Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:57:16 (12703): wrapper (7.7.26015): starting
17:57:16 (12703): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 17:57:16] Arguments: --nthreads 8
[2025-11-25 17:57:16] Threads: 8
[2025-11-25 17:57:16] Checking for CVMFS
[2025-11-25 17:57:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:57:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:57:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:57:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:57:17] 2.11.2.0 2830 48053 86868 153300 2 81 16629595 20275201 1 130560 0 8865018 99.727 2990691 27395 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 17:57:17] CVMFS is ok
[2025-11-25 17:57:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:57:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:57:17] Further information can be found at the LHC@home message board.
[2025-11-25 17:57:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:57:17] Checking for apptainer binary...
[2025-11-25 17:57:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:57:17] Running /usr/bin/apptainer --version
[2025-11-25 17:57:17] apptainer version 1.3.2-1.el7
[2025-11-25 17:57:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:57:18] c-204-5.aglt2.org
[2025-11-25 17:57:18] apptainer works
[2025-11-25 17:57:18] Set ATHENA_PROC_NUMBER=8
[2025-11-25 17:57:18] Set ATHENA_CORE_NUMBER=8
[2025-11-25 17:57:18] Starting ATLAS job with PandaID=6896450392
[2025-11-25 17:57:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:38:06]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:38:06] 2025-11-26 11:37:26,474 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 06:38:06] 2025-11-26 11:37:26,475 | INFO     | executing command: lscpu
[2025-11-26 06:38:06] 2025-11-26 11:37:26,495 | INFO     | time since job start (45590s) is within the limit (172800.0s)
[2025-11-26 06:38:06] 2025-11-26 11:37:26,502 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 06:38:06] 2025-11-26 11:37:28,040 | INFO     | monitor loop #3375: job 0:6896450392 is in state 'finished'
[2025-11-26 06:38:06] 2025-11-26 11:37:28,046 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:38:06] 2025-11-26 11:37:28,501 | INFO     | time since job start (45592s) is within the limit (172800.0s)
[2025-11-26 06:38:06] 2025-11-26 11:37:30,506 | INFO     | time since job start (45594s) is within the limit (172800.0s)
[2025-11-26 06:38:06] 2025-11-26 11:37:30,548 | INFO     | monitor loop #3376: job 0:6896450392 is in state 'finished'
[2025-11-26 06:38:06] 2025-11-26 11:37:30,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:38:06] 2025-11-26 11:37:32,118 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 06:38:06] 2025-11-26 11:37:32,122 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.375
[2025-11-26 06:38:06] 2025-11-26 11:37:32,124 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896450392/memory_monitor_output.txt (trf name=prmon)
[2025-11-26 06:38:06] 2025-11-26 11:37:32,137 | INFO     | extracted standard info from memory monitor json
[2025-11-26 06:38:06] 2025-11-26 11:37:32,137 | WARNING  | standard memory fields were not found in memory monitor json (or json doesn't exist yet): 'totRCHAR'
[2025-11-26 06:38:06] 2025-11-26 11:37:32,144 | INFO     | fitting pss+swap vs Time
[2025-11-26 06:38:06] 2025-11-26 11:37:32,145 | INFO     | sum of square deviations: 36480471750.20611
[2025-11-26 06:38:06] 2025-11-26 11:37:32,151 | INFO     | sum of deviations: 572383406383.9493
[2025-11-26 06:38:06] 2025-11-26 11:37:32,151 | INFO     | mean x: 1764126403.0755103
[2025-11-26 06:38:06] 2025-11-26 11:37:32,151 | INFO     | mean y: 2896254.7040816327
[2025-11-26 06:38:06] 2025-11-26 11:37:32,151 | INFO     | intersect: -27676479352.01404
[2025-11-26 06:38:06] 2025-11-26 11:37:32,152 | INFO     | chi2: 2.187656775844314
[2025-11-26 06:38:06] 2025-11-26 11:37:32,152 | INFO     | sum of square deviations: 35375091328.3506
[2025-11-26 06:38:06] 2025-11-26 11:37:32,157 | INFO     | sum of deviations: 561453510427.2161
[2025-11-26 06:38:06] 2025-11-26 11:37:32,158 | INFO     | mean x: 1764126250.5773196
[2025-11-26 06:38:06] 2025-11-26 11:37:32,158 | INFO     | mean y: 2894746.674226804
[2025-11-26 06:38:06] 2025-11-26 11:37:32,158 | INFO     | intersect: -27996322754.41655
[2025-11-26 06:38:06] 2025-11-26 11:37:32,158 | INFO     | chi2: 2.1852754893843875
[2025-11-26 06:38:06] 2025-11-26 11:37:32,159 | INFO     | current chi2=2.1852754893843875 (change=0.1088510083583651 %)
[2025-11-26 06:38:06] 2025-11-26 11:37:32,159 | INFO     | right removable region: 484
[2025-11-26 06:38:06] 2025-11-26 11:37:32,159 | INFO     | sum of square deviations: 35374978966.032906
[2025-11-26 06:38:06] 2025-11-26 11:37:32,165 | INFO     | sum of deviations: 442856222164.2414
[2025-11-26 06:38:06] 2025-11-26 11:37:32,165 | INFO     | mean x: 1764126555.5814433
[2025-11-26 06:38:06] 2025-11-26 11:37:32,165 | INFO     | mean y: 2914078.6268041236
[2025-11-26 06:38:06] 2025-11-26 11:37:32,165 | INFO     | intersect: -22082029705.356075
[2025-11-26 06:38:06] 2025-11-26 11:37:32,166 | INFO     | chi2: 0.11953264870257295
[2025-11-26 06:38:06] 2025-11-26 11:37:32,166 | INFO     | current chi2=0.11953264870257295 (change=94.53604194120258 %)
[2025-11-26 06:38:06] 2025-11-26 11:37:32,166 | INFO     | sum of square deviations: 34292103914.666668
[2025-11-26 06:38:06] 2025-11-26 11:37:32,172 | INFO     | sum of deviations: 415242618230.16675
[2025-11-26 06:38:06] 2025-11-26 11:37:32,172 | INFO     | mean x: 1764126708.0833333
[2025-11-26 06:38:06] 2025-11-26 11:37:32,172 | INFO     | mean y: 2917963.995833333
[2025-11-26 06:38:06] 2025-11-26 11:37:32,172 | INFO     | intersect: -21358868264.611217
[2025-11-26 06:38:06] 2025-11-26 11:37:32,173 | INFO     | chi2: 0.09267691796030852
[2025-11-26 06:38:06] 2025-11-26 11:37:32,173 | INFO     | current chi2=0.09267691796030852 (change=22.46727654223423 %)
[2025-11-26 06:38:06] 2025-11-26 11:37:32,173 | INFO     | left removable region: 20
[2025-11-26 06:38:06] 2025-11-26 11:37:32,174 | INFO     | sum of square deviations: 30975865018.551678
[2025-11-26 06:38:06] 2025-11-26 11:37:32,179 | INFO     | sum of deviations: 356481570525.17224
[2025-11-26 06:38:06] 2025-11-26 11:37:32,179 | INFO     | mean x: 1764126830.086207
[2025-11-26 06:38:06] 2025-11-26 11:37:32,179 | INFO     | mean y: 2923515.995689655
[2025-11-26 06:38:06] 2025-11-26 11:37:32,179 | INFO     | intersect: -20299292503.414406
[2025-11-26 06:38:06] 2025-11-26 11:37:32,180 | INFO     | chi2: 0.054866562680009924
[2025-11-26 06:38:06] 2025-11-26 11:37:32,180 | INFO     | current memory leak: 11.51 B/s (using 464 data points, chi2=0.05)
[2025-11-26 06:38:06] 2025-11-26 11:37:32,180 | INFO     | could have reported an average CPU frequency of 2164 MHz (28 samples)
[2025-11-26 06:38:06] 2025-11-26 11:37:32,181 | INFO     | ..............................
[2025-11-26 06:38:06] 2025-11-26 11:37:32,181 | INFO     | . Timing measurements:
[2025-11-26 06:38:06] 2025-11-26 11:37:32,181 | INFO     | . get job = 0 s
[2025-11-26 06:38:06] 2025-11-26 11:37:32,181 | INFO     | . initial setup = 2 s
[2025-11-26 06:38:06] 2025-11-26 11:37:32,181 | INFO     | . payload setup = 8 s
[2025-11-26 06:38:06] 2025-11-26 11:37:32,181 | INFO     | . stage-in = 0 s
[2025-11-26 06:38:06] 2025-11-26 11:37:32,181 | INFO     | . payload execution = 45496 s
[2025-11-26 06:38:06] 2025-11-26 11:37:32,182 | INFO     | . stage-out = 3 s
[2025-11-26 06:38:06] 2025-11-26 11:37:32,182 | INFO     | . log creation = 0 s
[2025-11-26 06:38:06] 2025-11-26 11:37:32,182 | INFO     | ..............................
[2025-11-26 06:38:06] 2025-11-26 11:37:32,511 | INFO     | time since job start (45596s) is within the limit (172800.0s)
[2025-11-26 06:38:06] 2025-11-26 11:37:32,765 | INFO     | 
[2025-11-26 06:38:06] 2025-11-26 11:37:32,765 | INFO     | job summary report
[2025-11-26 06:38:06] 2025-11-26 11:37:32,766 | INFO     | --------------------------------------------------
[2025-11-26 06:38:06] 2025-11-26 11:37:32,766 | INFO     | PanDA job id: 6896450392
[2025-11-26 06:38:06] 2025-11-26 11:37:32,766 | INFO     | task id: 47556149
[2025-11-26 06:38:06] 2025-11-26 11:37:32,766 | INFO     | errors: (none)
[2025-11-26 06:38:06] 2025-11-26 11:37:32,766 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:38:06] 2025-11-26 11:37:32,767 | INFO     | pilot state: finished 
[2025-11-26 06:38:06] 2025-11-26 11:37:32,767 | INFO     | transexitcode: 0
[2025-11-26 06:38:06] 2025-11-26 11:37:32,767 | INFO     | exeerrorcode: 0
[2025-11-26 06:38:06] 2025-11-26 11:37:32,767 | INFO     | exeerrordiag: 
[2025-11-26 06:38:06] 2025-11-26 11:37:32,767 | INFO     | exitcode: 0
[2025-11-26 06:38:06] 2025-11-26 11:37:32,767 | INFO     | exitmsg: OK
[2025-11-26 06:38:06] 2025-11-26 11:37:32,768 | INFO     | cpuconsumptiontime: 353428 s
[2025-11-26 06:38:06] 2025-11-26 11:37:32,768 | INFO     | nevents: 1000
[2025-11-26 06:38:06] 2025-11-26 11:37:32,768 | INFO     | neventsw: 0
[2025-11-26 06:38:06] 2025-11-26 11:37:32,768 | INFO     | pid: 22872
[2025-11-26 06:38:06] 2025-11-26 11:37:32,768 | INFO     | pgrp: 22872
[2025-11-26 06:38:06] 2025-11-26 11:37:32,768 | INFO     | corecount: 8
[2025-11-26 06:38:06] 2025-11-26 11:37:32,769 | INFO     | event service: False
[2025-11-26 06:38:06] 2025-11-26 11:37:32,769 | INFO     | sizes: {0: 2284088, 1: 2284343, 7: 2284605, 12: 2284633, 45570: 2330754, 45573: 2339748, 45574: 2339932, 45579: 2340178}
[2025-11-26 06:38:06] 2025-11-26 11:37:32,769 | INFO     | --------------------------------------------------
[2025-11-26 06:38:06] 2025-11-26 11:37:32,769 | INFO     | 
[2025-11-26 06:38:06] 2025-11-26 11:37:32,769 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 06:38:06] 2025-11-26 11:37:32,796 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,797 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,797 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,797 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,797 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,797 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,798 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,798 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,798 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,798 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,798 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,799 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,799 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,799 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,799 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,799 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,799 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,800 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:38:06] 2025-11-26 11:37:32,800 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,800 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:38:06] 2025-11-26 11:37:32,800 | INFO     | job 6896450392 has completed (purged errors)
[2025-11-26 06:38:06] 2025-11-26 11:37:32,800 | INFO     | overall cleanup function is called
[2025-11-26 06:38:06] 2025-11-26 11:37:33,814 | INFO     | --- collectZombieJob: --- 10, [22872]
[2025-11-26 06:38:06] 2025-11-26 11:37:33,815 | INFO     | zombie collector waiting for pid 22872
[2025-11-26 06:38:06] 2025-11-26 11:37:33,815 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:38:06] 2025-11-26 11:37:33,815 | INFO     | collected zombie processes
[2025-11-26 06:38:06] 2025-11-26 11:37:33,815 | INFO     | will attempt to kill all subprocesses of pid=22872
[2025-11-26 06:38:06] 2025-11-26 11:37:33,908 | INFO     | process IDs to be killed: [22872] (in reverse order)
[2025-11-26 06:38:06] 2025-11-26 11:37:33,964 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:38:06] 2025-11-26 11:37:33,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:38:06] 2025-11-26 11:37:33,969 | INFO     | did not find any defunct processes belonging to 22872
[2025-11-26 06:38:06] 2025-11-26 11:37:33,973 | INFO     | did not find any defunct processes belonging to 22872
[2025-11-26 06:38:06] 2025-11-26 11:37:33,975 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:38:06] 2025-11-26 11:37:33,975 | INFO     | ready for new job
[2025-11-26 06:38:06] 2025-11-26 11:37:33,975 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:38:06] 2025-11-26 11:37:33,979 | INFO     | ***************************************
[2025-11-26 06:38:06] 2025-11-26 11:37:33,979 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:38:06] 2025-11-26 11:37:33,979 | INFO     | ***************************************
[2025-11-26 06:38:06] 2025-11-26 11:37:33,979 | INFO     | 
[2025-11-26 06:38:06] 2025-11-26 11:37:33,980 | INFO     | architecture information:
[2025-11-26 06:38:06] 2025-11-26 11:37:33,981 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:38:06] 2025-11-26 11:37:33,998 | INFO     | cat /etc/os-release:
[2025-11-26 06:38:06] NAME="CentOS Linux"
[2025-11-26 06:38:06] VERSION="7 (Core)"
[2025-11-26 06:38:06] ID="centos"
[2025-11-26 06:38:06] ID_LIKE="rhel fedora"
[2025-11-26 06:38:06] VERSION_ID="7"
[2025-11-26 06:38:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:38:06] ANSI_COLOR="0;31"
[2025-11-26 06:38:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:38:06] HOME_URL="https://www.centos.org/"
[2025-11-26 06:38:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:38:06] 
[2025-11-26 06:38:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:38:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:38:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:38:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:38:06] 
[2025-11-26 06:38:06] 2025-11-26 11:37:33,999 | INFO     | ***************************************
[2025-11-26 06:38:06] 2025-11-26 11:37:34,502 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 06:38:06] 2025-11-26 11:37:34,522 | INFO     | sufficient remaining disk space (17459838976 B)
[2025-11-26 06:38:06] 2025-11-26 11:37:34,522 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:38:06] 2025-11-26 11:37:34,523 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:38:06] 2025-11-26 11:37:34,523 | INFO     | update_server=False
[2025-11-26 06:38:06] 2025-11-26 11:37:34,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:38:06] 2025-11-26 11:37:34,524 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:38:06] 2025-11-26 11:37:34,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:38:06] 2025-11-26 11:37:34,524 | INFO     | aborting loop
[2025-11-26 06:38:06] 2025-11-26 11:37:35,243 | INFO     | all job control threads have been joined
[2025-11-26 06:38:06] 2025-11-26 11:37:35,315 | INFO     | all payload control threads have been joined
[2025-11-26 06:38:06] 2025-11-26 11:37:35,529 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:35,530 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:35,566 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:35,597 | INFO     | all data control threads have been joined
[2025-11-26 06:38:06] 2025-11-26 11:37:35,792 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:35,803 | INFO     | [job] validate thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:36,038 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:36,249 | INFO     | [job] control thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:36,320 | INFO     | [payload] control thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:36,402 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:36,530 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:36,597 | INFO     | [data] control thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:36,675 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:36,778 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:36,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:38:06] 2025-11-26 11:37:37,008 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:37,276 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:38:06] 2025-11-26 11:37:38,281 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:40,985 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:38:06] 2025-11-26 11:37:51,183 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:38:06] 2025-11-26 11:37:52,959 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139946502956864)>', '<ExcThread(monitor, started 139945326929664)>']
[2025-11-26 06:38:06] 2025-11-26 11:37:57,960 | INFO     | all workflow threads have been joined
[2025-11-26 06:38:06] 2025-11-26 11:37:57,961 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:38:06] 2025-11-26 11:37:57,961 | INFO     | traces error code: 0
[2025-11-26 06:38:06] 2025-11-26 11:37:57,961 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:38:06] 2025-11-26 11:38:05,719 | INFO     | PID=16377 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 06:38:06] 2025-11-26 11:38:05,719 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:38:06] 2025-11-26 11:38:05,720 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:38:06] 2025-11-26 11:38:05,720 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:38:06] 2025-11-26 11:38:05,720 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:38:06] 2025-11-26 11:38:05,720 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 06:38:06] 2025-11-26 11:38:05,720 | INFO     | [monitor] control thread has ended
[2025-11-26 06:38:06] 2025-11-26 11:38:05,832 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:38:06] 2025-11-26 11:38:05,836 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:38:06] 2025-11-26 11:38:05,840 [wrapper] pilotpid: 16377
[2025-11-26 06:38:06] 2025-11-26 11:38:05,845 [wrapper] Pilot exit status: 0
[2025-11-26 06:38:06] 2025-11-26 11:38:05,862 [wrapper] pandaids: 6896450392
[2025-11-26 06:38:06] 2025-11-26 11:38:05,903 [wrapper] cleanup supervisor_pilot 25428 16378
[2025-11-26 06:38:06] 2025-11-26 11:38:05,908 [wrapper] Test setup, not cleaning
[2025-11-26 06:38:06] 2025-11-26 11:38:05,913 [wrapper] apfmon messages muted
[2025-11-26 06:38:06] 2025-11-26 11:38:05,917 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:38:06] 2025-11-26 11:38:05,922 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:38:06]  *** Error codes and diagnostics ***
[2025-11-26 06:38:06]     "exeErrorCode": 0,
[2025-11-26 06:38:06]     "exeErrorDiag": "",
[2025-11-26 06:38:06]     "pilotErrorCode": 0,
[2025-11-26 06:38:06]     "pilotErrorDiag": "",
[2025-11-26 06:38:06]  *** Listing of results directory ***
[2025-11-26 06:38:06] total 1322140
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 22:04 pilot3.tar.gz
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 22:36 queuedata.json
[2025-11-26 06:38:06] -rwx------ 1 boincer umatlas     36292 Nov 24 22:40 runpilot2-wrapper.sh
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas       100 Nov 25 17:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:38:06] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 17:57 run_atlas
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas       105 Nov 25 17:57 job.xml
[2025-11-26 06:38:06] -rw-r--r-- 2 boincer umatlas 411324147 Nov 25 17:57 EVNT.47483658._001493.pool.root.1
[2025-11-26 06:38:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 17:57 start_atlas.sh
[2025-11-26 06:38:06] drwxrwx--x 2 boincer umatlas      4096 Nov 25 17:57 shared
[2025-11-26 06:38:06] -rw-r--r-- 2 boincer umatlas    590103 Nov 25 17:57 input.tar.gz
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas         0 Nov 25 17:57 boinc_lockfile
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 17:57 pandaJob.out
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas        57 Nov 25 17:57 setup.sh.local
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas    991877 Nov 25 17:57 agis_schedconf.cvmfs.json
[2025-11-26 06:38:06] drwx------ 5 boincer umatlas      4096 Nov 25 17:57 pilot3
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas       533 Nov 26 06:27 boinc_task_state.xml
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas      5912 Nov 26 06:28 init_data.xml
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas 922091547 Nov 26 06:35 HITS.47556149._004800.pool.root.1
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas   1516240 Nov 26 06:37 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas   1980315 Nov 26 06:37 log.47556149._004800.job.log.tgz.1
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas      8405 Nov 26 06:37 heartbeat.json
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas        29 Nov 26 06:37 wrapper_checkpoint.txt
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 06:37 boinc_mmap_file
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas       815 Nov 26 06:38 pilotlog.txt
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas        95 Nov 26 06:38 pilot_heartbeat.json
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas   6289943 Nov 26 06:38 log.47556149._004800.job.log.1
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas       353 Nov 26 06:38 output.list
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas       620 Nov 26 06:38 runtime_log
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas   8294400 Nov 26 06:38 result.tar.gz
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas      9338 Nov 26 06:38 runtime_log.err
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas       667 Nov 26 06:38 IWnKDmc5yh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmM5LKDmg0vREn.diag
[2025-11-26 06:38:06] -rw-r--r-- 1 boincer umatlas     21622 Nov 26 06:38 stderr.txt
[2025-11-26 06:38:06] HITS file was successfully produced:
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas 922091547 Nov 26 06:35 shared/HITS.pool.root.1
[2025-11-26 06:38:06]  *** Contents of shared directory: ***
[2025-11-26 06:38:06] total 1310868
[2025-11-26 06:38:06] -rw-r--r-- 2 boincer umatlas 411324147 Nov 25 17:57 ATLAS.root_0
[2025-11-26 06:38:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 17:57 start_atlas.sh
[2025-11-26 06:38:06] -rw-r--r-- 2 boincer umatlas    590103 Nov 25 17:57 input.tar.gz
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas 922091547 Nov 26 06:35 HITS.pool.root.1
[2025-11-26 06:38:06] -rw------- 1 boincer umatlas   8294400 Nov 26 06:38 result.tar.gz
06:38:07 (12703): run_atlas exited; CPU time 349563.402957
06:38:07 (12703): called boinc_finish(0)

</stderr_txt>
]]>

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