.1
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas      8619 Nov 26 19:52 heartbeat.json
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas        95 Nov 26 19:53 pilot_heartbeat.json
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas      4824 Nov 26 19:53 pilotlog.txt
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:53 boinc_mmap_file
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas        29 Nov 26 19:53 wrapper_checkpoint.txt
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas  11578244 Nov 26 19:53 log.47556149._004858.job.log.1
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas       353 Nov 26 19:53 output.list
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:53 runtime_log
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas  14100480 Nov 26 19:53 result.tar.gz
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 19:53 runtime_log.err
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas       661 Nov 26 19:53 pJSKDmaQzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmH6LKDm1OvJpm.diag
[2025-11-26 19:53:37] -rw-r--r--. 1 boincer umatlas     21589 Nov 26 19:53 stderr.txt
[2025-11-26 19:53:37] HITS file was successfully produced:
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas 919962785 Nov 26 19:51 shared/HITS.pool.root.1
[2025-11-26 19:53:37]  *** Contents of shared directory: ***
[2025-11-26 19:53:37] total 1313360
[2025-11-26 19:53:37] -rw-r--r--. 2 boincer umatlas 410191890 Nov 25 17:46 ATLAS.root_0
[2025-11-26 19:53:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 17:46 start_atlas.sh
[2025-11-26 19:53:37] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 17:46 input.tar.gz
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas 919962785 Nov 26 19:51 HITS.pool.root.1
[2025-11-26 19:53:37] -rw-------. 1 boincer umatlas  14100480 Nov 26 19:53 result.tar.gz
19:53:38 (2594452): run_atlas exited; CPU time 249355.029342
19:53:38 (2594452): called boinc_finish(0)

</stderr_txt>
]]>

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